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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0576200 |
| Transcript ID | LotjaGi1g1v0576200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Telomere-binding family protein; TAIR: AT1G07540.1 TRF-like 2; Swiss-Prot: sp|Q6R0E3|TRP5_ARATH Telomere repeat-binding protein 5; TrEMBL-Plants: tr|I1MDE4|I1MDE4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0576200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:111348680..111354657) extracted from Lotus japonicus Gifu genome v1.2.
GTGGTTTTCAGAGGGGTTTTACTTTTCTCGCTCAGATCACAAGATGATAACAACAACTTCAGATTTCAGATTCTGAGACA CAACAACAACAACAACAACAACAACAACAACAACAACGCAATCTCACACGTGCATCACAAACCAAACCAATTCCTCAAAT GGGTCTTGTCTCAATCCATGTTTTCTTGCATAAATGAGACAATTCTTGTCTCTGATGGAGTTCTTTTCGGTTTGAATCCT CTGATCTCACATTTGCCTGAAAATTCCATGAATTTGCCGAAATTTCAGTTCTTTGGGGGTTAAATTTTTGATCTGTCATC AACAATCTGTGTTAAAAGGTGACCAAACATGTTTAACTTTGATGGGTTTTGTTTTGTTCATACCCAGAATTTTGTTTGTT TGTTTTTTCTTTTTTAACTGCTGGGTTTATCCTTGGGGTTTGTGATTACCTTCGTTCTGGGAAAAAGATGAAATTTTGAC GTGTGATTTCATATTGGGTCTGTTTTGTGGTTCCTGAACAAAGTTTTTTCTGATATCTTACAATACTTGGGCAGTTTCAT TTTGTGTATTCCCTTCTGCTTCTATGTTTCCTGCATCCATAGTTTGGTTGATCCTTCATTTTCTTCAACTTGAGCTTGTG ATCAGTTGATCTCTGATTTCATGTCTGCACATGGTGGCGTATGCTTTTTCGCTTTTGGTTGATGAATTGGTTGTTTTCTG TGATGGATCCTCATCCTGGATTTAAGATCGCTTTATGGTTTTATGATCGCTTCTCTTGAACTTGTCTGGAATCTGGTCTC GCTTTGGAATCTCTTTAATTGTGTGCTTATTTAACTTTTATGTTCCATAATTGTTTGGTATTTATGTTTGCAAATTATAT CTTACACTCAGCTGAATTATCTTCTGTCTTCATCTGTATCTGTTTTCATTTTCTTACTCCTACCTTCAAAGGTTTTATCT TTTTTGTCATGCACCTATTTTCCCATTTTATAGAGATGAAGTTATATACATACATATATATTTAGTCAATGATCTTCGTC GTTAAGGTGCTTGGATCCAGAGGAAGAGACTGAATTGGCTCCTAGGAATGTCCTATTTGGTTTCGTAAGGATCGGGGGCC TCAAAACCTCAACTTCAGGTTTTGACATATGGGTTGAGTTTTGTTGCATAACAAAATGTAAACTGTTGAAATATTGTTTC TTGCAAGTGAAAAAGATGAATTTAATCTTTCTTCAGAAATATTCTGTCTTCTCGGGCTCCATTGGTTTGAAAGAGTGGTT TAGTGGAGTTTATTGTCTATCAGACAACATGCTTTATTATTCACAACTTAATTTAGTAGAGTGATTCTTAATTTGGTGTA CATTTATTTTCAGGCTTTCAAATTGAGACTGGTGGGGTCAAGCGAGTATTCAAGTATTTTGCACAATGGATATTGGGTTA CTGATGTTATGCGTTTAATCAAATCCTTATTTTGACATGGTTCCAGCGATATGGTGTTGCAGAAGAGGCTAGATCATAGA TTTAATGGCTATCAGGTGCCAACCAAGCCCCGAGCTACCCGCTCCCCTAGGGTAAATAAGTTCTGCTTCTCATGGGGTGC TGATTAATACTATCTATTTATTTTATTGATTATGAAAACAATCAATGTGATTTTTTAATGTGATGTTTTCTAGGGGAGGG CTACATTTCAAAGAAAGGTGGAAGACAACCAAATGCTCGCATTTGAGTTATTGGCCACCGTAGCTGGCGATTTACTGCAA GAGAATCAGAATCCTACCACTTCTTGTAATGGATCATCAGAAAAGGATCAGGGTGGATTTGTTAAAGAAGAAAACCAAGA TGCAAATAAACCATTCAAAGCTGAGCTTTCTGATGAAGCAAGTTGTGACAGAAGATATCAACAATTTGTTAAAGAAGGGT GTCTAGATGCAAATATGCCATTGAAAGCCGAGCTCTCTGATGAGGGAAATAGTGATAGAAAATCTATCTCTAATCTATCT TCAGAAGTGTACGATAAACATTGCTGTATGAAGGAATACCTGCATCCTGAAATTGATGGTCATTCATTCATTACTTCTAC AGTTACAAGTTCTAGTTGCTCGGAGAGGTTTTTGGCTGAGATGGTGGTGGATGAAAGAAGGCATAACGAAATGAAAAAAT CTGCTTGCAAAGTTGAATTAGGTTCCACTGGATGTCCAAATAGTATTGGTTGCAAGTTAGATGATGATGCAAGTAAAGTA AATGACGAGCTGCATAAGCTTGAGAAAGTACCAATTGGTACTGGGACTGGTGTGTGCTGTTTTGAGGATCCCTTGGATGA AAAACCTCCGGCACTAATCAACACCAAGTTGTCTGGGTATGACGACAATGTACCAGTAGTTAGTAGAGATGATGACGAAA ACTTTTCCGGGTGTGCTCACCCTAGTACCAAAACAAGGCCCTTTAGGCCAAGAACATGTATAGTTGAACAAAGAATAGGT AAAAATTTGGCTTCTAAATATCAAAAGGTTGCTCAAGAATCAAAGCATGATACACTTCCTAACAGTGGTGAGTTCATGCT TATCATATGGAATTTCTGGCTTTCTTGTTTCTTCACCTATGCTGCATCTTTTCTTGTTTACTAATCTGTTTTTCAATTGT AAACATGTTAGTTTCTGATGGAAATTTGAAGCCAGTTTATAGCAGTAGGAGGGACTATTATAAACGCCAAAGATCTGAAA TGAATATTCCTTTCAAAAAGAGGAAGCTTTTTAACTGCAGCTCTGGTTCAAATTCTAACGGATTTATCAGAAGTGGCCGC ACTTATAAGTCACCTGAGAATGACATGAATCAAGGTGTTTCTTATTCATCTTCTGGGATCAGCAAAGGTTTTGCTCTAAA CAACCTCCTCGTATTCAAGCCACTGAATTTATTGGTCTCGGAAATCTGTTGCTAAACAAGTACCAAATATTTGATGCAGA TCCTGGAATGGAAACACATAAGCACTCTGCATTACAATCTAGAAATCCTCATGGTATGGGAAGATTGAGGGGGTGATTCT TTATTACTCTTTTACTTGACTAATGTCTTCAAAGTGGTTCTTACACGAAGACATTTTTTCTTTTAATCAGTGAAACTTAG GATCAAATCTTTTAGAGTGCCAGAGCTTTTTATCGAGATTCCTGAAACTGCAACCATTGGGTCCTTGAAGGTATAATAAA ATTCTATTCTGTCATATACATAATCGTCCTCTCTTGTATTTAGATGTGAATGATGGATGACATGAGACATCTGTTTGTGT TTTCATGGCCTGCTCTTTCTACCATGTGGTGTGAGAGTGATCGGATCAGGATCGTCTCAGGTGAAAACTTCTCATGACAC TATCATGTTGAAATCTGATGTTTATCTCTCTCTTCATATGTACTAAATAAGTGAATCCCTCTGAATATTTATGAAGAGAG AGATAAACATAAAGTTTCACATGACATTGTCATGTAACATGGGAGGATCATAATCCGTGTGATCATAGTTGCATCTCTCA CATAAGTGGCTAACATTTTGGTCTGCAGAGGGCAGTGATGGAGGCAGTGACTGCTGCACTTGGAGGCGGATTGCGAGTCG GTATGATTTTCCATGGAAAGAAGGTTAGAGATGACAGCAAAACTCTAATTCAGACTGGAATTTCTCATGATAACCAGCTG GATACTTTGGGCTTCACCCTGGAGCCTAATTCTTCAAAAAATATACCACTGACATGTGCTGCAGATTCTCTCCATGTTCT TGGTGGGGACATGCCTCAGTCTTTAATAGGGTAATGCATAGCCTCCAACTGAATGCATTAAAGTTCCCAACTACTTGGAA CTAGAATAAGCTGTCACTGCTTTTTGGTTTAAATTTCATGGAAGGCGTGTTTGGAAATCCTTGTAAAAATGATTTTATAG CCATAATCAATTTTGGGGAGAAGCTTCTGTGGGGAGCTTCTGACTCTTAGATTTGATTCTGAGAAAAGAGAAGTTGTTCC TAACATGCTAGAAATGTTAATTATACACACAATATTTCCCTCTCATAACTCTCATAACATAATGGGCCAAACTCACTTTA TATGAATCATGTGAGTTGCATTACATTTGCAACATAACTCATTTTCATAAAGAGCACCGAATATGGTGTTTAGTATCATT TTTTTTTGCATAGCCCATAGTTTTCTATAATTGTTATTTTTGTTTTTATCTAAGAGTAGATGATTAATATTCAGGCATCG CTCCAGTCCAGCTGTAACTCATGAGAGGATTAAGGGCTTCTCTAACATGTTACCTGAGCATCAAGTAGCCAGTTTAGGTA ATTTTGTTGAAAGTGATCATGATTCAGCACCTTCTCCTATCAACACATCAGTTGAAAAAAACTTGAAAGATTCTAAAGAA CTTGTTACTGTTCCTGAAATGAGTAAGGATGCACTAGCTGTGCTACCTGTGCACCAGAAATCAAAGCGAACTGAGAATGT TCAGCGTCGAATTCGTAGACCTTTTTCTGTTGCTGAAGTGGAAGCACTGGTCCAAGCCGTTGAGAAACTGGGAACTGGAA GGTAAGATCTACCCCAACTAAATAGTTATCCTTGCATTACATGTTTTTATTTTCTGTTTCCACTAATAATAACAAAAATG TTATTTTGTTTCCATTTTAGTTTTTTTTTGAATATTTGTATAAGTAATAGTGAAAACAAGGGGACACAATTGTACCTACT ATCTAATGGTAAGAGATGGAAAAAAAGAGTCTTAAATCTGTTGTTCATTTTGTATTTTCTTTTGACAGTCCCTTTATAAA TTTTTTTTTTGGTGCCAAAAATCAGGTGGCGTGATGTTAAACTTTGTGCTTTTGATGATGCAAAGCATCGGACATACGTG GATTTGAAGGTAAAAACTTAAGTGACCCTTGTGGATAAAGACATTCTTATTTAGATATTGTATCAAGGCAAGTAATTGCT TTTGTATTAGGTAAGCTATCTATTGCTTCATTTGTCCTGTTTCTCTCTCTGATTGGCACTGATTGAAATATTTTGTCCCC AAATTCTGCCCTACCAATAATTTTGTTTTACATATCAGTTAAAAATCACCATGTAAGTTTGTAACTCCATTAGTGGGACA TGAAATTGAGACACCATTTGGGAACAGAAGATCTTGATCCGATTAGTACCTGTTCTATGTGAATGTTCATTGCCTAATGC TCTTTGTCACTAGTTTGGTTTATCACTTACCAAAATAGAATTTGATATATAAAAGTTTAAACAACATGTTTGTTCTGTTT TGCTATGAATAAAAGAAGAGCAGAGCAAGGTCACTTTCATTAGCATTATCAATTTAGTTTCCTTATTTAGCATGGCAAAA GTGTTGGCATGTGAATATTGGTATGGGATGGTGCAGGATAAATGGAAAACATTGGTGCACACGGCAAGAATATCACCTCA GCAGAGGAGGGGGGAGCCAGTTCCCCAAGAACTTTTGGACAGGGTCTTAACTGCCCATGCTTATTGGTCCCAACAGCAGA GTAAGCAACAGCCAGAAACTTGCCTTCTCCTTCAATGAAAGGGGTTGTCAGCAGCAGCACATGGCTTTGTAGATAGGTTG GGTGTGCAGGTTTATGTCCCTTTTGTAGGGGGTTGTTATCATTTCACTTTTTTTTTTGTATCTATGAAAAATATCTGTTT TATCACTTTATCTACCATGTAAAAATTGGTGACAAGGAAGAAAGTGAAGCCTGGAGAGAATTTGTGACATTCTCTTTACT CTCATGGAGAGGGCTCCTTCTTGTAAATGGTTGATGCAATAAAGAGCTTGCCAATTGTTATGTTTCAACATTTATCAGAG ATATGACTGATTTATTCTCACAACCGACAGTCATGAGACTAATCCTTTCAATGTCTGGAAATCATATTAAGTGTGTATGT CTCTCCTAACTAATCATTTTTCATATACACCGCCCAATGATCAAACCCTTGACTAAAT
CDS sequence (LotjaGi1g1v0576200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTTGCAGAAGAGGCTAGATCATAGATTTAATGGCTATCAGGTGCCAACCAAGCCCCGAGCTACCCGCTCCCCTAG GGGGAGGGCTACATTTCAAAGAAAGGTGGAAGACAACCAAATGCTCGCATTTGAGTTATTGGCCACCGTAGCTGGCGATT TACTGCAAGAGAATCAGAATCCTACCACTTCTTGTAATGGATCATCAGAAAAGGATCAGGGTGGATTTGTTAAAGAAGAA AACCAAGATGCAAATAAACCATTCAAAGCTGAGCTTTCTGATGAAGCAAGTTGTGACAGAAGATATCAACAATTTGTTAA AGAAGGGTGTCTAGATGCAAATATGCCATTGAAAGCCGAGCTCTCTGATGAGGGAAATAGTGATAGAAAATCTATCTCTA ATCTATCTTCAGAAGTGTACGATAAACATTGCTGTATGAAGGAATACCTGCATCCTGAAATTGATGGTCATTCATTCATT ACTTCTACAGTTACAAGTTCTAGTTGCTCGGAGAGGTTTTTGGCTGAGATGGTGGTGGATGAAAGAAGGCATAACGAAAT GAAAAAATCTGCTTGCAAAGTTGAATTAGGTTCCACTGGATGTCCAAATAGTATTGGTTGCAAGTTAGATGATGATGCAA GTAAAGTAAATGACGAGCTGCATAAGCTTGAGAAAGTACCAATTGGTACTGGGACTGGTGTGTGCTGTTTTGAGGATCCC TTGGATGAAAAACCTCCGGCACTAATCAACACCAAGTTGTCTGGGTATGACGACAATGTACCAGTAGTTAGTAGAGATGA TGACGAAAACTTTTCCGGGTGTGCTCACCCTAGTACCAAAACAAGGCCCTTTAGGCCAAGAACATGTATAGTTGAACAAA GAATAGGTAAAAATTTGGCTTCTAAATATCAAAAGGTTGCTCAAGAATCAAAGCATGATACACTTCCTAACAGTGTTTCT GATGGAAATTTGAAGCCAGTTTATAGCAGTAGGAGGGACTATTATAAACGCCAAAGATCTGAAATGAATATTCCTTTCAA AAAGAGGAAGCTTTTTAACTGCAGCTCTGGTTCAAATTCTAACGGATTTATCAGAAGTGGCCGCACTTATAAGTCACCTG AGAATGACATGAATCAAGGTGTTTCTTATTCATCTTCTGGGATCAGCAAAGATCCTGGAATGGAAACACATAAGCACTCT GCATTACAATCTAGAAATCCTCATGTGAAACTTAGGATCAAATCTTTTAGAGTGCCAGAGCTTTTTATCGAGATTCCTGA AACTGCAACCATTGGGTCCTTGAAGAGGGCAGTGATGGAGGCAGTGACTGCTGCACTTGGAGGCGGATTGCGAGTCGGTA TGATTTTCCATGGAAAGAAGGTTAGAGATGACAGCAAAACTCTAATTCAGACTGGAATTTCTCATGATAACCAGCTGGAT ACTTTGGGCTTCACCCTGGAGCCTAATTCTTCAAAAAATATACCACTGACATGTGCTGCAGATTCTCTCCATGTTCTTGG TGGGGACATGCCTCAGTCTTTAATAGGGCATCGCTCCAGTCCAGCTGTAACTCATGAGAGGATTAAGGGCTTCTCTAACA TGTTACCTGAGCATCAAGTAGCCAGTTTAGGTAATTTTGTTGAAAGTGATCATGATTCAGCACCTTCTCCTATCAACACA TCAGTTGAAAAAAACTTGAAAGATTCTAAAGAACTTGTTACTGTTCCTGAAATGAGTAAGGATGCACTAGCTGTGCTACC TGTGCACCAGAAATCAAAGCGAACTGAGAATGTTCAGCGTCGAATTCGTAGACCTTTTTCTGTTGCTGAAGTGGAAGCAC TGGTCCAAGCCGTTGAGAAACTGGGAACTGGAAGGTGGCGTGATGTTAAACTTTGTGCTTTTGATGATGCAAAGCATCGG ACATACGTGGATTTGAAGGATAAATGGAAAACATTGGTGCACACGGCAAGAATATCACCTCAGCAGAGGAGGGGGGAGCC AGTTCCCCAAGAACTTTTGGACAGGGTCTTAACTGCCCATGCTTATTGGTCCCAACAGCAGAGTAAGCAACAGCCAGAAA CTTGCCTTCTCCTTCAATGA
Protein sequence (LotjaGi1g1v0576200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLQKRLDHRFNGYQVPTKPRATRSPRGRATFQRKVEDNQMLAFELLATVAGDLLQENQNPTTSCNGSSEKDQGGFVKEE NQDANKPFKAELSDEASCDRRYQQFVKEGCLDANMPLKAELSDEGNSDRKSISNLSSEVYDKHCCMKEYLHPEIDGHSFI TSTVTSSSCSERFLAEMVVDERRHNEMKKSACKVELGSTGCPNSIGCKLDDDASKVNDELHKLEKVPIGTGTGVCCFEDP LDEKPPALINTKLSGYDDNVPVVSRDDDENFSGCAHPSTKTRPFRPRTCIVEQRIGKNLASKYQKVAQESKHDTLPNSVS DGNLKPVYSSRRDYYKRQRSEMNIPFKKRKLFNCSSGSNSNGFIRSGRTYKSPENDMNQGVSYSSSGISKDPGMETHKHS ALQSRNPHVKLRIKSFRVPELFIEIPETATIGSLKRAVMEAVTAALGGGLRVGMIFHGKKVRDDSKTLIQTGISHDNQLD TLGFTLEPNSSKNIPLTCAADSLHVLGGDMPQSLIGHRSSPAVTHERIKGFSNMLPEHQVASLGNFVESDHDSAPSPINT SVEKNLKDSKELVTVPEMSKDALAVLPVHQKSKRTENVQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFDDAKHR TYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLTAHAYWSQQQSKQQPETCLLLQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 696 | 696 | 5.5E-254 | – | |
| PANTHER | 1 | 696 | 696 | 5.5E-254 | – | |
| MobiDBLite | 58 | 85 | 28 | - | – | |
| MobiDBLite | 384 | 406 | 23 | - | – | |
| SUPERFAMILY | 404 | 492 | 89 | 1.91E-8 | ||
| CDD | 409 | 474 | 66 | 0.00121323 | – | |
| Gene3D | 591 | 695 | 105 | 1.2E-44 | – | |
| ProSiteProfiles | 598 | 657 | 60 | 13.378 | ||
| SMART | 602 | 655 | 54 | 2.6E-7 | ||
| CDD | 604 | 654 | 51 | 8.74259E-18 | – | |
| SUPERFAMILY | 604 | 685 | 82 | 3.3E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0576200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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