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LotjaGi1g1v0579900.3

Overview

Field Value
Gene ID LotjaGi1g1v0579900
Transcript ID LotjaGi1g1v0579900.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Telomere repeat-binding protein 5; TAIR: AT5G13820.1 telomeric DNA binding protein 1; Swiss-Prot: sp|Q9FFY9|TRP4_ARATH Telomere repeat-binding protein 4; TrEMBL-Plants: tr|K7MT46|K7MT46_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0579900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:111933460..111938872) extracted from Lotus japonicus Gifu genome v1.2.

ATCCAAGTGGTTTTGCTGAGGAACCCTGCTATAGCCGGTTTCCTGACATGGTGCTACCGGCTAGTACCTTCCTAGGATAT GAGTGAGTGGTCAAACGTTTGGAAACAGTTACAGTTGGGGTTGTGAATGTGAGGGGTTTAAGAACACAACAAACAGGGTT GGGTGGTTTTCAGGGGGTTTTTGTTGATCAGACATAGCCCAAGTCTCTAGGTGAGAATCATTTATTTATTGTCAATTCTT TTTCACAGGAGTGTTTTTCATTTTGGTGCAAAGTAATTCAACATTATTAAAGTTTTTCTTTATGGGTATTGTATTGTATT GTATGTACTGTTTGTTGTTCATCATTCCTTCAATTGAATCAGTTTCATCATTGGTGGTCAATTTGCATTTCAATTATTTT CTGGGTTCAATCAGGCTCCTTTCATACCTCTTGAGATTCATTTCATTTTTTACATGTTTCTAATTTTACTGTTTTTTATT TCAAAAAATAAATTGATCTCTCTTTCTTAAATTAATAGTGGTAATAAATTTATTAAATTGTCAGATGTTGTCTCCTTAAA AGGGTCACTAGGTGTCTGAAGATCCATTTGGCCAATACCTTAAAAGGGTCACTAGGAGTATATACTATTTCCCCCTGATT TTTCCAGTTTTTTATTTGCTTGTTCTTGGTGTTTTCTTTAATTTCTATCTGATCGTGTATGGATAATTATGATTAATGTG TTGCAATTCCGGCTTTTTGTTTGTTTGTGTTTGGAAATTAACTAACAGGGCTTTATTTATTTGCTTTCAACTTCTTGTTC CTTATTTGATTGTTTGATTTTCTTGGCCAAATATTGAAGGGTATGCTATCTGTTTCAGTTTCAGACCTGTTGAGAGTGTC TTCAACATGGGGTGAATAGTTGTTCTTCTAATGTCAACGTACATGTAAGCATTTCAGTATCTTTCTTTATTGATTTCTTT TGTGATTAGTTAATAATGGCGGCCGTGGTACCTTATCTTTAGTGGGAGCTTCAAGATTCCAGCTACTGCTAATGTCATTA CCATTCAACCCATTCCCAGAAAGTTATTACCATATATGTGATACATGCTATTATTCATTCAATGTCAGTGTAAATATTGG TATTTTCTCTCTACTTAATTTTCCTTTAAATGATTCATTGTCATTGTATCCTTTTATTTCATATTCATTCTTGTGTGTAA GCAAGATTTAATTTAAGAATACTAATTAGGCACAGTAAAAATCTTGTTGTTTTGTTGCCTTTTCATCGGAACTAGTTTTT CATATGCAACTTGGTTCAGCCTCTTGAGGCCCATTAGTCTACTCTAATTTAATAACTGCTGAATGGGATTTGATTATGCT GACAGGTTCTGGTGTTAGGAGTGTGCAATACTCAAGGAAGCTGGCTATATGTCATCAAATGACTTTTTCTTATAGGAATG ATTTTCTGAGATATGGTGTTGCAGAAGAGGTTGAACTACGGTTTTGATGGCTATCGGGCACCTTCCATTCCTAGGGCTTC AAGATCTGCTAGGGTAAGCAAATATGATTTTCTTTTCTAACATCAGTCCCTTGCTGAGTACATCGTTGGATACACTTGTA TCATGTGTGAAGTTTCAACATACTGATAATCTTATGAACGGTTCAGGGGAGGGGTACAATCAGGAAGAAGCCTGACAGCA GTCAGATACAGGCATTTGAAATTTTGGCTAGTGTAGCTGGAAACTTTTTGCAGCAGAATGAGAGTTCCATTCCTGATAAT GCTGCTGATTATGCAAAAGATCCTCACTCTTTTGCTGGTACTAACATAAAGGACAAACAAGAGCATGAAGCAGGTTTATT TAATGGGGATCTATTTGAGCATGGGAATTGCAGTGGAATTTCCTCTGCATGTATCCCTAGTTTACAAGGGAAACATGATA ACCAAAGGTAATTAATGTTGAAAAGATATTTGTTTGCGAATGAAAAGTCTTTGTTCAATGATCAGCTTAATGGCTTTAGA AACTAGTCATCGCTCAAAATTATTATGATGTTCTATATGACATTGACCAGACTCTTGGATGATTCATCTATTCTTGGCAA TGATCTTGAAGGCCAAGGACAGAATGTCCTTGAGAGGGAAGATGAACGGGTAAAAGGGAGAAAAACAAACGAGAAAATCA TCCGCATCAAGGGAAGTTCTAAGGGATTAACAGAACCGAGCCATAGAGCATCAAAAGATTGTAGTTCAGAAAATTTTGTG GGAAAGCCTTCATTGGAGAATCTTGATTCTTTACCCAATGGTTCCACTTCTAGGAAATTAGTTACTAGAGATGATGACGA AAACTTTGTTACGTGCACTAAACTCAGCTCCAGGAATAACATATCTGGCCCACTACCAGATGTGTTAAAATTCAAGGATG CAAGTCCTTTTACAAATGGTATGTAGCTTTAACTGCTGATTTTTATTATTAATATAGATCAAGCCTCACAACGAGAAAAT CTTCGGTACTGCAGCAGTAACGAACACTCAGTCCCTCTCACAACTAAACAGTTATCTCCAATTTTGTGTGACTATTGAGT ATTGACAGTTCCATGAATTGTTTTGTCATAGATGAGAACAATAGTAGGGACAATTCTGTATTTGAAATTTCACAAAGAAT GTATCCATTTAAGAAGAGGAAGTTCTTCCATCTGGCCTCATCAGCTGCATCTGATAGAGGCTCACACTGTCAAGGCATAT TTGATTCTTCTGACACCCGGGTTAATGGCATAAACGAATGCACAGGTGGAACAATGCGTAGTTGCTTGCTTTGTTTTTCT TTGTAATGGATATTCCCGTTTAGGCTTGTATTCAGTTTTGGCCTAATGATCCAAACCATCTCATGCAGCAATTGAAGAAT CATCCTCAGAAGCTGGTCAACAAGGACATCATGGGTCCAGGGGTTGTAACGGTAGGAAAGTCGACGAATGATTGACAAAA TTTACTCTTAATTTAGTCTGACTCACATGATTTTCATCTCTTCTTTGCAGTGAAGCTTAGCATAAAATCCTTTAAAGTCC CTGAGCTTTTCATTGATATACCTGAAACCGCAACTATCGGTTCACTGAAGGTATGTGATTTAACTTGTTTGAGGGACACA ATGATAACATGATTGACACACAATTTTAGGACTAATTTAGTTGAGCCGATGATGCTTAACTGAAGCAATAAAAAAGGGTA TACATGGAGCTATAAAGCTCCGCTGTGCGCAAGGTCTGGGGAGGGGCAGGACCCACTTTGTAGATCTAATGATGGCAGTA TTACCTTGCAATTTTGCAAGAGGCTGATTCTACAGCTCAAACCTGTGACCCGCAAAGTCATATGGTAGCTGGTAGCAACC TTACCATTGCGCTGAGGCTCGCCCTCCCGCGAGCTTGACTGAAGCAATGGAGGCTAAAAAGAAACTAGCATGTGGCTATT TTATGGAAAATCTGAGCCTTGGACCAAACTACAAACCACCTTATTATGTCTTCTTGCCTCGAAGGGAAAATAAATTTCAA ATGTAAGAATAACTATAGTAGGCAATCTAGATCCCCGTAAGGGTGATGACACAAGTTCAAACTCTGCGAAAGTCATCTAT TGGGAAAGACTGCCACAGTTTCCTGAATGGGTTTATACCTGCAAAAGACCCAAGAAATAGTAGCCAGTCCAGTGTACCTT TACCCCTACTCACTATGTTTAGTTATTGTTATTATTAGCAGAGGACAGTGATGGAGGCTGTGACAACTATACTTGGAGAT GAACTACATGTGGGAATCCTTCTTCAGGGAAAGAAGGTCAGAGATGACAGCAAAACTCTAATCCAGACTGGGATATCTCA AGACGACAAACGTCATAGGTTGGGGTTTATGTTGGAGCCGAGACATCCTCGAATTTCTCCTTCTTCATACAATGAAGACC CTTGTCTTCTTAACCCCGGTTCACAACAGAAACTATCCAAGTAACCATTCAATCAAGCATTACCTTTCATTTCTCTTTCA TCCATGGAATTAACTAATTTTGATTATTGTGCATGTCAGTACTTAGCAAGCCTATCAACATTAATAATTTATTCATCTTC AATTAGCAGGCAATCAACATCTTTAATGTTACAACAAGGACCATATAATGTATCCCAAGAACGTTCGCTGATCAAAATTG AAAATTGTGCTGAAGGTGATCTTAATATGGTCTCCTCTCTAGCAGATACTTCAGCTAACAATAACATGTCAAAGTGTCGC GCTCTGGTAGCAGTTCCTGCCATTAACATGAATGCGTTAGCTGTGGTTCCATTCCGCCGCAAATCTGGGAATCCTGACTA TGCACAGCGCCGAATCAGGCGGCCGTTCTCTGTTTTAGAAGTCGAAGCATTGGTTCAAGCCGTTGAGAAACTTGGAACTG GAAGGTTTAATTTAAGAATTTCTATCTCTTTTACTTTGGCTAATGTGTAGTGCTATAAATTTTAGTGCTGAATATTACTT GTTTCTTGCAGGTGGCGTGATGTCAAACAACGTGCGTTTGACAATGCAAAGCATCGAACTTATGTGGATTTAAAGGTGAG CAATACATGCGATTGATTGTGGAGTATTGGAAGTGATAGTCTGATTAATGATGCTTTTCTTAGCAATTATTTTACCTTTC TCCCTGCGTGCATTCATAAAAGCTAAGCTAGCTAGGTTGTTTTCTGCCAAATAATGGAAGAGATGGCTTATAACTTTGAA TACAAGATACTTCCATTCATGAATCATCATATTCCTTAGTAAGTACTCTTCAAGTTTGCAAGTTATATTTTCAGATCTTA TTTATGCTTCTCCTTGTTAGAGAACTTCTAGTTGTCCTTGGATCCACACACTCACACTCGGCACTAAAAGCATTCTACCA TATATAAGGGCTTATTTGGCCATATTTCTAGTCAATGTGAGACTTGTCAACAAATATTTCTATTATGGTAACTCTTGCTT GACTATGGGAATGGTGGTGCAGGATAAGTGGAAGACATTGGTGCACACAGCAAGAATCTCCCCTCAGCAAAGGAGAGGAG AACCTGTTCCTCAGGAGCTTCTGGACAGGGTCTTAGCTGCCCATGCCTACTGGTCTCAGCAACAATGTAAGCACCAACTT AAACCTCTGTGACTGAACCATCACGATATTGAACAACACAGAAGAACAAATTCAATGCTGCAAAAGTAGACTTTTCAGGT TGATGTAGTTTAGTTATGCAAAATGTTAATAGTACATAATATGCTCAATTACATATATTATCCATAATGTCTCTTGCCAT CCATCGCTTTAATTTGCATTGTAATGGTTGGGTGATTTGTACATGATTGTTTAACTGAAAGGGAATAATACGGTATCACA CTTACCATTCCATGTGGACAATTGTTGGTATGCTGTCAAAAGCATACTAGAAT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0579900.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGTTGCAGAAGAGGTTGAACTACGGTTTTGATGGCTATCGGGCACCTTCCATTCCTAGGGCTTCAAGATCTGCTAG GGGGAGGGGTACAATCAGGAAGAAGCCTGACAGCAGTCAGATACAGGCATTTGAAATTTTGGCTAGTGTAGCTGGAAACT TTTTGCAGCAGAATGAGAGTTCCATTCCTGATAATGCTGCTGATTATGCAAAAGATCCTCACTCTTTTGCTGGTACTAAC ATAAAGGACAAACAAGAGCATGAAGCAGGTTTATTTAATGGGGATCTATTTGAGCATGGGAATTGCAGTGGAATTTCCTC TGCATGTATCCCTAGTTTACAAGGGAAACATGATAACCAAAGACTCTTGGATGATTCATCTATTCTTGGCAATGATCTTG AAGGCCAAGGACAGAATGTCCTTGAGAGGGAAGATGAACGGGTAAAAGGGAGAAAAACAAACGAGAAAATCATCCGCATC AAGGGAAGTTCTAAGGGATTAACAGAACCGAGCCATAGAGCATCAAAAGATTGTAGTTCAGAAAATTTTGTGGGAAAGCC TTCATTGGAGAATCTTGATTCTTTACCCAATGGTTCCACTTCTAGGAAATTAGTTACTAGAGATGATGACGAAAACTTTG TTACGTGCACTAAACTCAGCTCCAGGAATAACATATCTGGCCCACTACCAGATGTGTTAAAATTCAAGGATGCAAGTCCT TTTACAAATGATGAGAACAATAGTAGGGACAATTCTGTATTTGAAATTTCACAAAGAATGTATCCATTTAAGAAGAGGAA GTTCTTCCATCTGGCCTCATCAGCTGCATCTGATAGAGGCTCACACTGTCAAGGCATATTTGATTCTTCTGACACCCGGG TTAATGGCATAAACGAATGCACAGCAATTGAAGAATCATCCTCAGAAGCTGGTCAACAAGGACATCATGGGTCCAGGGGT TGTAACGTGAAGCTTAGCATAAAATCCTTTAAAGTCCCTGAGCTTTTCATTGATATACCTGAAACCGCAACTATCGGTTC ACTGAAGAGGACAGTGATGGAGGCTGTGACAACTATACTTGGAGATGAACTACATGTGGGAATCCTTCTTCAGGGAAAGA AGGTCAGAGATGACAGCAAAACTCTAATCCAGACTGGGATATCTCAAGACGACAAACGTCATAGGTTGGGGTTTATGTTG GAGCCGAGACATCCTCGAATTTCTCCTTCTTCATACAATGAAGACCCTTGTCTTCTTAACCCCGGTTCACAACAGAAACT ATCCAAGCAATCAACATCTTTAATGTTACAACAAGGACCATATAATGTATCCCAAGAACGTTCGCTGATCAAAATTGAAA ATTGTGCTGAAGGTGATCTTAATATGGTCTCCTCTCTAGCAGATACTTCAGCTAACAATAACATGTCAAAGTGTCGCGCT CTGGTAGCAGTTCCTGCCATTAACATGAATGCGTTAGCTGTGGTTCCATTCCGCCGCAAATCTGGGAATCCTGACTATGC ACAGCGCCGAATCAGGCGGCCGTTCTCTGTTTTAGAAGTCGAAGCATTGGTTCAAGCCGTTGAGAAACTTGGAACTGGAA GGTGGCGTGATGTCAAACAACGTGCGTTTGACAATGCAAAGCATCGAACTTATGTGGATTTAAAGGATAAGTGGAAGACA TTGGTGCACACAGCAAGAATCTCCCCTCAGCAAAGGAGAGGAGAACCTGTTCCTCAGGAGCTTCTGGACAGGGTCTTAGC TGCCCATGCCTACTGGTCTCAGCAACAATGTAAGCACCAACTTAAACCTCTGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0579900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVLQKRLNYGFDGYRAPSIPRASRSARGRGTIRKKPDSSQIQAFEILASVAGNFLQQNESSIPDNAADYAKDPHSFAGTN IKDKQEHEAGLFNGDLFEHGNCSGISSACIPSLQGKHDNQRLLDDSSILGNDLEGQGQNVLEREDERVKGRKTNEKIIRI KGSSKGLTEPSHRASKDCSSENFVGKPSLENLDSLPNGSTSRKLVTRDDDENFVTCTKLSSRNNISGPLPDVLKFKDASP FTNDENNSRDNSVFEISQRMYPFKKRKFFHLASSAASDRGSHCQGIFDSSDTRVNGINECTAIEESSSEAGQQGHHGSRG CNVKLSIKSFKVPELFIDIPETATIGSLKRTVMEAVTTILGDELHVGILLQGKKVRDDSKTLIQTGISQDDKRHRLGFML EPRHPRISPSSYNEDPCLLNPGSQQKLSKQSTSLMLQQGPYNVSQERSLIKIENCAEGDLNMVSSLADTSANNNMSKCRA LVAVPAINMNALAVVPFRRKSGNPDYAQRRIRRPFSVLEVEALVQAVEKLGTGRWRDVKQRAFDNAKHRTYVDLKDKWKT LVHTARISPQQRRGEPVPQELLDRVLAAHAYWSQQQCKHQLKPL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21717
1 604 604 0.0 –
PANTHER
PTHR21717:SF56
1 604 604 0.0 –
MobiDBLite
mobidb-lite
163 182 20 - –
SUPERFAMILY
SSF54236
318 405 88 3.14E-6
IPR029071
Gene3D
G3DSA:1.10.246.220
501 603 103 6.1E-44 –
ProSiteProfiles
PS51294
507 566 60 14.674
IPR017930
SMART
SM00717
511 564 54 1.4E-7
IPR001005
CDD
cd11660
513 563 51 1.92552E-17 –
SUPERFAMILY
SSF46689
513 594 82 1.28E-15
IPR009057

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0579900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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