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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0562200 |
| Transcript ID | LotjaGi1g1v0562200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q05142|COAT_NVMV Coat protein; TrEMBL-Plants: tr|A0A151TMA1|A0A151TMA1_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi1g1v0562200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109435639..109436632) extracted from Lotus japonicus Gifu genome v1.2.
CCAATTTCATTTTTCACTTTACTGAATAACAATTCATCAATTCTCTCAATTCTCAATATGGTATCAGAGCTCTCTTAGAG AGAGCTCTGTTGTGCACTCTGATTTTTTCCTTTTCCTATTCTGGTTCGCGAAGCTTCTTCAACCTCGAGATTCCCCTGAG CGTTTCTTGAAGCTTCTTCGTTCTCGCAACCAGATCTGGCTATGGCAGCCATGGCAACTCCTTATCCTTACACAGTTGAA GATGTCTTGGTCACTTCTTGTCCACTCTACGTGCATCCCAACGAGAATCCATCGATGATTCTCGTTTCACCTCCGTTATC TGAGAGCAATTATCACAGTTGGTCCAGATCGATGAGGATGAGTTTGTTGACGAAGAACAAACTCGGTTTGGTGGATGGAT CGCTGCCTGAACCCGCAGAGGATCATGCGATTCATCCTTTCTGGCAACGATGCAATACGATGGTTCTTGGCTGGATGATC CGTTCCATGAACGTTGAAATCGCGCAATCGATCCTGTGGCGTGAAAAGGCGATCGATGTTTGGAAAGAGTTGAAGGAACG CTTCTCACAAGCGGATCTTTTCCGAATTTCTGAGCTTCAAGAAGAGATTTACAGCTTGAAGCAAGGCGATCTTTCCGTAA CAAAGTATTTCACGGCGATGAAGATCCTGATTGTTAGTCTGTTAGTCTGTATTAGAGAGAAAGAAAAGAGGGAGTGATAA TTGGAAATAACAGAAGAAAAAGGAGGGGCGCCACAAAATTGAAACAATCTCTTGTTAGCAATCTACTTATCTACATATAT GCATTGGGACTACAGCCATGAAATGAAGCAATTTACATTGTTAGCAGGTTATTTAGGCTTGACTGATTTGCCCACTATAG TTATTATCTATTTGTTAAACTCTCACTGTATGGTGACTTGTAATTTAGTTGACTATATATAATGTAAGGATAATTAATTA AAGAGTCATTTTTATTGCTTATGAGTTGTATTTG
CDS sequence (LotjaGi1g1v0562200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCCATGGCAACTCCTTATCCTTACACAGTTGAAGATGTCTTGGTCACTTCTTGTCCACTCTACGTGCATCCCAA CGAGAATCCATCGATGATTCTCGTTTCACCTCCGTTATCTGAGAGCAATTATCACAGTTGGTCCAGATCGATGAGGATGA GTTTGTTGACGAAGAACAAACTCGGTTTGGTGGATGGATCGCTGCCTGAACCCGCAGAGGATCATGCGATTCATCCTTTC TGGCAACGATGCAATACGATGGTTCTTGGCTGGATGATCCGTTCCATGAACGTTGAAATCGCGCAATCGATCCTGTGGCG TGAAAAGGCGATCGATGTTTGGAAAGAGTTGAAGGAACGCTTCTCACAAGCGGATCTTTTCCGAATTTCTGAGCTTCAAG AAGAGATTTACAGCTTGAAGCAAGGCGATCTTTCCGTAACAAAGTATTTCACGGCGATGAAGATCCTGATTGTTAGTCTG TTAGTCTGTATTAGAGAGAAAGAAAAGAGGGAGTGA
Protein sequence (LotjaGi1g1v0562200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAMATPYPYTVEDVLVTSCPLYVHPNENPSMILVSPPLSESNYHSWSRSMRMSLLTKNKLGLVDGSLPEPAEDHAIHPF WQRCNTMVLGWMIRSMNVEIAQSILWREKAIDVWKELKERFSQADLFRISELQEEIYSLKQGDLSVTKYFTAMKILIVSL LVCIREKEKRE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 145 | 145 | - | – | |
| PANTHER | 14 | 161 | 148 | 5.7E-52 | – | |
| PANTHER | 14 | 161 | 148 | 5.7E-52 | – | |
| Pfam | 25 | 72 | 48 | 9.9E-19 | ||
| Pfam | 109 | 160 | 52 | 3.9E-7 | ||
| Phobius | 146 | 164 | 19 | - | – | |
| Phobius | 165 | 171 | 7 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0562200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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