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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0563100 |
| Transcript ID | LotjaGi1g1v0563100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger CCCH domain protein; TAIR: AT2G16485.1 GW repeat- and PHD finger-containing protein NERD; Swiss-Prot: sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19; TrEMBL-Plants: tr|A0A151TCZ6|A0A151TCZ6_CAJCA Zinc finger CCCH domain-containing protein 44; Found in the gene: LotjaGi1g1v0563100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109568623..109573171) extracted from Lotus japonicus Gifu genome v1.2.
GTGCAGGGACAAGTTGATTTTGATGACAAAAATAGCTGGGAGTATCTTTTCAAGGACTACTACATTGATCTAAAAGGAAA GCTTTCTTTAACTTATGATGAAGTCATTCAAGCTAAAAACCCTTGGAAGGGATCTGATATGCTCCTTTCTAAAGAGGAAT CACGAGATGAACTTTTTGATGCCAGTAATGATAGAGGGTCCGATTCGGATAGCTCCTATGAGAAAGTAGATTTGAGTCGT TCTAAAAAAAGAAAGGCCAAGAAAAAGGCGAAGTCCCGTTCCAAAGAAGGTAGTTCATACAGTGCAGTAACAGTGCTTGG TGCTGACAGACCATCTGCAGATGAAAGCTTTGAGTGGGCTTCAAGGGAGCTTTTGGAGTTTGTTATGCACATGAGAGATG GAGATATATCTGTTCTGTCTCAGTTTGATGTACAGGCTCTTTTGCTAGAGTATATTAAAAGAAATAAGCTCAGAGATCCT CGCCGAAAAAGTCAAATCATTTGTGATGTAAGGCTTCAGAATTTGTTTGGTAAACCAAGAGTTGGACATTTTGAAATGTT AAAGCTTCTTGAATCCCATTTCCTTCTAAAAGAGGATTCTCAGGCTGAAGATCTACAGGGGAGTGTTGTTGATACAGAAG TTAGTCATTTGGAAGGTGATGGCAATGTAGATTCATATCTGAAATCTGGAAAAGATAAGAAACGTAGAAGTCGTAAAAAG GGTGATGAGAGAGGACTTCATTCTAATATTGATGATTATGCAGCCATTGATAATCATAATATTAGTTTAATTTATCTAAG ACGTAATTTGGTGGAAGATCTACTTGAAGATACAGAAAATTTTCAGGATAAAGCTGTTGGTTCTTTTGTGAGAATAAGAA TTTCTGGTAGTGCTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGTAAATACTTGGAAAACATTAAGTTTCAC TCTGTCGTTGTATGCAATATAAAATAAACTTTGCACTATGGTTTTCTTTTTAATTTTTTTCATGGTCAGGTACATGCAAA GCACCAGAGCCATATAAAGTTGGCAAAAGGATGACAGATATCATGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGT ATCTATCGATATTATCTCAAATCAGGAGTTCACAGAGGTGATTCAACACAGCATTTTTGTTTTGCATTTTGTCTCCCTCC TTTTTGTCTTGATATTCGGTGAAAGTTGATTTTCACAGTAATTCCTTTTGAAATTAGTATTTCCCCTCCATTAAAACTTA CAGTGAAAATGTGCATCTTAGATTATCTTTTGGTAATCAACTTCACCCCTTACTGATTAAATCAATTGCTCAAAAAACAA TCTGAAGGCAGCTTGGGACTTGCAGTCACTATAGTATCCTCTAATATTTTTTGACCCAATTAGCCCCTCAAAGATACCTA ATCTTATGCGAACACTTTAGCCGGCTATAAGGACAAATGTGGTGACATTTTATATTTTTGGGGGACTAATTTAGTAACAA CAAATCTGTGGAGGACTTTTGTGGATAGTCTTGGCTAACTAATTTAAGGGTTTACTCTTAATCCTATGATGTTGAAAATA AATTATTTTTGTATTTTAAATTTTCTCATCATTGATGATTTATACAATTTAAACTTATGCTTTAGATTAATGTATTTTCT TGCATAATATATTGATTTTTTTTTTGTTAGGATGAATGCAAGCGTCTCCGTCAAAGCATAAAGTGCGGGCTCATAAGTCG GCTGACTGTGGTAATTATGTGTTTCAATAAAATCATACTTTTAGGCCTCAAATGTCTTAGTTTGCACTGAGGACACACGT TTGTACATGCAGGGTGACATTCAGGATAAAGCATTGACACTTCAGGCAGTTAGAGTAAAAGATGTGAGTTGTTTCTCTAT ATACCTTTACTGATTCCTCAATCCTCATTAGGTATCTACATTTACGTCTTACAAAATTTGTAATTTATTACAGTTTGTCC TTGTTACTTGGATTTTATTTATTTATTGAAGGAAATAATGTGAAATTTGTGACGAACTTACCTTCCATTGACTAATAAAA TTTTATTGATGTAAAGTCTTCAGTAGAAATGTTAATGCAAATTAGATTGATCAATTCATTTCCTATTTAACAAGGGTTAA ATTGATAGGTGAATTTTCCTTTTTGACGGAAGTCTTAACTCTTATGAATTATATTGGCTTCTGTCTGATTACATTCCTTC AGTTAGTGTCTAATCACATATGGGAGATGGGGCATTATATTCTAAGCGTAGTTAAAAAAATCCATTTGTCATCTCTGGTT ATAATCTGTCAATGCTTTGAATGGTATTCAGGAAACTTTTGTTCATAATATTAACTCTTTTACTATGACATTTCTGCTTT GGAAGCCAATGAAGGATTATTTCACATTGAAAGTTAATTGATAACCCATTTAGTTTAAATTGTTAATTTAATTTCTCGTT ATGTTATCAATAAATCCCCATTTTATTTCCCAATAATTTACTAGTATCAGTTTCTTACGATACATATCACAAGGTACAAA TTCTTGAGGCAGCTATATGTATCGCTGTGTGAATCTAAAATGAACACGAATCTCAATTTGTATCTCCGAATCGGAGCTGA ATCCTAGGGATTCATGATTCGCTGCTGAATCTTATTATTCCAAGTTGCGTGCAGATTGCACCTTAGTTGGGTCGGGTTGC GTGACCTGTATAGGTTTCTGGTGTTTTTTTGGGCTTTTTTTTATAGTTTTTAATAAAAAAAAGTCAGAAATAGGCAACTA ATATTCTTCCAGCAGACCCATGTCATCTTCTCATAAAAATCAAACCCTACTTTGGTCCTCACTACTATCGATTCATGACA GTTCTAGCCCACCAAAGAAATGTCTCCTTTGTTTTTTTAACGGTTCTGGTCCCCCTAGCAGAGCTTCAGCAAAACTAGGT AGGTAGCTTTCGCTAATGAGAGATGGATTTGGGGCTCCGATTAGGTCTCCTAATTCATGGAATTAGTTTTCTCTTTATTT ATGAGTTTCTTTTTTAAAGCAGCATTCTCCCTTGACTCGATCTTCAATTGAAATATCAATAGAACGTTGATCAATATTAA GGAAGAGATCGAGGATCACAGCTGGATCCTATCTGATCTTTGTCAACACAGGACATGAAGCCCCCTGCTCAAACAAAAGG GTAATCCTTTGGAATTGAAAATTCCTTTCGGATTTCTTATATTAATTATAGTGGAGGGGAGAAGATCATTTTTCATTCTA TCTATATGGGGGGGCCATGGAGCCAGGCTATGTTAGGATCCAACAAGAATTGGACCAAACGCCTGCAGTGCTTCTCCCAG TCAAATATCTGCCATTGTGGGATCTCATGGATGGTTTTTGGCTCTCTTCCATGGCCGATATCCCACCATAATCCGCCATA ATTATTTGTCAAATATGGCGGGTTTTTTGCTTTGTTGTGATCCGCCATCTGCCATTAACAGCATTAGCTTCTTGAGACTT CTCTCAATCTACTAAGAACGTGTTTCCTACGGTGATATTTATTTCCTGCTGTTGTGCACTTTTTGTCATTGTTGCGGGCG TTAACCAGGGTTGTCAAGAGCAAGCTATGTCATTAGGTTAAACTTTTTAAGAGCATTTTGGGGTTTTCCTACCATTTAAT GAAACGTTGTGTTTCACTCTCGGGAGCCTCTGCAATTAAAAACCCTACGCATCCAAGCAAAACCCCAAATTACCCCGTTT TATTCATTAGGTCAAACTTTTTAAGGGCATTTTGGGGTTCTCTTACCATTACATTAGGTCATCCTTCTTCAACCTGGAGC TTCTGCTATCTCCTCCTTTTTTTTCTCGATGAAACACTGTTTCCTCCTCCTTCCAGCCTCCTTCTTCCTCCTTCCTTCTC CTCCTTCGACAGCGTAGCGGCCATAGCGCTACATGCTATAGCGCTTTTTGGGCTTGCCGCTACACAACGCTATCCGCCAT TGCGCCATTAACAACACTGGTGTTAACCTTGGGGGGATGATGAATTATTCAATTAGTCAGATTATTATTATTTACTAGGA TCTGAATAAGTAGGAAAATAATTTCCATTTTGTACTTATTGATATTTTCTACTTTTCTTGTTAAACTTTGTGCAAGCGCC CACTATTTTTCTTCATATTTTGATTTATGGCTTGGATCTTGTATCATTTTAAGATTTATTATATGATATATCATCTTATG TTTCCATTTATAACTTCATTCTTTTGTATCATGTATCTTACGAAGCATAAAAAGCTTTGATTCATGATTTGGAAAATATG CCTTCCGATTCACGATTCAAATCTTGATTCAATAGCCATCACTCTTAAAATAAAATACTTTTCATATGAAATTTATAACC CATTTTTTGGTTATTGTCATCTAATTCAAATGTTCATTTTTCTATTTCAGTGGCTAGAAACAGAGACAGTGCGGTTAAGT CATCTTCGTGATAGAGCTAGTGAGAAAGGGCGCAGAAAAGAATATCCTTTTTTCTTCAGGAAAACTTAA
CDS sequence (LotjaGi1g1v0563100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCCTTTCTAAAGAGGAATCACGAGATGAACTTTTTGATGCCAGTAATGATAGAGGGTCCGATTCGGATAGCTCCTA TGAGAAAGTAGATTTGAGTCGTTCTAAAAAAAGAAAGGCCAAGAAAAAGGCGAAGTCCCGTTCCAAAGAAGGTAGTTCAT ACAGTGCAGTAACAGTGCTTGGTGCTGACAGACCATCTGCAGATGAAAGCTTTGAGTGGGCTTCAAGGGAGCTTTTGGAG TTTGTTATGCACATGAGAGATGGAGATATATCTGTTCTGTCTCAGTTTGATGTACAGGCTCTTTTGCTAGAGTATATTAA AAGAAATAAGCTCAGAGATCCTCGCCGAAAAAGTCAAATCATTTGTGATGTAAGGCTTCAGAATTTGTTTGGTAAACCAA GAGTTGGACATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCCTTCTAAAAGAGGATTCTCAGGCTGAAGATCTACAG GGGAGTGTTGTTGATACAGAAGTTAGTCATTTGGAAGGTGATGGCAATGTAGATTCATATCTGAAATCTGGAAAAGATAA GAAACGTAGAAGTCGTAAAAAGGGTGATGAGAGAGGACTTCATTCTAATATTGATGATTATGCAGCCATTGATAATCATA ATATTAGTTTAATTTATCTAAGACGTAATTTGGTGGAAGATCTACTTGAAGATACAGAAAATTTTCAGGATAAAGCTGTT GGTTCTTTTGTGAGAATAAGAATTTCTGGTAGTGCTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGTACATG CAAAGCACCAGAGCCATATAAAGTTGGCAAAAGGATGACAGATATCATGCTAGAAATCTTAAATTTAAACAAGACAGAGA TTGTATCTATCGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAGCGTCTCCGTCAAAGCATAAAGTGCGGG CTCATAAGTCGGCTGACTGTGGGTGACATTCAGGATAAAGCATTGACACTTCAGGCAGTTAGAGTAAAAGATTGGCTAGA AACAGAGACAGTGCGGTTAAGTCATCTTCGTGATAGAGCTAGTGAGAAAGGGCGCAGAAAAGAATATCCTTTTTTCTTCA GGAAAACTTAA
Protein sequence (LotjaGi1g1v0563100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLSKEESRDELFDASNDRGSDSDSSYEKVDLSRSKKRKAKKKAKSRSKEGSSYSAVTVLGADRPSADESFEWASRELLE FVMHMRDGDISVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDVRLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAEDLQ GSVVDTEVSHLEGDGNVDSYLKSGKDKKRRSRKKGDERGLHSNIDDYAAIDNHNISLIYLRRNLVEDLLEDTENFQDKAV GSFVRIRISGSAQKQDLYRLVQVVGTCKAPEPYKVGKRMTDIMLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCG LISRLTVGDIQDKALTLQAVRVKDWLETETVRLSHLRDRASEKGRRKEYPFFFRKT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 34 | 34 | - | – | |
| MobiDBLite | 1 | 51 | 51 | - | – | |
| PANTHER | 4 | 370 | 367 | 1.3E-218 | – | |
| PANTHER | 4 | 370 | 367 | 1.3E-218 | – | |
| Gene3D | 61 | 158 | 98 | 1.9E-34 | ||
| SUPERFAMILY | 69 | 149 | 81 | 3.05E-21 | ||
| CDD | 73 | 148 | 76 | 1.76691E-18 | – | |
| Pfam | 75 | 148 | 74 | 3.2E-16 | ||
| SMART | 92 | 153 | 62 | 0.0015 | ||
| MobiDBLite | 175 | 198 | 24 | - | – | |
| SMART | 209 | 319 | 111 | 6.6E-47 | ||
| ProSiteProfiles | 209 | 342 | 134 | 28.314 | ||
| Gene3D | 210 | 339 | 130 | 1.7E-28 | ||
| SUPERFAMILY | 210 | 338 | 129 | 2.88E-34 | ||
| Pfam | 214 | 317 | 104 | 4.3E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0563100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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