Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0559100 |
| Transcript ID | LotjaGi1g1v0559100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-galactosidase; TAIR: AT2G16730.1 glycosyl hydrolase family 35 protein; Swiss-Prot: sp|Q9SCU9|BGA13_ARATH Beta-galactosidase 13; TrEMBL-Plants: tr|G7J8I0|G7J8I0_MEDTR Beta-galactosidase; Found in the gene: LotjaGi1g1v0559100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109142838..109147384) extracted from Lotus japonicus Gifu genome v1.2.
CGGAACTAGCTTCGGGACACATCCTCCATCTAGAGAAGGAGTGTGTCCCTGTTCAGGCTCATTTCAACCTTGTCAACCTT CCTCTCACTTGGAACCCACCAACGGGTTCCTATCAGGCCAAACAAACATGACGATGACGACTCGCAAAACCAACATCCTC TTTATCACCCTCCTTGTTACCATCATAATTGCATCTTCCATTTATCCTGCTTCTGCTCATGGCAAGAAGAAGAGGCTTGC TCATAATCGCATTAAGAACTTTCAAAATGTCACTTATGATGGCAAGTCTCTCTTCGTCAATGGAAGACGTGAGCTCCTCT TCTCTGGTTCCGTCCATTACACAAGAAGCACCCCAGATGTATGTAAAAAGATCCATCATTTCTTTATCATCCATCATTAC AAGAAAGTACTCAATTAATTAATGGCATATCATACATGTTGTGTTGTTTGTTACGTGCAGATGTGGCCAGTGATTCTTGA TAGAGCCAGACACGGAGGCCTGAATGTCATTCAAACTTACGTGTTTTGGAATGCTCATGAGCCTGAGCAAGGCAAGTTCA ACTTCGAGGGAAACTATGATCTTGTGAAGTTCATCAGGCTTGTTCAAGAGAAAGGAATGTATGTAACCCTCAGGGTTGGA CCTTTCATCCAAGCAGAATGGAATCACGGGTATGACAAGGATTTATAAATTTCTAGCAAACATATCTCAATCCAAACACT CTACATATATTTTTCTTGTTTATACAATCTTTTAAGTAACATTATCCTTCATTCTCAGAGGACTTCCATATTGGTTAAGA GAGGTTCCAGACATCATATTCCGCTCTGACAATGAACCTTATAAGGTAATTAACCAACTCTCCATATTATAATTTGCTGC AAGATTTTAATTTTAGGAGATTAATTTTTAATATGTGATATAAGAAGACTAATAAATTGTCATTTCTATTCTAAAGCAAC ACATGCAAGCATTTGTGACAAAGATTGTGCAAATGATGAAAGATGAGAAGCTCTTTGCTCCCCAAGGAGGCCCCATCATC TTGGCACAGATTGAGAACGAGTACAACCATATCCAACTTGCTTATGAAGAGAAGGGAGACAACTATGTCCAGTGGGCTGC AAATATGGCAGTAAAACTGTATGATGGAGTTCCATGGATCATGTGCAAGCAAAAGGATGCCCCTGATCCAGTTGTAAGTT TTAGGCATAACCTTTCAAATGACACATTTTATTTGAAGGTACCTTTTGTTGTGTTGTGTTATATATAGCTTGACTCTGGA TGCTTGGTTTGGTAGATCAATGCATGCAATGGAAGACACTGTGGTGATACATTCTCAGGCCCAAACAAACCATACAAGCC TACCCTATGGACTGAGAACTGGACTGCTCAGTAAGTATACTTACTTTAGCATTCCTTAATGCCTAAAACTCGGTGAAAAG TTAATTATTTGGGTCCTAGCTAGATCAGAACAAACAAATCTAATGCATATATTTGTTGGTAATATTTGAAATTACAGGTA CAGAGTATTTGGAGATCCAGTTTCCATTAGATCTGCAGAAGATATTGCTTTCTCAATTGCTCGCTTTTTCTCTAAGAATG GAAATTTAGTCAACTATTACATGGTATTGTCCTTATCATTCAAATTTATAAATAATGTAGCTGGTGGTTGCAGTTGTTTA ACTTTATCTAACTCATTGTGATACTATTGTAGTACCATGGTGGAACAAATTTTGGAAGAACAAGCTCAGCCTTCACAACA ACCCGTTATTACGATGAGGCACCTCTTGATGAGTATGGTCTGGAAAAAGAACCAAAATGGAGTCACTTGAGGGACGCTCA CAAGGCATTGCTCTTGTGTAGGAGGGCTATACTAGGTGGTAAACCCAGTGTCACAAAGCTCAACCATTTTCATGAGGTAA GCATCTGACAACGAATCAAGTGTGGATAAATTTATTTACTTAGAATCAAGTATGGAGCTCAGAAGTTACATAATTAGTCT ATTTATATAATTGATTTTAACTTTAGAACCAACTATAGAACAATTTTCAAAGATGCTACAATATTATTTACAACTTACAA GGACATTAGATTGCCTGTAAAAAAAAAACAAGGACATTAGATTAAACTATGCTGCTATTTTTATCTACTGTGCAGATTAG AATGTTTAAGAAGCCCGGAACTAAAATTTGTGCCGCTTTCATCACTAACAACCACACCAATGAGGCAGCTACCATTAATT TCAGAGGAAGGAACTACTTTTTGCCAGCACATTCCATCAGTGTCCTTCCCGATTGCAAGACTGTAGTCTACAACACTCAA AGCGTAATTTGTTAATCCCTTATATTCCAATCAACTACCAGAAAATTCACCTTATAGGGTTAATCCTTACTCCTTATAGT TATCTACCTCACATTGCCTCTAAATTGTTTTTTTCTTCAATAAAAAATAGATTGTTTCACAACACAATGCAAGGAAATAT GTGAGGTCAGCTGTTGCGAACAATCACAAGTGGGAGGTGTTTTATGAGGCTATTCCATCATCCAAGAAATTGCAAACAAA TGAAAAAACTCCTGCAGAGCTTTATAAGTTGCTTAAAGACACCACAGATTATGCATGGTACACCACCAGGTGTGTATACC TTATGGCAATTTGTGAGAAAAAGAGCATTCAGTTATTTTTATTTTCTTTGTTTTCTCATGTATCTTATACAATATTTACT GCAGCTTCGTGTTGAAGAAAGGAGACTTGCCAAAGAGGGGTGGGGCAACCCCAATTCTTCGTATTATGAGTCTCGGACAT TCACTCCTTGCATTTGTAAATGGAAAATACGTTGGTAAGAACAAAATTTTCAATAATATTTCATTAGCCTTGTATGATTA GTGAAAAGCAAGGAAGGTATTAACTTTATTGTAATTCTCTTCATTATTGGAAGGAACTGCTCATGGTACCCACGAAGAGA AATCCTTTGAATTCGAGAAAGCTGTAAACTTTAAGGTTGGAACCAACCATATATCCATCTTGGCTAGCACAGTTGGACTA CCGGTAAGAGGGACAATCTTCTTCTTCCAAGTTTGAAGAGCCTCAAGTTTTAATGGGGATAATAACATTTTGTAATCCCT TTATACGTTAAATATACAGGACAGTGGAGCCTACATGGAACACAGGTACGCAGGACCCAAGTCCATCAACATCCTTGGCC TCAGACGTGGAGAGCTTGATCTCACTCACAATGGTTGGGCTAACCGGGTAAACATCTGTCAACAAGACCTGCTTTGGATA AGAAACATGAAAGATGGCACGATAATGACTAACATGATTGAACTTATGCCTTTTTTAATTTGTAGGTTGGTCTCAAGGGT GAGGCCAATGGCATTTTCACTGAGGAGGGATCACAAAAGGTTAAATGGAGTCCACTTGCAGGACCTGGAAGGGCAATCTC CTGGTACAAGGTAAGAAATACTACCTATAAACCAAACCAGTTGACAAATATTGGAAACTTAAGAACTTCCAAGTTGTTTC CTTTTTCTTTTGTATGTTCTGAATTCAATTTTTCACAGACAAGATTTACCACCCCAGAGGGAAGAGGTCCGGTTGCCATC CGTATGACTGGTATGGGGAAGGGAATGATTTGGGTGAATGGTCGTAGCATTGGTCGACACTGGGTCAGCTTCCTCTCTCC TCTTGGACTACCTACCCAGGCAGAGTAAGCCAATCACTCACTCACTATGATTGTTGGCCTTGAAATCCAAGTTATTAATC TTTGTTTGTACCAGGTACCATATCCCAAGAGCTTACCTCAACCCAAAAGACAACTTGCTTGTTATATTGGAGGAGGACCA AGGAACTCCAGAGAAGATTGAGATCATGAATGTTAATAGAGATACAGTGTGCAGTATCATTGAGGAGAGCGATCCCCCCA ATGTCAATTCATGGGTGTCTTCCCATGGACAGTTCCGTCCCAGAGTGAGCAATGTTGCAACACAAGCTTCCCTCAGCTGT GGAAGTGGCAAGAAGATTGTGGCGGTGGAGTTTGCAAGCTTTGGTAACCCTTCAGGTTCATGCGGAAAGTTGGTTTTGGG CGACTGTAATGCAGCTGCTACACAGCAGATTGTTGAGCAGCAATGCTTGGGAAAAGGATCTTGCAATGTCGATTTGAACC GTGCAACCTTCATCAAGAATGGCAAGGATGCTTGTCCTGGTTTAGTAAAGAAACTTGCTATCCAAGTCAAGTGCTCATAC TAGAGTTGGTTGTTTCATTGATTGACCTTGTTATGTCCATAAACTCAAAATGTCATTGGTTTTTTTGTAAAGAATGATTT TGCTTTTGAATCAATGCTACATTTGAAAAGCTCATTTTTTCCCTTCTACTTCTATTTCTCTACACACACATACACGCATG GCAAGTTGGCAACAAGAGGGCTCTACATATTGATGTTGTTTGGATCATACTTACTCTTCATGGAAAGAACTGAGTATGGA GAACTGAAAGAGCATGTTAACGAGGAAGAGAGTGAATTTCGCCAATTTTGATAATTGAAAGTTTCAG
CDS sequence (LotjaGi1g1v0559100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGATGACGACTCGCAAAACCAACATCCTCTTTATCACCCTCCTTGTTACCATCATAATTGCATCTTCCATTTATCC TGCTTCTGCTCATGGCAAGAAGAAGAGGCTTGCTCATAATCGCATTAAGAACTTTCAAAATGTCACTTATGATGGCAAGT CTCTCTTCGTCAATGGAAGACGTGAGCTCCTCTTCTCTGGTTCCGTCCATTACACAAGAAGCACCCCAGATATGTGGCCA GTGATTCTTGATAGAGCCAGACACGGAGGCCTGAATGTCATTCAAACTTACGTGTTTTGGAATGCTCATGAGCCTGAGCA AGGCAAGTTCAACTTCGAGGGAAACTATGATCTTGTGAAGTTCATCAGGCTTGTTCAAGAGAAAGGAATGTATGTAACCC TCAGGGTTGGACCTTTCATCCAAGCAGAATGGAATCACGGAGGACTTCCATATTGGTTAAGAGAGGTTCCAGACATCATA TTCCGCTCTGACAATGAACCTTATAAGCAACACATGCAAGCATTTGTGACAAAGATTGTGCAAATGATGAAAGATGAGAA GCTCTTTGCTCCCCAAGGAGGCCCCATCATCTTGGCACAGATTGAGAACGAGTACAACCATATCCAACTTGCTTATGAAG AGAAGGGAGACAACTATGTCCAGTGGGCTGCAAATATGGCAGTAAAACTGTATGATGGAGTTCCATGGATCATGTGCAAG CAAAAGGATGCCCCTGATCCAGTTATCAATGCATGCAATGGAAGACACTGTGGTGATACATTCTCAGGCCCAAACAAACC ATACAAGCCTACCCTATGGACTGAGAACTGGACTGCTCAGTACAGAGTATTTGGAGATCCAGTTTCCATTAGATCTGCAG AAGATATTGCTTTCTCAATTGCTCGCTTTTTCTCTAAGAATGGAAATTTAGTCAACTATTACATGTACCATGGTGGAACA AATTTTGGAAGAACAAGCTCAGCCTTCACAACAACCCGTTATTACGATGAGGCACCTCTTGATGAGTATGGTCTGGAAAA AGAACCAAAATGGAGTCACTTGAGGGACGCTCACAAGGCATTGCTCTTGTGTAGGAGGGCTATACTAGGTGGTAAACCCA GTGTCACAAAGCTCAACCATTTTCATGAGATTAGAATGTTTAAGAAGCCCGGAACTAAAATTTGTGCCGCTTTCATCACT AACAACCACACCAATGAGGCAGCTACCATTAATTTCAGAGGAAGGAACTACTTTTTGCCAGCACATTCCATCAGTGTCCT TCCCGATTGCAAGACTGTAGTCTACAACACTCAAAGCATTGTTTCACAACACAATGCAAGGAAATATGTGAGGTCAGCTG TTGCGAACAATCACAAGTGGGAGGTGTTTTATGAGGCTATTCCATCATCCAAGAAATTGCAAACAAATGAAAAAACTCCT GCAGAGCTTTATAAGTTGCTTAAAGACACCACAGATTATGCATGGTACACCACCAGCTTCGTGTTGAAGAAAGGAGACTT GCCAAAGAGGGGTGGGGCAACCCCAATTCTTCGTATTATGAGTCTCGGACATTCACTCCTTGCATTTGTAAATGGAAAAT ACGTTGGAACTGCTCATGGTACCCACGAAGAGAAATCCTTTGAATTCGAGAAAGCTGTAAACTTTAAGGTTGGAACCAAC CATATATCCATCTTGGCTAGCACAGTTGGACTACCGGACAGTGGAGCCTACATGGAACACAGGTACGCAGGACCCAAGTC CATCAACATCCTTGGCCTCAGACGTGGAGAGCTTGATCTCACTCACAATGGTTGGGCTAACCGGGTTGGTCTCAAGGGTG AGGCCAATGGCATTTTCACTGAGGAGGGATCACAAAAGGTTAAATGGAGTCCACTTGCAGGACCTGGAAGGGCAATCTCC TGGTACAAGACAAGATTTACCACCCCAGAGGGAAGAGGTCCGGTTGCCATCCGTATGACTGGTATGGGGAAGGGAATGAT TTGGGTGAATGGTCGTAGCATTGGTCGACACTGGGTCAGCTTCCTCTCTCCTCTTGGACTACCTACCCAGGCAGAGTACC ATATCCCAAGAGCTTACCTCAACCCAAAAGACAACTTGCTTGTTATATTGGAGGAGGACCAAGGAACTCCAGAGAAGATT GAGATCATGAATGTTAATAGAGATACAGTGTGCAGTATCATTGAGGAGAGCGATCCCCCCAATGTCAATTCATGGGTGTC TTCCCATGGACAGTTCCGTCCCAGAGTGAGCAATGTTGCAACACAAGCTTCCCTCAGCTGTGGAAGTGGCAAGAAGATTG TGGCGGTGGAGTTTGCAAGCTTTGGTAACCCTTCAGGTTCATGCGGAAAGTTGGTTTTGGGCGACTGTAATGCAGCTGCT ACACAGCAGATTGTTGAGCAGCAATGCTTGGGAAAAGGATCTTGCAATGTCGATTTGAACCGTGCAACCTTCATCAAGAA TGGCAAGGATGCTTGTCCTGGTTTAGTAAAGAAACTTGCTATCCAAGTCAAGTGCTCATACTAG
Protein sequence (LotjaGi1g1v0559100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTMTTRKTNILFITLLVTIIIASSIYPASAHGKKKRLAHNRIKNFQNVTYDGKSLFVNGRRELLFSGSVHYTRSTPDMWP VILDRARHGGLNVIQTYVFWNAHEPEQGKFNFEGNYDLVKFIRLVQEKGMYVTLRVGPFIQAEWNHGGLPYWLREVPDII FRSDNEPYKQHMQAFVTKIVQMMKDEKLFAPQGGPIILAQIENEYNHIQLAYEEKGDNYVQWAANMAVKLYDGVPWIMCK QKDAPDPVINACNGRHCGDTFSGPNKPYKPTLWTENWTAQYRVFGDPVSIRSAEDIAFSIARFFSKNGNLVNYYMYHGGT NFGRTSSAFTTTRYYDEAPLDEYGLEKEPKWSHLRDAHKALLLCRRAILGGKPSVTKLNHFHEIRMFKKPGTKICAAFIT NNHTNEAATINFRGRNYFLPAHSISVLPDCKTVVYNTQSIVSQHNARKYVRSAVANNHKWEVFYEAIPSSKKLQTNEKTP AELYKLLKDTTDYAWYTTSFVLKKGDLPKRGGATPILRIMSLGHSLLAFVNGKYVGTAHGTHEEKSFEFEKAVNFKVGTN HISILASTVGLPDSGAYMEHRYAGPKSINILGLRRGELDLTHNGWANRVGLKGEANGIFTEEGSQKVKWSPLAGPGRAIS WYKTRFTTPEGRGPVAIRMTGMGKGMIWVNGRSIGRHWVSFLSPLGLPTQAEYHIPRAYLNPKDNLLVILEEDQGTPEKI EIMNVNRDTVCSIIEESDPPNVNSWVSSHGQFRPRVSNVATQASLSCGSGKKIVAVEFASFGNPSGSCGKLVLGDCNAAA TQQIVEQQCLGKGSCNVDLNRATFIKNGKDACPGLVKKLAIQVKCSY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 30 | 30 | - | – | |
| TMHMM | 9 | 31 | 23 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| PANTHER | 11 | 845 | 835 | 0.0 | ||
| PANTHER | 11 | 845 | 835 | 0.0 | – | |
| Phobius | 22 | 30 | 9 | - | – | |
| Phobius | 31 | 847 | 817 | - | – | |
| Gene3D | 45 | 363 | 319 | 1.0E-99 | – | |
| SUPERFAMILY | 46 | 364 | 319 | 2.33E-100 | ||
| Pfam | 54 | 360 | 307 | 7.1E-111 | ||
| PRINTS | 58 | 75 | 18 | 5.9E-60 | ||
| PRINTS | 79 | 97 | 19 | 5.9E-60 | ||
| PRINTS | 134 | 153 | 20 | 5.9E-60 | ||
| PRINTS | 191 | 206 | 16 | 5.9E-60 | ||
| ProSitePatterns | 193 | 205 | 13 | - | ||
| PRINTS | 272 | 287 | 16 | 5.9E-60 | ||
| PRINTS | 309 | 324 | 16 | 5.9E-60 | ||
| PRINTS | 328 | 344 | 17 | 5.9E-60 | ||
| Pfam | 369 | 440 | 72 | 2.9E-23 | ||
| Gene3D | 396 | 589 | 194 | 3.1E-7 | ||
| SUPERFAMILY | 424 | 584 | 161 | 4.86E-20 | ||
| SUPERFAMILY | 602 | 751 | 150 | 3.16E-25 | ||
| Gene3D | 612 | 734 | 123 | 5.5E-18 | ||
| Pfam | 627 | 715 | 89 | 5.4E-5 | ||
| PRINTS | 637 | 651 | 15 | 5.9E-60 | ||
| PRINTS | 664 | 680 | 17 | 5.9E-60 | ||
| Gene3D | 751 | 847 | 97 | 2.6E-9 | ||
| ProSiteProfiles | 762 | 846 | 85 | 14.798 | ||
| Pfam | 765 | 845 | 81 | 1.6E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Carbohydrate binding | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
Expression pattern of LotjaGi1g1v0559100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…