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LotjaGi1g1v0569600.1

Overview

Field Value
Gene ID LotjaGi1g1v0569600
Transcript ID LotjaGi1g1v0569600.1
Lotus japonicus genome version Gifu v1.2
Description SWI/SNF complex subunit SWI3B-like protein; TAIR: AT2G33610.1 switch subunit 3; Swiss-Prot: sp|Q84JG2|SWI3B_ARATH SWI/SNF complex subunit SWI3B; TrEMBL-Plants: tr|I1K790|I1K790_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0569600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:110246313..110252412) extracted from Lotus japonicus Gifu genome v1.2.

TAACAATTTTGTCTTATGACACATGGTCAACATGTCCAATAAAAAACCATTGATATGGTTTTCTTCAAAAGATTATAGGC CAAGATTATATTCATATATTTTCTTTGAGATATAGTCCTACTTTTGGAGTTGATATATAATTTTCGAAGATCCGTTGCGC GATTGTAATTAGCATTGGGCGGGCAAAAGGGGGTAAAATTGATGGCGACAAAGTCCCCAACCACCGCCACTGAACCTCCT CCGTCTTCCTCCGCCGGAACACCTCCACCACCTCTCCCTCCTCCTCCTCTTCACCAACCACAGCCAGCGAAACCCGACGC CCCACCGTCGGAACCCAAACTCTCCGCCACTCCAGACGCTAACGTAATCCTGGTCCCCAGCCACTCCAGATGGTTCTCGT GGGATTCAATTCACCAATGCGAGGTTCGTCACCTCCCTGAGTTCTTCGATTCCTCTTCCAAGAGCCCTAGGGTTTACAAA TACTACAGAAACTCCATCATCAAGTACTTCCGATACAATCCCAATCGGAAAATCACCTTCACCGATGTCCGCAAAACGCT CGTCGGAGACGTCGGTTCAATCCGCAGAGTGTTCGAGTTTCTTGAAGCGTGGGGTTTGATTAACTACCACCCCTCTTCGT CGTTTAGCAAACCCTTCAAGTGGGATGATGAAGATACCAAGGTTGATTCTGCTGAACCTCCTCCTCCTCCTGTTCGTGAA ACCGCTAAGAGAGTCTGCAGTGGCTGCAAAGCCCTCTGCACCATTGCTTGCTTTGTCTGTGATAAGGTTTTATATTCTCT CCTTCTCCTTCTATGAATAGCATGTTTGTTTGGTCTCATATAGTTAATTGCTCTAGAATCTAGAATCACTTCTAGTTAGG AAATTATAACTTTATTTTATAGCATGATTGTTTCCGCGGTGAAATGTTTTAGAATCACTCGACGTTTTAGCTTATGAGTA AATTGTGAAACCATAGATGCTATTAACTTCTGAATAAGAATGCCTTAGTATTATATGCCAATGGTCACAGAGACATAGCA TTGAAGTGGAAATTGAAGTGTTTTGTGGTTTTTGTTTGTGTAGTATGATTTGACTCTGTGTGCGAGGTGTTATGTTCGGG GCAACTATAGAGTTGGTGTGAGTTCGTCGGATTTTAAGCGAGTGGAGATAAGTGAGGAGACGAAGACGGAGTGGACTGAG AAGGAAACCTTGAATCTTGTAGAAGCCATTTCGCATTATGGGGATGACTGGAAGAGGGTATCTCATCAGGTTGTTGGCAG GACGGAGAAGGAGTGTGTTGCTCATTTTCTGAAGCTTCCTTTTGGGGAGCAATTCCTAGGCTCTGCTGTGAGTGATGATG GTTGTGAGTTGAAACAGCATGCTGATGAATCGGAAACTGTTGCCTCCGCTGAATCTAATAAGAGAATGCGTCTCACACCT CTTGCGGATGCAAGCAATCCTATTATGGCTCAGGTACTTTCTTGGCTTAAAAGAATAAATCTTTACTTTAATTTATTGTT TTTTGTGGAAGGAAAAACTGAAGCTCTTTTTGTTTATATAATGCAATAAAGAATCATGAAAAGCTTTCCAAATTTCTTTC TAGTGGCTGTGTCTTCATAATCATTGTATTTGGTTGTTAATTACTATACTCTGACTTGGCGTCTTGCCGTCTTATATTTT TCCCTAGGATAGAGACTGTTCGGGGTGGCTTTGTGGGTTGGTTTTGCGATTCATTTAGGTGAAGGGCTTAAGATGTTTTC ACTTAGGAATTGACCCATTCTTTATTCTAGGTGCTGCAGAATACTGGTCAATAGAAGTAGTTTACATATGTCTTGGTTAA ATTTTTAACATGGTTCATGATAGATGAACTGCTGAATGAAGAATGACTTCTTTATAATCTTGCAGGCTGCTTTCCTGTCT GCTTTGGCAGGGCCAGAGGTTGCACAAGCTGCTGCTCAAGCTGCACTGACAACTTTGTCCGACGTTTACAAGTCAACTAG AATAAATTATCGGTCACTTCCAAAGAATACATTGCAGCAAGGTGAGAATCATGGATGACTCAATTAGTTGTTATAGGCTT CTGAATGAATTGAGCTGTCAACGGTCTTAAACAGGGTTTATCTGGAGATAGATTGACCAATCCTCATCATGTACTTGATG TATTAATCGGAGTGGTTTTGAATTCTGAACGTTGTTTTGCAAGTGATCTTCAGTAAACCTCTTCATGGTGCATCAAATTT ATCGTTTACTTTTTTCCAGTGGCAAATGGGCATTTATACCCTGTTAGAAATTTCATATATTAAGCCTTCTTTAGTAATTG TTACATGTTCTTTGTGGTTAAATAGAAAGTATAATTTATTTTTAAACTCAATTTCCTCAGTAGAGTGGTGGCTTTATGTT CTATGCAGATGCTGGTGTCGCATCTAATGGTGGTAATAATTCAGATTCATTGCAAGGAGCTCGATTGAATGCAAGTTTAC AGCTTGAGAAGGATGAATCAGATGTGGAAAAGGCAATTTCTGAGATTATAGAAGTTCAGGTCTGTCCTATTTTAAATTGT TTGATGGTGTTTACACTTGTAAAGTTTAAAAATCTTGACTAAATGTTGGCTATTCTGTTATGTAGATGAAAAATATCCAA GACAAGCTTGTTCATTTTGAAGATTTGGACCTGCTGATGGAAAAAGAAAGGCAGCAGTTAGAGCAAACGAAGAATATGTT TTTCCTTGATCAGCTTACTCTTTTATTTCAAAAACCATCTGCACCAAAGACTGGAGAATATCCACAAGGCAATCATGTAA AGACGACGACTTAAGGAATGAAGAGTCTTAACAAGTTATAGATCTTAGGTTTAGCTAGTGTGTTATCATGGACTCAAGTT GCTTTGGCTGCAAAAGTCCCTACAGTATTTGTTCATTATTCTGTAACAGTTAAGTTAGCTTGATGTAAACTCTTCTTTTG AGATTAACTATTTTTAGAAGTAGTAACTTTAACACATGTGTCAAGATATCTTTTAATTTATTTATGATTTCTATTTAATC TTGAATGAGACTATACTCTTCTTTAGAGTTCAAAGTAAAGAGTTCATTTATTTTTAATTTTGTTGAGAGATATGATAATG TTATGTTATTGCATTTCATGTTACCTGATTTCCTTCAATCCCATTTAATTTTATTCCACTTATCGTCAAATATCCTTGCA CTCTTCTTTTAAAAATTAGCTATTGGACAGATATGGACCAAGACAAGGTTGCTAGTACAAAATGCTTGATTGAATTGCAT ACTGAAAGGATATACAATATACATAATCTGAGGAGCAAGAGACATAAGAGAGGAATGAAATAATGAAGTATTCCATTTTG CTCATAAAGACAAATATAAGAATCCTCTCTTGCTCATAAGAATCCTACACTGTAGGAAGGCACAAATCTGTATTTATATA GGAAAGATGGCTGTGGGGAAATTTCTCCTTCATCATGAGCATTTCTTTATATGAACTTAAATGATGTGACCGCCTGCATA AATCAAGTAGAAGCTGAATTTCAGTGCATGACATAGAAGCCACTTCAACAAGATATGCTGCATGTCAAACTAAATGCTTA TCTGTTATATAACTGAGTGTGTTACCCAAGGGGGAAAAAAGTTCACCTTCTGAATTTCGGAAGCATACTTGTCTGTTTCC TCTTCCACATACTGCATGGAGGAAATATGATAGAATCAACAAACAATTATGGCGTGATTGAGCTAACAACTTAATTAAGC ACTTATTGTCAAAAGTGTTTATTGCATAAGTAAACACTTAATTAAGCAATTATGGCGAGATGAGTTCAACAAACCTGTCC TGTCACAGTATACAGTCTGTTATACCAACCATTTGTTGCCATCCCTATAGCTGAATATAGATGTCTGCGACTCTCACCAG GATTTTGCAACGAGTACTCGATATAATAAATTCCTGAACCATTGTTTGAGTTGAAGTAAGTAAACACTGAAACTGCAATA TTGCAATATTTACTATTTACTCATGATTTCAATTTGGGATAGTCTTCCTCTGTCTCATTAAGCATCTCTTAGGAGTTTGA TAGGATCTAAAACATATGTACATTAATACTGCATAGTTTAGATCATTCATGAACATTGCATTTATAGCATATTGGGATGG ACTTTTCTTTCCTCAATCAATTCTGGCACCCACAAGCTACGGACAAAAGCTTTTTCCCATAATTGATTTTGGCTTCAAGA AGAATTTCTAAACATGCAGTAAATTTCTTGCTGCCGGCACGACAGATTCTGAAAGAAAGTGGATTCTACACCTTTTCATG TGTGTAGTATGCTTACAAAATTATAACCTTATCATAACATAGTAGCTTTAAGAGTAAAAGTATGCACCTTTAGATGATTT ACTATTTATGAGTTTAGCAGCTACACCAGGCGGTTTTCTCCAGCTTCTGTCCAGCCCACTAACCTGATAACATTCATTTT AACAAAATAGGGGGAAGTTTAGCATTAGCTGGAACGAAAATAACAAGAAAAACAGCAAATAACAGTTTTAAATGTAATCA TAAAATCACAGTACCAGAGTCTCAGCAAACTCATCAACCTTGCCAAACGATTCCATCTTAGTGAAATCCGGCCCCAACCC TGTGATAGCAACACTCACTGAAGCACCAACATGAGGGAAGTTAATATGTAGTTTATAAGGGATAAAAAAAAAAGCAAATG ACTAGAAAAGAAGCTGAAGCAATGAGACTGACAATAATACCATTGGAACTAGATGCCTCTTTGGGGTAGAATGCAGTTAA TGATTTGAACCCACTAGAGTCTCCTGTTCCTACTTCCCAATCTGACCCAAACATAGATAGAGTATAGAATTTAAGTAACT AAATTGGAGGTATGGTTTTACTTTCAAACTTGCAATTCAATTAACCTTGGGGAATCTCTATCTTGAACTTGTTCTCATCA TCAATGTAGATACGAACATCCTCAACCACATCTGAGATTCACACACATTAAAATTGATAAATATTGTGACACCAATATAT CACATGTTTGGATCAGCTTCTCTTTCACTAGAACCAATTCTGAAACCAGAAGCTAGTTGTGTGTGTTTGGTTACACAATT GGGAGTCTTAGATTCAATTCTCATGGACCATTATCACTCTTAGGTGATAGATGTTAAACAATCAACCTAGAAAGTTGATC TTGGGACAAAACTCAATTCTGCGAGAAGCTAGAGAGAGTAGCTTCTGCCGTTGATATAATCAATTGTGGAATTTTATAAC TGAATTTCACAATACTACCCTATATAAATCACCTTTTCCCATAAACATATACAAATATAAATCACTTCACTATCAACTCA TATTAACCCACCGTTATCATAAGACCATAATCAATTTTATCAAAATCAATTCTATCCACGATGCCTAACCAAACATGGAA ACTCTTCTCTCCATAATTGATTCTAGCTTCAGAATAATTGTAGAAGGATTTCTAAACATACGCATATTAATACAAAGTAA GAGTAAAAGTAAGGTAGCAAACACCATTGAGTGCCAATGCCTTCAGGACAGTAGATGGGGCAGCTGCAAATGCAGCTAGT GACGTGTAGAAAACAAGTTGTCTTCTGTTAACCGCATGTCCTTCTTCAATGGAGGAACTGAGGGAATACATACATGATTA AGCTTAAGCATGTTGTGTGACATGAAGGAAATTGAGTAGAAAAAAGCTATACTTGCGTGCTGATAGTAAACATGGTGTTT TTTTATGATGCTCCAATGTTATGGGAGGTGAGAAACCTGAACAGAAACAAAAACCTCAGCCAAATCGAACAACATGAAAA TTTAGTACTATATGGGGAGAGAGATGGAGGACCTTTGTCGGCCGCAGAGGCTGTGCGGTCGGATATTGTTGGTCGCCGAT GCAGACAACAAGACCAGGAAATGGACGCCATTCCTTTCAGATGAGCTTCTCAGCCTCCATTATTATTAATTTATTTTATT ATTATTATTGCTATTTTCAAATATTAAGTGAAAGCAATGGAGATTAGAGACTATGCCTGAAGGCATATCCAATTTCAATC CTATGTAGCTGAGGTTCTCC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0569600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGACAAAGTCCCCAACCACCGCCACTGAACCTCCTCCGTCTTCCTCCGCCGGAACACCTCCACCACCTCTCCCTCC TCCTCCTCTTCACCAACCACAGCCAGCGAAACCCGACGCCCCACCGTCGGAACCCAAACTCTCCGCCACTCCAGACGCTA ACGTAATCCTGGTCCCCAGCCACTCCAGATGGTTCTCGTGGGATTCAATTCACCAATGCGAGGTTCGTCACCTCCCTGAG TTCTTCGATTCCTCTTCCAAGAGCCCTAGGGTTTACAAATACTACAGAAACTCCATCATCAAGTACTTCCGATACAATCC CAATCGGAAAATCACCTTCACCGATGTCCGCAAAACGCTCGTCGGAGACGTCGGTTCAATCCGCAGAGTGTTCGAGTTTC TTGAAGCGTGGGGTTTGATTAACTACCACCCCTCTTCGTCGTTTAGCAAACCCTTCAAGTGGGATGATGAAGATACCAAG GTTGATTCTGCTGAACCTCCTCCTCCTCCTGTTCGTGAAACCGCTAAGAGAGTCTGCAGTGGCTGCAAAGCCCTCTGCAC CATTGCTTGCTTTGTCTGTGATAAGTATGATTTGACTCTGTGTGCGAGGTGTTATGTTCGGGGCAACTATAGAGTTGGTG TGAGTTCGTCGGATTTTAAGCGAGTGGAGATAAGTGAGGAGACGAAGACGGAGTGGACTGAGAAGGAAACCTTGAATCTT GTAGAAGCCATTTCGCATTATGGGGATGACTGGAAGAGGGTATCTCATCAGGTTGTTGGCAGGACGGAGAAGGAGTGTGT TGCTCATTTTCTGAAGCTTCCTTTTGGGGAGCAATTCCTAGGCTCTGCTGTGAGTGATGATGGTTGTGAGTTGAAACAGC ATGCTGATGAATCGGAAACTGTTGCCTCCGCTGAATCTAATAAGAGAATGCGTCTCACACCTCTTGCGGATGCAAGCAAT CCTATTATGGCTCAGGCTGCTTTCCTGTCTGCTTTGGCAGGGCCAGAGGTTGCACAAGCTGCTGCTCAAGCTGCACTGAC AACTTTGTCCGACGTTTACAAGTCAACTAGAATAAATTATCGGTCACTTCCAAAGAATACATTGCAGCAAGATGCTGGTG TCGCATCTAATGGTGGTAATAATTCAGATTCATTGCAAGGAGCTCGATTGAATGCAAGTTTACAGCTTGAGAAGGATGAA TCAGATGTGGAAAAGGCAATTTCTGAGATTATAGAAGTTCAGATGAAAAATATCCAAGACAAGCTTGTTCATTTTGAAGA TTTGGACCTGCTGATGGAAAAAGAAAGGCAGCAGTTAGAGCAAACGAAGAATATGTTTTTCCTTGATCAGCTTACTCTTT TATTTCAAAAACCATCTGCACCAAAGACTGGAGAATATCCACAAGGCAATCATGTAAAGACGACGACTTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0569600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATKSPTTATEPPPSSSAGTPPPPLPPPPLHQPQPAKPDAPPSEPKLSATPDANVILVPSHSRWFSWDSIHQCEVRHLPE FFDSSSKSPRVYKYYRNSIIKYFRYNPNRKITFTDVRKTLVGDVGSIRRVFEFLEAWGLINYHPSSSFSKPFKWDDEDTK VDSAEPPPPPVRETAKRVCSGCKALCTIACFVCDKYDLTLCARCYVRGNYRVGVSSSDFKRVEISEETKTEWTEKETLNL VEAISHYGDDWKRVSHQVVGRTEKECVAHFLKLPFGEQFLGSAVSDDGCELKQHADESETVASAESNKRMRLTPLADASN PIMAQAAFLSALAGPEVAQAAAQAALTTLSDVYKSTRINYRSLPKNTLQQDAGVASNGGNNSDSLQGARLNASLQLEKDE SDVEKAISEIIEVQMKNIQDKLVHFEDLDLLMEKERQQLEQTKNMFFLDQLTLLFQKPSAPKTGEYPQGNHVKTTT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 50 50 - –
MobiDBLite
mobidb-lite
15 45 31 - –
PANTHER
PTHR12802:SF44
37 465 429 2.5E-214 –
PANTHER
PTHR12802
37 465 429 2.5E-214 –
SUPERFAMILY
SSF46689
53 151 99 1.52E-30
IPR009057
ProSiteProfiles
PS50934
56 151 96 24.339
IPR007526
Pfam
PF04433
59 142 84 1.3E-26
IPR007526
Gene3D
G3DSA:1.10.10.10
62 146 85 3.5E-31
IPR036388
Gene3D
G3DSA:1.10.10.60
227 277 51 1.5E-17 –
ProSiteProfiles
PS51293
227 278 52 17.326
IPR017884
SMART
SM00717
228 276 49 5.3E-11
IPR001005
SUPERFAMILY
SSF46689
228 280 53 1.35E-10
IPR009057
Pfam
PF00249
230 273 44 3.2E-12
IPR001005
CDD
cd00167
231 273 43 1.54212E-9
IPR001005
Pfam
PF16495
391 456 66 5.9E-10
IPR032451
Coils
Coil
425 445 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0569600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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