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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0538500 |
| Transcript ID | LotjaGi1g1v0538500.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 70 kDa heat shock protein; TAIR: AT5G02500.1 heat shock cognate protein 70-1; Swiss-Prot: sp|P22953|MD37E_ARATH Probable mediator of RNA polymerase II transcription subunit 37e; TrEMBL-Plants: tr|A0A0R0FH00|A0A0R0FH00_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0538500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:106707795..106709961) extracted from Lotus japonicus Gifu genome v1.2.
CAGATCACGATGGCCGCGAAAGGAGATGGTCCCGCTATCGGAATCGACCTCGGCACCACCTACTCCTGCGTCGGAGTATG GCAGCACGACCGTGTCGAAATCATCGCCAACGACCAGGGTAACCGTACCACCCCCTCTTACGTCGGTTTCACTGATTCCG AGCGTTTGATCGGTGATGCTGCTAAGAATCAAGTCGCCATGAACCCTGTCAACACCGTCTCCGGTAACTTCCTCATCCCT GTGTCAATTGTGCATAGGTTTCTAGCTTGTTATTTCAACTATTCATAATTTGGGGTTAGGGTTAGGGTTTCTGTTAGTTG CTGCTTTTACTAGTACTACATGATATGCTAGATTGGAACTTGCTTTGTTGTTGTGGTTATTGATTGTTTGAGGTGAGATT GCTGATTGGTGAATTGGATGTTTGATTGTAGATGCCAAGAGGTTGATTGGAAAGAGATTCTCTGACGCTTCTGTTCAGAG TGACATGAAGCTATGGCCATTCAAGGTTACTGCTGGACCTGCTGACAAGCCCATGATTGGTGTCACCTACAAGGGTGAGG AGAAGCAGTTTTCTGCTGAGGAGATCTCCTCCATGGTCCTCATTAAGATGCGTGAGATTGCCGAGGCTTATCTCGGTTCC ACCGTGAAGAATGCTGTTGTTACTGTGCCAGCTTACTTCAATGACTCCCAGCGCCAGGCTACTAAGGATGCTGGTGTCAT TGCTGGACTCAATGTCATGCGTATCATCAATGAACCCACTGCTGCTGCAATTGCTTATGGTCTTGACAAGAAGGCAACCA GTGTTGGTGAGAAGAATGTTTTGATTTTTGACCTTGGTGGTGGTACTTTTGATGTCTCTCTTCTTACTATTGAAGAGGGT ATTTTTGAGGTTAAGGCCACTGCTGGAGACACCCATCTTGGAGGTGAAGATTTTGATAATAGGATGGTGAACCATTTTGT TCAGGAGTTCAAGAGGAAGAACAAGAAGGACATTAGTGGGAACCCCAGGGCTTTGAGAAGGTTGAGAACCGCATGTGAAA GGGCTAAGAGGACTCTCTCATCCACTGCACAGACCACAATTGAAATTGACTCCTTGTATGAAGGTGTTGATTTTTACACC ACAATCACCCGTGCTAGATTTGAGGAGCTCAACATGGACCTCTTCAGGAAGTGTATGGAGCCAGTTGAGAAGTGTTTGAG GGATGCAAAGATGGACAAGAACAGTGTCCATGATGTTGTTCTTGTTGGTGGGTCTACTAGGATCCCCAAGGTGCAGTCTC TATTGCAGGATTTCTTCAACGGGAAGGAGCTTTGCAAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGAGCTGCTGTT CAGGCTGCTATCTTGAGTGGTGAGGGTAATGAGAAGGTTCAGGATCTTCTGTTGTTGGATGTTACTCCCCTTTCCCTGGG TTTGGAAACTGCCGGTGGTGTCATGACTGTTCTCATTCCAAGGAACACAACAATCCCAACCAAGAAGGAGCAAGTTTTCT CAACTTACTCGGACAACCAACCTGGTGTCTTGATCCAGGTGTACGAGGGTGAAAGAGCCAGAACCAGAGATAACAACTTG TTGGGTAAATTTGAGCTTTCCGGTATTCCTCCAGCTCCAAGGGGAGTTCCTCAGATCACTGTTTGCTTTGACATTGATGC GAACGGTATCTTGAATGTCTCTGCTGAGGACAAGACTACAGGGCAGAAGAACAAGATCACTATCACCAACGACAAGGGCA GGCTTTCAAAGGAGGAGATCGAAAAGATGGTGCAGGAGGCAGAGAAGTACAAGGCTGAGGATGAGGAACATAAGAAGAAG GTTGATGCTAAGAACGCCTTGGAAAACTATGCCTACAACATGAGGAACACTATCAAGGATGAAAAGATTGGGTCTAAGCT TTCTTCTGATGATAAGAAGAAGATTGAAGATGCAATTGACCAAGCAATCCAATGGTTGGAGAGCAATCAGCTGGCTGAGG CTGACGAGTTTGAAGACAAGATGAAGGAGCTTGAGGGCCTTTGCAACCCAATCATTGCCAAGATGTACCAGGATGGAGGT GTTCCTGACATGGCTGGTGGAATGGAAGAAGATGTGCCACCATCTGCAGCCGGTGGTGCTGGCCCTAAGATCGAAGAAGT CGATTAA
CDS sequence (LotjaGi1g1v0538500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGCGAAAGGAGATGGTCCCGCTATCGGAATCGACCTCGGCACCACCTACTCCTGCGTCGGAGTATGGCAGCACGA CCGTGTCGAAATCATCGCCAACGACCAGGGTAACCGTACCACCCCCTCTTACGTCGGTTTCACTGATTCCGAGCGTTTGA TCGGTGATGCTGCTAAGAATCAAGTCGCCATGAACCCTGTCAACACCGTCTCCGATGCCAAGAGGTTGATTGGAAAGAGA TTCTCTGACGCTTCTGTTCAGAGTGACATGAAGCTATGGCCATTCAAGGTTACTGCTGGACCTGCTGACAAGCCCATGAT TGGTGTCACCTACAAGGGTGAGGAGAAGCAGTTTTCTGCTGAGGAGATCTCCTCCATGGTCCTCATTAAGATGCGTGAGA TTGCCGAGGCTTATCTCGGTTCCACCGTGAAGAATGCTGTTGTTACTGTGCCAGCTTACTTCAATGACTCCCAGCGCCAG GCTACTAAGGATGCTGGTGTCATTGCTGGACTCAATGTCATGCGTATCATCAATGAACCCACTGCTGCTGCAATTGCTTA TGGTCTTGACAAGAAGGCAACCAGTGTTGGTGAGAAGAATGTTTTGATTTTTGACCTTGGTGGTGGTACTTTTGATGTCT CTCTTCTTACTATTGAAGAGGGTATTTTTGAGGTTAAGGCCACTGCTGGAGACACCCATCTTGGAGGTGAAGATTTTGAT AATAGGATGGTGAACCATTTTGTTCAGGAGTTCAAGAGGAAGAACAAGAAGGACATTAGTGGGAACCCCAGGGCTTTGAG AAGGTTGAGAACCGCATGTGTTGATTTTTACACCACAATCACCCGTGCTAGATTTGAGGAGCTCAACATGGACCTCTTCA GGAAGTGTATGGAGCCAGTTGAGAAGTGTTTGAGGGATGCAAAGATGGACAAGAACAGTGTCCATGATGTTGTTCTTGTT GGTGGGTCTACTAGGATCCCCAAGGTGCAGTCTCTATTGCAGGATTTCTTCAACGGGAAGGAGCTTTGCAAGAGCATCAA CCCTGATGAGGCTGTTGCTTATGGAGCTGCTGTTCAGGCTGCTATCTTGAGTGGTGAGGGTAATGAGAAGGTTCAGGATC TTCTGTTGTTGGATGTTACTCCCCTTTCCCTGGGTTTGGAAACTGCCGGTGGTGTCATGACTGTTCTCATTCCAAGGAAC ACAACAATCCCAACCAAGAAGGAGCAAGTTTTCTCAACTTACTCGGACAACCAACCTGGTGTCTTGATCCAGGTGTACGA GGGTGAAAGAGCCAGAACCAGAGATAACAACTTGTTGGGTAAATTTGAGCTTTCCGGTATTCCTCCAGCTCCAAGGGGAG TTCCTCAGATCACTGTTTGCTTTGACATTGATGCGAACGGTATCTTGAATGTCTCTGCTGAGGACAAGACTACAGGGCAG AAGAACAAGATCACTATCACCAACGACAAGGGCAGGCTTTCAAAGGAGGAGATCGAAAAGATGGTGCAGGAGGCAGAGAA GTACAAGGCTGAGGATGAGGAACATAAGAAGAAGGTTGATGCTAAGAACGCCTTGGAAAACTATGCCTACAACATGAGGA ACACTATCAAGGATGAAAAGATTGGGTCTAAGCTTTCTTCTGATGATAAGAAGAAGATTGAAGATGCAATTGACCAAGCA ATCCAATGGTTGGAGAGCAATCAGCTGGCTGAGGCTGACGAGTTTGAAGACAAGATGAAGGAGCTTGAGGGCCTTTGCAA CCCAATCATTGCCAAGATGTACCAGGATGGAGGTGTTCCTGACATGGCTGGTGGAATGGAAGAAGATGTGCCACCATCTG CAGCCGGTGGTGCTGGCCCTAAGATCGAAGAAGTCGATTAA
Protein sequence (LotjaGi1g1v0538500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAKGDGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDSERLIGDAAKNQVAMNPVNTVSDAKRLIGKR FSDASVQSDMKLWPFKVTAGPADKPMIGVTYKGEEKQFSAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQ ATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD NRMVNHFVQEFKRKNKKDISGNPRALRRLRTACVDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKNSVHDVVLV GGSTRIPKVQSLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRN TTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQ KNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKKKVDAKNALENYAYNMRNTIKDEKIGSKLSSDDKKKIEDAIDQA IQWLESNQLAEADEFEDKMKELEGLCNPIIAKMYQDGGVPDMAGGMEEDVPPSAAGGAGPKIEEVD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 273 | 270 | 0.0 | – | |
| PANTHER | 4 | 273 | 270 | 0.0 | ||
| SUPERFAMILY | 8 | 191 | 184 | 1.3E-68 | ||
| PRINTS | 8 | 21 | 14 | 8.3E-81 | – | |
| Pfam | 9 | 273 | 265 | 1.8E-128 | ||
| CDD | 9 | 364 | 356 | 0.0 | – | |
| ProSitePatterns | 12 | 19 | 8 | - | ||
| PRINTS | 36 | 48 | 13 | 8.3E-81 | – | |
| PRINTS | 58 | 66 | 9 | 8.3E-81 | – | |
| Gene3D | 72 | 122 | 51 | 1.9E-28 | – | |
| PRINTS | 146 | 166 | 21 | 8.3E-81 | – | |
| SUPERFAMILY | 198 | 365 | 168 | 4.6E-57 | ||
| Gene3D | 199 | 276 | 78 | 3.5E-25 | – | |
| ProSitePatterns | 203 | 216 | 14 | - | ||
| PANTHER | 274 | 605 | 332 | 0.0 | ||
| PANTHER | 274 | 605 | 332 | 0.0 | – | |
| Pfam | 275 | 595 | 321 | 2.1E-118 | ||
| Gene3D | 277 | 289 | 13 | 1.1E-36 | – | |
| Gene3D | 290 | 348 | 59 | 1.1E-36 | – | |
| PRINTS | 314 | 330 | 17 | 8.3E-81 | – | |
| ProSitePatterns | 317 | 331 | 15 | - | ||
| PRINTS | 346 | 366 | 21 | 8.3E-81 | – | |
| Gene3D | 349 | 361 | 13 | 1.1E-36 | – | |
| Gene3D | 364 | 492 | 129 | 1.9E-64 | ||
| SUPERFAMILY | 369 | 526 | 158 | 2.09E-65 | ||
| PRINTS | 373 | 392 | 20 | 8.3E-81 | – | |
| PRINTS | 454 | 470 | 17 | 8.3E-81 | – | |
| Gene3D | 493 | 596 | 104 | 3.9E-40 | ||
| Coils | 495 | 518 | 24 | - | – | |
| SUPERFAMILY | 520 | 601 | 82 | 3.66E-31 | ||
| Coils | 565 | 585 | 21 | - | – | |
| MobiDBLite | 600 | 626 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0538500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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