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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0545200 |
| Transcript ID | LotjaGi1g1v0545200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tubulin beta chain; TAIR: AT3G61650.1 gamma-tubulin; Swiss-Prot: sp|P38557|TBG1_ARATH Tubulin gamma-1 chain; TrEMBL-Plants: tr|G7L416|G7L416_MEDTR Tubulin gamma chain; Found in the gene: LotjaGi1g1v0545200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:107452913..107459849) extracted from Lotus japonicus Gifu genome v1.2.
ACAAAACAAAAGTATCATATTCAATATTCCTGAAGTCTTTCAACTCTAACCTCTTTGAATTGAAAAGAGGGGACTGAAAT TGAAAGAGTTGATATAATACACTCTCACTCACCCAACCCACTTTGGTTCCATTTTCATTGCACTTTCCTCTTCCTCCTCA ATCTCATCCTTCTGGTACGATTTCTATTCCCCCTTTTGCTCGATTTCCCAAACTTTCAAACTCGCTCTCGTTTTTCATCT CCCATTTTCGTGGGTTGATTCTTTACATGCTTGCTTCTTCTCCCGTTTTTCGCTTTGATTATTACGTATGCAATGATTTA TGCTTGTTTGGTAGTTTTCCGCAGAAACAAACAATGCCGAGGGAAATCATCACGCTTCAGGTTGGGCAATGTGGGAACCA GATCGGCATGGAGTTCTGGAAGCAGCTCTGCCTCGAGCATGGCATCAGTAAAGATGGCATCCTCGAAGATTTCGCCACTC AGGTCCCCTCATTCACTTTCAATCATATAGTATTTATTGGGTGTTTGATTCTGCACTGACAAGTCCTATAATCACTTCTA AGAAAAAGCTACTAAAGATAGCTTCTTCAGTTACCATGCTTCGAATTGTGTGCCACGACGAATCCAAACACTCGCAATAG CCTACTTAGGCTTGAATCTTGAACAATGCACAGGCTCGCCTACCACGGGCTGATCTTCAACTTTTTTTATTAGAAATATT GGGGGTGGCAAGAATTGAAATCTATACCACTTGGTCATAGAGGCTCTGATACCATGTCACGAACCAATTATCCCAAAAGA TTAAGTTGTTTGGTAAAGGAAACATGAATTATTATATTTCTAACAGTTTTAATTCTAGACTCACCTTTTCTTGTTATCTA GATTCTGGCTTCTTTTTTTCTTTCAAAATTTTGAGATTCTTAGTTTAGTATCCTGAATTTAGTTTTTTAGTTGATCCTTG TACCTTTTAAGAATGATAGTACTTAAACTCTCATTCACTTGCTTCTTGGCAAACCACCCTAGGCCCTGATGCAATTGTAT GAATAATATAACTTAAACACACATGTCATGTATCCTTCCCTAGGGTTATTTGAAAATTGGTAAAATTGTCAGCTTTGATT TGAGTTCTTGAAAACGAAGTTCCCGCCCAGCAGCATCATATGCTGTTGTCCAGCTTCCATAGTTATCTTAATTTCATTTG ATTGTGTACTTTGATGAGTGAACGGTGAATGATTAGAAGCAATAAGTATCCATCTTTTTCCAACTTGTGATTAGTCAAGA TTGGTTTTGTGTTAATATTTACTAATATTGGTCAAATTGCTGCAGGGAGGTGATCGGAAAGATGTGTTCTTCTATCAAGC TGATGATCAGCATTATATACCGCGGGCTCTTTTGATTGACTTGGAGCCAAGAGTAATTAATGGGATTCAAAATAGCGACT ACCGAAACCTCTACAATCATGAGAACGTCTTTGTCTCAGATCATGGTGGTGGTGCAGGAAACAATTGGGCCAGCGGATAC CATCAGGTTTGTCACTAGAGCATTTTGTAACTGTGATTTGTATATTGATGGGTCAATGACTCATGGTTATAGAAGGAGAA GAAAGAAGCAAAAACATGGACCTAACAGTAGAATTTATGATAGGAAAGATATAGTGCAGGAGATGAGTGGGAGGGGTTAT TAAAGAGCTAGGGTATTAGAGCGAATAGTAGTTAGCCTAGCTAAGTTGATCATTTAGAATGTTGCTGATGCTCCATTTAT ATGGTATTTGTACATCCACAAAGATAAAGTTTAATATCGCGTGCATGTGTGTCATGATGATTGTGAGTTGATGCAGCAGT CAATGTTGGCAACTTACAGCATGAGACTTATGATGGTTTTTTTTCTTCTCTTTTTTGTGCTTATGGTTTTCCAGCAATGT TGGAATGTGTTGTAAATCTCGAAGAGTGGTGCGCAGCGGCTGACCACAAAATGCTATTGCGGTATAGTATAGCGCATAGC GGGATGACCGTGATGCTGAATTGTTTGTATAGTTTATACAACTATATACATATACATGATAAAAAAAACTCAAAATTCAT GGCACTCATAATTAAAATTAAACAGTCGTAGGTTTCTTTAACAAAACATACTAGAACCAACAAAAGTCATGGTAACCATG AGGTTTAAGTCTCTATTTCCTAAACTACACTGCCTACAAATCATCAAAGTTCTATATCAATTCCTCTTCCCCCGTCAAAC TAGACTATTCAGTATGCTTTCAAAGCAAAAACCCTGAAATACCTTCCCAAAATGCCCTAACTTGATGTCAATCAATGTCT CTGGTATTTGATGGAGCACTAACTGGCTCTAGATAATTGTTCCTAAATCTTGTTTCACATGAAATCACGTAAAGTCATTG GGAAAATATTTCTACATGCATAGTATTTATTCATTTTATAGAACTATGGATGCCTTAGATGGTCTGACTGCATATTATCA ACCTTCTAGTATTCAAGTAGTTATGTAACAAACTGGATTTCTGCTTTTCAAAAGGCTTCAGAAATGATAATCCTGATAAG TCTCTCCGTAGGAATCATAATCAGTTTTTTTATAAAATGTAAGCAAAGATATTGATGGTTAATGTCCTATATACTCCTAT AGGTGGTGACTTATATTATTAGAATGTGAACCAATTGTTTTACTAATGTGGTTGCTAATATCTGATCAGGGAAAACTTGT TGAAGAAGACATAATGGATATGATTGACAGAGAAGCAGATGGCAGTGACAGTCTTGAGGGTTTTGTTCTTTGTCATTCAA TTGCTGGTGGAACAGGCTCAGGTTTCTATTTTATCTTGTCTTTGCCTTAAAAAAATCATCCTATAAGTTTCTTCATTTTC CCTTTCTTATGGAACATTTGTTTAGTTGTTGTATCAGAAGAAGCAAACATTGCTGAAATAGTTGATTAAATTTGCACCTG ATGTATAGTACTACATGATAAAATGAATGAGGGGGATGTGTGGAGAATAGGCCGTCTTTTGGGATGTTTGGGAATGGCTG TTGTCTCTGGGCAGAGAAGTATCTTATCTGATATCCATTTTCCTTCTATTATAGTATTTTTGTTTCTACAAATTAGCTGT AATCAGAGCTGTTTCTTCTTAGTTTCTTAATTCAGTCTAAATATCAGATTCCTATTTAGCCTCTAAAGTTTGAACTTGCT ATATACAAGATGAAAGACCTTAGAGATTGCTCAAATATTTCCACAATTCGACCTGTATAATATTAGGAAAATGGTTGGTG GTACGGATGGTAGGCACGTGAAAGTAAACGAATTGTTATCATTGGTCAGATATCTCCTTATGTTGTGGCATTCCACCATG GTTTCTGCCGATAACCAATTTTAATTGCTGCAATTCTAAATTCTTGTGTTCCTCTCTTGATTTCCTTCGTAACAACTAGC ACTGCTCATAATATTATTAGCCTATTAGGGTGAGTTGGGATAACCAGTGTAGTTAAGTGCTTATGTAAATAAGCATGTAT TCATGAGCTTATTTGAAAAACTTATTAAAATGGGCTCAAAAGAATTTATCTGTATTGTAAGTGCTTATAACCTAATGAGA GGCTTATCAAAATAAGCTCAAAAGAGCTTATAGGAAGGTTCATTAGCAATTTTCATAAACTTAAATACCTGTTTAATTGT TTTCACAATAAGATAAACTCATAAGCTCTTCCAAACACACTCTTATTATTTAAATTTTCACTTATTTATGAAGCGCTTTT CCTTACTCTATGCAGGTATGGGCTCATACTTGTTGGAGGCACTGAATGACCGCTACAGCAAAAAACTAGTTCAGACCTAC AGTGTGTTTCCTAATCAAATGGAGACAAGTGATGTGGTGGTCCAACCTTACAATTCACTTTTGACACTCAAGCGACTGAC CCTTAATGCAGATTGTGTTGTAGTTCTTGACAATACTGCACTAAATAGAATTGCTGTGGAACGACTTCATTTATCAAATC CAACCTTTGCTCAAACAAATTCTTTAGTTTCTACTGTGATGTCTGCCAGCACAACCACTCTTCGTTATCCGGGCTACATG AACAATGACCTGGTTGGTCTTCTTGCTTCTTTGATCCCAACACCAAGATGCCATTTTCTGATGACAGGATATACGCCTTT GACAGTGGAACGTCAGGTGAGATTCCTGTGTCAGTTTTTTCTCAAAAAAGTTATATTTGGAACATCAAAAAAGTTTTGCT TAAATTTGTGTCACGTGAAGATTCATGTTAAATTATTGAACTGGAAGGGATATATGATATGAAGAAACTATTAATTAATC CCCCTTTCCCCCAACACACCATGTTACAGTTCTTCCATAATCTGATTGGGATATGTATTATGCATATGTTTGGGCAAAAA TGTGTGTTTTCCTATTAAACTTAGGGAAACATAAAAATCTGATGATATTTCCTTGCAGGCTAATGTAATTCGTAAGACCA CTGTACTTGATGTTATGAGAAGACTTCTGCAGGTATGCTTACTGCTTAAACAGTTGAACTTCAAATTGATTGGTTATGTG CTCTACTGATTAAATTTTAATATTTTCTGGCAGGCAAAAAATATTATGGTTTCATCTTATGCACGGACGAAAGATGCTAG CCAAGCAAAATATATATCAATTCTGAATATCATCCAAGGAGAGGTTGATCCAACTCAGGTAATGACAATAGTTACGACGT ATTAATGACAGTTCTGAATTTTTCTGTTTATATAATTTTTTCATTTTTATAAGCTGCTTTCTTAATAACTAGTTCTATAT GAGCGTTAGCGTGAAAATAATTTGTTTATAATTATATAATTTTTGTCAAAAACCTTGACAAATAAAAAACATGTTCTTAG GAAAGGAGACCTTAAAAATATACTATCCATCTGATGTCGGGGGAACTTTTCTAGTTTTACACTGATATTTGTTTTTTAAG AAGTTCCAATCAAGTTGCTGCTTGCTCAGATTGACCTGTGATAGTTATGTATCACGTTTGTACGTTGTATGTAAAATTGT AAATATTTTTAGTTTTTTACAGTGCTATACTTTATCATGATTTTGATTGTCTGTGGATTTAGGTGCATGAAAGTTTGCAG AGGATACGTGAAAGGAAGCTAGTTAACTTTATTGAGTGGGGTCCTGCAAGTATTCAGGTCTGTGGCAAAGCAATTTAAAC TTATTGCAGTGTATTTAGTTTACGACATACTCTAATTTTTCTTCTCTCTGGCACTTCTGGTAGGTTGCTCTATCCAGAAA GTCACCATATGTTCAAACTGCACACAGGGTACAACTCTATATTCTTTTTGTTTGTCTTTATTTTTATGCTTGTCATGCTT TTCTGCTCAGTGTGTTTGGAGATAGATCAACACATTGTTTAAAAATGATTGTGGTTCTGAGGTTGTGATAACCTATGTGT TCTGCATTTGTTAGGTTAGTGGCCTTATGCTGGCTAGCCATACTAGCATTCGTCACCTTTTCAGTAAATGTTTGAGCCAG TATGATAAGTTGAGAAAGAAACAAGCCTTTTTAGACAACTACCGGAAGTTCCCAATGTTTGCCGTAAGTTAAATACTTCT CTGGGCTGTAGCATCTTCATGTAGTACCTAGAAACTTGTCGTTTCATCTGATGATATCAATTACAAATGGACAGGATAAT GACCTTTCAGAATTTGATGAATCAAGGGACATAATTGAGAGTTTGGTGGATGAATATAAGGCCTGTGAGTCTCCAGATTA TATCAAATGGGGAATGGAGGTAGATGCTCTACAACCACACTAGTCACTTCCCATTTTAAGTTCATCTTGCATAACTGCTA CTTTATTTTTCCTTTTATAGGATCCTAACAATATGCTATCTGGAGAAGGCAATGTTACAGGATCACTGGATCCTAAATTA GTAGTTTGAAGAAACCAAGTAAGCTATTGTCAAGCCATAATCTAGGTTGTGTTTTTAGATTTGATTCTACTTTCTTCCTC TAGTGAGATAAAGAAAATATTAAGTTTTAGTTTTGTATGCTCGGTCTCCTTTCCACCTTTTATTTCTCTTACTAGTGTAG GCTCTGCAATAAGTATATTTATAATAAATATTAGGTTTTTAGTGTTGCGTATATTTTGAGTTTAAATTTGGATATATGAT CCAATGCCCTTGTAAAACTCTTTACACTATCAGGAGCAACAAAGTGTCTCATCATTATAATAACAGTTTTTAAACTTTTC ACAATTTCTTGAGTAGGTAGAACCACATTGGCTCAGTGATGTTGTAGACTTTCACACTGTTGGTGAATCGGAATGTAGTA TTAAGTTTTAGTTCCAGATTCTTCTAGCTAAAATCAACTGTATGTCTTTTGAATACTTGACAGGAAGGTGACATGTATGC TGGTACTACAAGGGAGCGAAACGGAATGATTTTCTGTAAGATCAGCAAGCTTCTAATGAAAGCATTTTCAACTTTTCTGG GGTATTCAAGGGTTTGCGTGTGACGCTTTTGGTTTGTGTGCGCGTTTGATTTCCGTTGAACTCAATATGGATCCACGTGA AAGTCATTGTGTCAATATCTTGCTTCTTCGATCCACGTTAAACTCAACGTGGCAAATTCTAGCTTCTCTGCTAGATCCAC GTTAAAGTCAATGTGTCATTATTCTGCTTCTCCGATCCACATTAAGCTCAACGTGACAAATTCTAGCTTCTCTGTTAGTG TTTTGAGATAAGTGAAATCACGTTTGTGTTGGTTCTTATGCCAAAACAAACATGTACGCCCCGACAAAGGGAATGTATAT GGTTTGGTTGGTCGGTCATTGGCTTGTATAGAATTAGGGAATCTAGTCTTTATTATCTTTGTTACTTTGTTGCTTATTAG GGAATTAAGTGTTTATTATGGTAAAGTGATTATATTTAGTATTTACTCTCAATTGTA
CDS sequence (LotjaGi1g1v0545200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGAGGGAAATCATCACGCTTCAGGTTGGGCAATGTGGGAACCAGATCGGCATGGAGTTCTGGAAGCAGCTCTGCCT CGAGCATGGCATCAGTAAAGATGGCATCCTCGAAGATTTCGCCACTCAGGGAGGTGATCGGAAAGATGTGTTCTTCTATC AAGCTGATGATCAGCATTATATACCGCGGGCTCTTTTGATTGACTTGGAGCCAAGAGTAATTAATGGGATTCAAAATAGC GACTACCGAAACCTCTACAATCATGAGAACGTCTTTGTCTCAGATCATGGTGGTGGTGCAGGAAACAATTGGGCCAGCGG ATACCATCAGGGAAAACTTGTTGAAGAAGACATAATGGATATGATTGACAGAGAAGCAGATGGCAGTGACAGTCTTGAGG GTTTTGTTCTTTGTCATTCAATTGCTGGTGGAACAGGCTCAGGTATGGGCTCATACTTGTTGGAGGCACTGAATGACCGC TACAGCAAAAAACTAGTTCAGACCTACAGTGTGTTTCCTAATCAAATGGAGACAAGTGATGTGGTGGTCCAACCTTACAA TTCACTTTTGACACTCAAGCGACTGACCCTTAATGCAGATTGTGTTGTAGTTCTTGACAATACTGCACTAAATAGAATTG CTGTGGAACGACTTCATTTATCAAATCCAACCTTTGCTCAAACAAATTCTTTAGTTTCTACTGTGATGTCTGCCAGCACA ACCACTCTTCGTTATCCGGGCTACATGAACAATGACCTGGTTGGTCTTCTTGCTTCTTTGATCCCAACACCAAGATGCCA TTTTCTGATGACAGGATATACGCCTTTGACAGTGGAACGTCAGGCTAATGTAATTCGTAAGACCACTGTACTTGATGTTA TGAGAAGACTTCTGCAGGCAAAAAATATTATGGTTTCATCTTATGCACGGACGAAAGATGCTAGCCAAGCAAAATATATA TCAATTCTGAATATCATCCAAGGAGAGGTTGATCCAACTCAGGTGCATGAAAGTTTGCAGAGGATACGTGAAAGGAAGCT AGTTAACTTTATTGAGTGGGGTCCTGCAAGTATTCAGGTTGCTCTATCCAGAAAGTCACCATATGTTCAAACTGCACACA GGGTTAGTGGCCTTATGCTGGCTAGCCATACTAGCATTCGTCACCTTTTCAGTAAATGTTTGAGCCAGTATGATAAGTTG AGAAAGAAACAAGCCTTTTTAGACAACTACCGGAAGTTCCCAATGTTTGCCGATAATGACCTTTCAGAATTTGATGAATC AAGGGACATAATTGAGAGTTTGGTGGATGAATATAAGGCCTGTGAGTCTCCAGATTATATCAAATGGGGAATGGAGGATC CTAACAATATGCTATCTGGAGAAGGCAATGTTACAGGATCACTGGATCCTAAATTAGTAGTTTGA
Protein sequence (LotjaGi1g1v0545200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNS DYRNLYNHENVFVSDHGGGAGNNWASGYHQGKLVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDR YSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSAST TTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQAKNIMVSSYARTKDASQAKYI SILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYDKL RKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYKACESPDYIKWGMEDPNNMLSGEGNVTGSLDPKLVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 447 | 447 | 1.5E-250 | – | |
| PANTHER | 1 | 447 | 447 | 1.5E-250 | ||
| Gene3D | 1 | 269 | 269 | 3.1E-105 | ||
| SUPERFAMILY | 2 | 246 | 245 | 4.84E-85 | ||
| CDD | 3 | 438 | 436 | 0.0 | ||
| Pfam | 4 | 214 | 211 | 1.1E-70 | ||
| PRINTS | 11 | 31 | 21 | 2.9E-62 | ||
| PRINTS | 31 | 51 | 21 | 5.0E-86 | ||
| SMART | 48 | 247 | 200 | 2.3E-58 | ||
| PRINTS | 52 | 71 | 20 | 2.9E-62 | ||
| PRINTS | 96 | 107 | 12 | 2.9E-62 | ||
| PRINTS | 108 | 132 | 25 | 2.9E-62 | ||
| PRINTS | 116 | 131 | 16 | 5.0E-86 | ||
| PRINTS | 134 | 152 | 19 | 2.9E-62 | ||
| ProSitePatterns | 142 | 148 | 7 | - | ||
| PRINTS | 153 | 174 | 22 | 2.9E-62 | ||
| PRINTS | 179 | 192 | 14 | 2.9E-62 | ||
| PRINTS | 193 | 206 | 14 | 5.0E-86 | ||
| PRINTS | 193 | 213 | 21 | 2.9E-62 | ||
| SUPERFAMILY | 247 | 446 | 200 | 9.16E-62 | ||
| SMART | 249 | 395 | 147 | 4.4E-27 | ||
| PRINTS | 251 | 262 | 12 | 5.0E-86 | ||
| Pfam | 264 | 393 | 130 | 2.9E-45 | ||
| Gene3D | 270 | 383 | 114 | 1.6E-48 | ||
| PRINTS | 286 | 301 | 16 | 5.0E-86 | ||
| PRINTS | 341 | 364 | 24 | 5.0E-86 | ||
| PRINTS | 366 | 386 | 21 | 5.0E-86 | ||
| PRINTS | 382 | 410 | 29 | 2.9E-62 | ||
| Gene3D | 384 | 445 | 62 | 1.3E-24 | ||
| PRINTS | 423 | 446 | 24 | 5.0E-86 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Gamma-tubulin complex | A multiprotein complex composed of gamma-tubulin and other non-tubulin proteins. Gamma-tubulin complexes are localized to microtubule organizing centers, and play an important role in the nucleation of microtubules. The number and complexity of non-tubulin proteins associated with these complexes varies between species. | ||
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Cellular component | Microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. | ||
| Biological process | Microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. | ||
| Biological process | Microtubule nucleation | The process in which tubulin alpha-beta heterodimers begin aggregation to form an oligomeric tubulin structure (a microtubule seed). Microtubule nucleation is the initiating step in the formation of a microtubule in the absence of any existing microtubules ('de novo' microtubule formation). | ||
| Biological process | Cytoplasmic microtubule organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in the cytoplasm of a cell. |
Expression pattern of LotjaGi1g1v0545200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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