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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0536000 |
| Transcript ID | LotjaGi1g1v0536000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G39620.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|O80647|PP195_ARATH Pentatricopeptide repeat-containing protein At2g39620; TrEMBL-Plants: tr|A0A0B2Q1K7|A0A0B2Q1K7_GLYSO Pentatricopeptide repeat-containing protein; Found in the gene: LotjaGi1g1v0536000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:106466973..106470173) extracted from Lotus japonicus Gifu genome v1.2.
GAAGATTTAGCCTAGTGCTTCCCAAAGGGTAAATCCAAACCAACATTGGCTAGGTAGTCTGCAACAGAATTAACCTCCGT GAAGAGCTATTTTTATTTATTAAGCTAAATTCTTATAGGAAAAAAATCTAAATCTCTAGCTTTTAAAAACAAATAATAAA ACAAAAATTTCACATTTGTGATGAAAGCAAAAACCCAGAATGAGACTGAGAAGAACCATCACAGCAAGACATCCATTTCA CATTCACAACCATAGCTTCCATCACTCTCACCATGCACAAACACAACATTGCCACCCCCACCACTACCTTCACCTTCTCC GTTCATGCAAACACTTGAACCCTCTTCTCCAAATCCATGCCAGTTTGATTGTCTCTGGCCTCCACCAGCTTCACCATTCC ATAACTGCCCAACTAATCAATTCCTACTCTTTCATCAACCAATGCACCTTAGCTCAATCAACATTCAATTCTATCACAAC CCCATCTCTGATTCTATGGAACTCTATGATCAGAGCTTATTCTAGGCTTCACCAGTTCCAGAAAGCTATGAACTTGTATC ACAGAATGTTGGAAATGGGACTTGAACCTGACAAGTATACATTTACATTTGTTTTGAAGGCTTGTACTGGTGCTTTAGAC TTCCATGAGGGTGTTTCTGTTCACCGAGATATAGCTTCCAGGGAGTTGGAATGTGATGTTTTTATTGGGACTGGCCTTGT TGACATGTACTGTAAAATGGGTCACTTGGATAGTGCAAGAAAGGTATTTGATAAAATGCCCAGGAAGGATGTTACTTCTT GGAATGTTATGATTTCAGGGTTGTCTCAGAGCTCAAATCTTTGCGAGGCACTGGAAATGGTTTGGAGCATGCAGATGGAG GGTGTGGAGCCTGATTCTGTGAGCATCTTGAACCTGGCTCCGGCTGTATCTAAGTTAGAGGATGTTGGTTCTTGCAAGTC CATTCATGGTTATGTGGTTCGAAGATGTATGTGTGGTGCGGTTTCGAACTCATTGATTGACATGTACTGTAAATGTGGTG AGCTGAATTTGGCTCGTCAGATTTTTGACAAGATGCGGGTGAAGGATGATGTCTCATGGGCGACAATGATGGCTGGATAT GTACATCATGGTTGTTTCTTTGAGGTTATTCAATTACTTGATAAAATGAAGCAGAAAAATGTTAAGATGAACAAGGTATC AATTGTAAATGCCCTGTTGGCAGTTGCAGAGATGAGAAACCTAGAGAAAGGGAAGGAAATTCATAATTATGCTTCACAAC TAGGGATGATGTCAGATATTATTGTGGCTACTCCTATTGTGAGCATGTATGTAAAATGTGGTGAATTGAAGAAAGCTAAA GAATTGTTTTTTAGTCTTGAAGGTAGAGATTTGGTTGCTTGGTCCGCATTTTTATCGGCTCTTGTCCAAGCAGGGTATCC TAGAGAAGCATTGTCTCTACTCCAAGAGATGCAGAATGAAGGTTTGAAACCAGATAAAGCGACTCTGGTGAGTCTGGTTT CCGCATGTGCAGAAATTTCAAATCCTAGATTAGGTAAGGGAATGCACTGCTATACTATGAAAGCAGATGTGGAGTCTGAT ATCTCAACAATAACAACCCTTGTCTCAATGTACACTAAATGTGAATTACCTATGTATGCTATGAAGCTATTCAACAGAAT GCACTGTAGAGATGTTGTGGCATGGAATACTTTGATAAATGGGTTCACCAAATATGGTGATCCACATCTTGCTTTGGAAA TGTTTCATAGATTACAATTAAGTGGGATTCAACCAGATAGTGGAACCATGGTGGGTTTGGTTTCAGCTTGCACCCTTTTG AATGACCTCAACCTAGGAATCTGTTATCATGGGAATATTGAAAAGAGTGGTTTTGAATCAGACATTCATGTAAAAGTTGC TCTGATAGACATGTATGCCAAATGTGGGAGCCTTTGCTCTGCCGAAAACTTGTTTCTCTTAATCAAGCAATTAAAGGATG AGGTATCTTGGAATGTGATGATTGCAGGATATATGCATAATGACCGTGCTAATGAAGCAATTTCCACCTTCAACCAGATG AAATCAGAAAATGTGAGGCCCAATTTAGTCACATTTGTGACCATCCTTCCCGCTGTATCGAATTTGTCAGTATTAAGAGA GGCGATGGCTTTTCACGCCTGCGTAATCCGAATGGGATTTCTATCTAGTACCCTTGTTGGAAACAGTCTCATAGACATGT ATGCGAAATGTGGACAACTCAGTTATTCTGAGACATGCTTTCATGAAATGGAAAACAAAGACACTGTCTCATGGAATGCA ATGCTTTCAGGTTATGCAATGCACGGCCAAGGGGACCTTGCCATCGCTCTTTTTTCGCTAATGCAAGAAACTCATGTCCA TGTTGATTCTGTTTCCTACATCAGTGTATTATCTTCCTGCAGGCACGCTGGTTTAATTCAAGAAGGAAGGAACATCTTTG CGTCCATGTGCGGAAAGCGCGATCTAGAACCCAATATGGAACACTATGCCTGCATGGTTGATCTTCTAGGCCGTGCCGGC TTATTCGATGAAGTAATGAGCTTGATTAATAAAATGCCAGAAGAACCTGATGCTAAAGTTTGGGGTGCTCTACTAGGAGC GTGTCGAATTCATTCCAATGTCAAGTTAGGGGAGGTTGCCCTCCATCACCTCCTTAAACTTGAACCAAGAAATGCAGTTC ATTATGTAGTTCTGTCAGATATTTATGCTCAGTGTGGTAGATGGATTGATGCCAGAAGAACAAGATCAAATATGAATGAC CATGGATTGAAGAAAAGTCCAGGGTATAGTTGGGTTGGAGCTCATGAACAAGGTTCATGCCTTTCTGACAAGACACAAAG CCCTGCCACTATGACCAAGGATGCATGTACCACTAAAAGCTTTCTTACAAACAGAGAGCAATAACATGGACATATAGCTG ATAAGAATTTTTTTATACTTTTTAAGCAAACTGAAGAAGTAATTATTTCTTCATAACCAAAGGGGGTGTGCAATCAAATT TTCTCCTTTCAATTAGAAATGTAAAAGAAGCATGCAAGAATCACCAAGGTGTGTATCATCATGTATACTAGAATTTAAAC AAGGTGTTATTATCTAAAACTAGACATTCATTGATTCATATAATTTAAGATTGCTTCACATAAAATGGAAATGAGTAAAG G
CDS sequence (LotjaGi1g1v0536000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGACTGAGAAGAACCATCACAGCAAGACATCCATTTCACATTCACAACCATAGCTTCCATCACTCTCACCATGCACA AACACAACATTGCCACCCCCACCACTACCTTCACCTTCTCCGTTCATGCAAACACTTGAACCCTCTTCTCCAAATCCATG CCAGTTTGATTGTCTCTGGCCTCCACCAGCTTCACCATTCCATAACTGCCCAACTAATCAATTCCTACTCTTTCATCAAC CAATGCACCTTAGCTCAATCAACATTCAATTCTATCACAACCCCATCTCTGATTCTATGGAACTCTATGATCAGAGCTTA TTCTAGGCTTCACCAGTTCCAGAAAGCTATGAACTTGTATCACAGAATGTTGGAAATGGGACTTGAACCTGACAAGTATA CATTTACATTTGTTTTGAAGGCTTGTACTGGTGCTTTAGACTTCCATGAGGGTGTTTCTGTTCACCGAGATATAGCTTCC AGGGAGTTGGAATGTGATGTTTTTATTGGGACTGGCCTTGTTGACATGTACTGTAAAATGGGTCACTTGGATAGTGCAAG AAAGGTATTTGATAAAATGCCCAGGAAGGATGTTACTTCTTGGAATGTTATGATTTCAGGGTTGTCTCAGAGCTCAAATC TTTGCGAGGCACTGGAAATGGTTTGGAGCATGCAGATGGAGGGTGTGGAGCCTGATTCTGTGAGCATCTTGAACCTGGCT CCGGCTGTATCTAAGTTAGAGGATGTTGGTTCTTGCAAGTCCATTCATGGTTATGTGGTTCGAAGATGTATGTGTGGTGC GGTTTCGAACTCATTGATTGACATGTACTGTAAATGTGGTGAGCTGAATTTGGCTCGTCAGATTTTTGACAAGATGCGGG TGAAGGATGATGTCTCATGGGCGACAATGATGGCTGGATATGTACATCATGGTTGTTTCTTTGAGGTTATTCAATTACTT GATAAAATGAAGCAGAAAAATGTTAAGATGAACAAGGTATCAATTGTAAATGCCCTGTTGGCAGTTGCAGAGATGAGAAA CCTAGAGAAAGGGAAGGAAATTCATAATTATGCTTCACAACTAGGGATGATGTCAGATATTATTGTGGCTACTCCTATTG TGAGCATGTATGTAAAATGTGGTGAATTGAAGAAAGCTAAAGAATTGTTTTTTAGTCTTGAAGGTAGAGATTTGGTTGCT TGGTCCGCATTTTTATCGGCTCTTGTCCAAGCAGGGTATCCTAGAGAAGCATTGTCTCTACTCCAAGAGATGCAGAATGA AGGTTTGAAACCAGATAAAGCGACTCTGGTGAGTCTGGTTTCCGCATGTGCAGAAATTTCAAATCCTAGATTAGGTAAGG GAATGCACTGCTATACTATGAAAGCAGATGTGGAGTCTGATATCTCAACAATAACAACCCTTGTCTCAATGTACACTAAA TGTGAATTACCTATGTATGCTATGAAGCTATTCAACAGAATGCACTGTAGAGATGTTGTGGCATGGAATACTTTGATAAA TGGGTTCACCAAATATGGTGATCCACATCTTGCTTTGGAAATGTTTCATAGATTACAATTAAGTGGGATTCAACCAGATA GTGGAACCATGGTGGGTTTGGTTTCAGCTTGCACCCTTTTGAATGACCTCAACCTAGGAATCTGTTATCATGGGAATATT GAAAAGAGTGGTTTTGAATCAGACATTCATGTAAAAGTTGCTCTGATAGACATGTATGCCAAATGTGGGAGCCTTTGCTC TGCCGAAAACTTGTTTCTCTTAATCAAGCAATTAAAGGATGAGGTATCTTGGAATGTGATGATTGCAGGATATATGCATA ATGACCGTGCTAATGAAGCAATTTCCACCTTCAACCAGATGAAATCAGAAAATGTGAGGCCCAATTTAGTCACATTTGTG ACCATCCTTCCCGCTGTATCGAATTTGTCAGTATTAAGAGAGGCGATGGCTTTTCACGCCTGCGTAATCCGAATGGGATT TCTATCTAGTACCCTTGTTGGAAACAGTCTCATAGACATGTATGCGAAATGTGGACAACTCAGTTATTCTGAGACATGCT TTCATGAAATGGAAAACAAAGACACTGTCTCATGGAATGCAATGCTTTCAGGTTATGCAATGCACGGCCAAGGGGACCTT GCCATCGCTCTTTTTTCGCTAATGCAAGAAACTCATGTCCATGTTGATTCTGTTTCCTACATCAGTGTATTATCTTCCTG CAGGCACGCTGGTTTAATTCAAGAAGGAAGGAACATCTTTGCGTCCATGTGCGGAAAGCGCGATCTAGAACCCAATATGG AACACTATGCCTGCATGGTTGATCTTCTAGGCCGTGCCGGCTTATTCGATGAAGTAATGAGCTTGATTAATAAAATGCCA GAAGAACCTGATGCTAAAGTTTGGGGTGCTCTACTAGGAGCGTGTCGAATTCATTCCAATGTCAAGTTAGGGGAGGTTGC CCTCCATCACCTCCTTAAACTTGAACCAAGAAATGCAGTTCATTATGTAGTTCTGTCAGATATTTATGCTCAGTGTGGTA GATGGATTGATGCCAGAAGAACAAGATCAAATATGAATGACCATGGATTGAAGAAAAGTCCAGGGTATAGTTGGGTTGGA GCTCATGAACAAGGTTCATGCCTTTCTGACAAGACACAAAGCCCTGCCACTATGACCAAGGATGCATGTACCACTAAAAG CTTTCTTACAAACAGAGAGCAATAA
Protein sequence (LotjaGi1g1v0536000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLRRTITARHPFHIHNHSFHHSHHAQTQHCHPHHYLHLLRSCKHLNPLLQIHASLIVSGLHQLHHSITAQLINSYSFIN QCTLAQSTFNSITTPSLILWNSMIRAYSRLHQFQKAMNLYHRMLEMGLEPDKYTFTFVLKACTGALDFHEGVSVHRDIAS RELECDVFIGTGLVDMYCKMGHLDSARKVFDKMPRKDVTSWNVMISGLSQSSNLCEALEMVWSMQMEGVEPDSVSILNLA PAVSKLEDVGSCKSIHGYVVRRCMCGAVSNSLIDMYCKCGELNLARQIFDKMRVKDDVSWATMMAGYVHHGCFFEVIQLL DKMKQKNVKMNKVSIVNALLAVAEMRNLEKGKEIHNYASQLGMMSDIIVATPIVSMYVKCGELKKAKELFFSLEGRDLVA WSAFLSALVQAGYPREALSLLQEMQNEGLKPDKATLVSLVSACAEISNPRLGKGMHCYTMKADVESDISTITTLVSMYTK CELPMYAMKLFNRMHCRDVVAWNTLINGFTKYGDPHLALEMFHRLQLSGIQPDSGTMVGLVSACTLLNDLNLGICYHGNI EKSGFESDIHVKVALIDMYAKCGSLCSAENLFLLIKQLKDEVSWNVMIAGYMHNDRANEAISTFNQMKSENVRPNLVTFV TILPAVSNLSVLREAMAFHACVIRMGFLSSTLVGNSLIDMYAKCGQLSYSETCFHEMENKDTVSWNAMLSGYAMHGQGDL AIALFSLMQETHVHVDSVSYISVLSSCRHAGLIQEGRNIFASMCGKRDLEPNMEHYACMVDLLGRAGLFDEVMSLINKMP EEPDAKVWGALLGACRIHSNVKLGEVALHHLLKLEPRNAVHYVVLSDIYAQCGRWIDARRTRSNMNDHGLKKSPGYSWVG AHEQGSCLSDKTQSPATMTKDACTTKSFLTNREQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 19 | 147 | 129 | 5.5E-14 | ||
| PANTHER | 35 | 154 | 120 | 2.1E-168 | – | |
| Pfam | 95 | 142 | 48 | 4.3E-12 | ||
| ProSiteProfiles | 96 | 130 | 35 | 12.485 | ||
| TIGRFAM | 99 | 131 | 33 | 8.2E-9 | ||
| SUPERFAMILY | 99 | 855 | 757 | 1.59E-6 | ||
| ProSiteProfiles | 131 | 165 | 35 | 6.675 | ||
| Gene3D | 148 | 267 | 120 | 3.5E-20 | ||
| PANTHER | 157 | 245 | 89 | 2.1E-168 | – | |
| Pfam | 164 | 194 | 31 | 1.9E-5 | ||
| ProSiteProfiles | 166 | 196 | 31 | 9.142 | ||
| TIGRFAM | 172 | 198 | 27 | 3.4E-4 | ||
| ProSiteProfiles | 197 | 231 | 35 | 11.016 | ||
| TIGRFAM | 200 | 233 | 34 | 0.0026 | ||
| Pfam | 200 | 229 | 30 | 0.0082 | ||
| PANTHER | 252 | 356 | 105 | 2.1E-168 | – | |
| ProSiteProfiles | 265 | 295 | 31 | 8.462 | ||
| Gene3D | 268 | 329 | 62 | 5.6E-7 | ||
| Pfam | 270 | 293 | 24 | 2.5E-5 | ||
| TIGRFAM | 270 | 295 | 26 | 1.1E-4 | ||
| ProSiteProfiles | 296 | 330 | 35 | 10.106 | ||
| Pfam | 298 | 328 | 31 | 2.1E-5 | ||
| TIGRFAM | 298 | 331 | 34 | 1.0E-5 | ||
| Gene3D | 330 | 450 | 121 | 2.5E-20 | ||
| PANTHER | 349 | 445 | 97 | 2.1E-168 | – | |
| ProSiteProfiles | 366 | 396 | 31 | 6.752 | ||
| Pfam | 374 | 396 | 23 | 0.43 | ||
| ProSiteProfiles | 397 | 431 | 35 | 12.079 | ||
| Pfam | 397 | 444 | 48 | 1.5E-8 | ||
| TIGRFAM | 399 | 432 | 34 | 4.7E-7 | ||
| ProSiteProfiles | 432 | 466 | 35 | 5.119 | ||
| PANTHER | 451 | 560 | 110 | 2.1E-168 | – | |
| Gene3D | 456 | 548 | 93 | 2.2E-18 | ||
| ProSiteProfiles | 467 | 497 | 31 | 7.147 | ||
| Pfam | 498 | 544 | 47 | 6.0E-9 | ||
| ProSiteProfiles | 498 | 532 | 35 | 12.145 | ||
| TIGRFAM | 500 | 534 | 35 | 6.0E-8 | ||
| ProSiteProfiles | 533 | 567 | 35 | 5.316 | ||
| Gene3D | 549 | 667 | 119 | 3.8E-18 | ||
| PANTHER | 559 | 659 | 101 | 2.1E-168 | – | |
| ProSiteProfiles | 568 | 598 | 31 | 5.755 | ||
| Pfam | 599 | 645 | 47 | 2.5E-12 | ||
| ProSiteProfiles | 600 | 634 | 35 | 11.926 | ||
| TIGRFAM | 602 | 635 | 34 | 2.3E-7 | ||
| ProSiteProfiles | 635 | 669 | 35 | 5.93 | ||
| PANTHER | 658 | 865 | 208 | 2.1E-168 | – | |
| ProSiteProfiles | 670 | 700 | 31 | 7.355 | ||
| Gene3D | 675 | 908 | 234 | 2.1E-37 | ||
| Pfam | 700 | 747 | 48 | 4.2E-9 | ||
| ProSiteProfiles | 701 | 735 | 35 | 10.282 | ||
| TIGRFAM | 703 | 736 | 34 | 6.6E-6 | ||
| ProSiteProfiles | 736 | 771 | 36 | 7.837 | ||
| ProSiteProfiles | 772 | 802 | 31 | 8.221 | ||
| Pfam | 776 | 801 | 26 | 0.0086 | ||
| ProSiteProfiles | 838 | 872 | 35 | 8.21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0536000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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