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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0583900 |
| Transcript ID | LotjaGi1g1v0583900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT4G13710.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q944R1|PLY15_ARATH Probable pectate lyase 15; TrEMBL-Plants: tr|G7L2D3|G7L2D3_MEDTR Pectate lyase; Found in the gene: LotjaGi1g1v0583900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112338867..112345597) extracted from Lotus japonicus Gifu genome v1.2.
CGGTGGTGAGTTAGTCGGTTAAACTGATTTGGCTGATTAACTTAACCATGGTTAAGCTTTTTCTCAACTGATATTCGCGC GCGTCTCTCTATATAAACCCCTCTCTCCCTCCCATTTCTTTCTAGCTTCATTCATTCATTCATTCTCTCCCTTTCTTCAC AACACCAAAACAGAGTGACCACAACCACCAATCAATCAACAATGGAGGTGCAGTTCAATCTCTGCTTCCTCCTCATTACG CTTCTTCTGGCTACCACCAAAGCCAACCAATCAAGGTACAAAACCTAGCTGTGAATTTCAATTTTGATCTTATTTATTTT TCCGATGATTAGAATGTGAATTTTCTTTGCTTGCGGCAGGGTTGTGGAGAGAGAAGAGACATTGCAGATTCAGAGCTTGA AGAATTCGTCAATGGCGGAAAGGTTTGTGTTAGTTCAATTTTACTGTTACTACTTACTAGTACTACTACTGTGATAACTG GTTGAAATCAAACCGTCCACGTTGAGCAAAGTCATAGATGACCGTTGGATTAGGATGAATTGAGCTTGATTCTTTCAGAT CCGATCTCAGAGGTCTGGGCCGTTAATTCTGTTAATTGATCTTTTTCTTTGTCTACAAATTTTCAGGTCTTTCAACGAGC ATGCAGTTGAAAATCCAGAGGAGATTGCTTCCATGGTTGAAACGTAAAATCTCTCACTCTCTAAAACTCATAATTACTTT TCTTTTACAACGGAAATATAAATTGCACCCTTCAGGAATTGAACCTGAACCTCCCTCATCAAACTCATGTGTCCACTAGT TTTTTCCACTTGAGCTATTATTCGGGACAATACTGAGAATTACTTTATATATTGAGTGATTATTTTTGCATTTGTTTTAT TGTATTATTGGTTCCTATCTCATTTCATAGGTCATGTGCTTGGTAGATTAGTATATTGATTTTTTTTCTCTAATTATCTT GGGGTTAGAGAAGAGGATTCACATGATTATGAACACTATTGATATCTGGATCAGCAGATTCAGCACACACGATAGAGTGA TAGACACACTTGGCTTTAGTTAATTAGCATTAATTTAGTGATAATTAATGATTGAGATGCAGGACAAAAGGAGGAGGGTA CCCTGATAGCTTCTCGTGAATCCTTCTTTTGGATTCAAATTAGATGCCTATTTCCATTCTTTTTTGGTTGAAATTTTGCG TGATGAACAATCAGTCAAGTCAAAGTGGTTAATTTGAGTGCCAATTGAATGACATTAACCTATGATGCTGTTTCAAATTT GTTTTCTTCTTTACCCAGTTCCTTTGAGTAAGAAACTATACCAACGACCTTCCATTTTTGAGCTTAGTCCCAAAATTTAT GCCTTGTTTGTACAAGGGTAAATACCACCCCCAAATTCACATCAATAGGAATTAGGGAATTTTCATCTGAACAAATTTCA CCTATGAAAACATTAGTATCCTACAATGAGGTTATAGCCCATTAGTAAAATAGTACTATTTTGACTCTTAATAATGATCA CATTAGTATCTGAACTATTCTTCAAGAAGAAGATAAGTCTTAAGCCCCGAATAGTACACTTTTACATCTGAAGAGGTTAC TTTTTATATTACCAGTATGAGAAAAATAACAGTATTTGAGATTCCCATGTGATGGCCCTGTATTCTTTGATGCCTTTGCT CACGGCATCATAAATCTCCAAAATTCTCTGCTTTTATTATAAAAAACAAATAGTATAATCTTGCTTTAATTAATTCATCA CGTTCTGAAGTTCCCTTTCATGGTTCAAAAGATTCAACCACCATGTTCTTTGCAGATGCATGAGAGCTCCTAAAAAAAAT TGAAGCCATTATATTTTTATTTGCCAGCTTAACCACATGCCAATGTCTCGAGATCCGACCATTTCGGTCATAATAAATTT CTTGTCTTTTTTATTTTCCTTATCCGAAAATAAATTACTTTTCAAGTACAAACACCTTTCTGCACCTAAATCCAAGGTTC ATGACTTCAATCAAGTCATTTTGTTTTACATATGCCTGTGGTATTTTAGTGGCCCTCTTATAATTGCTACCATATATATA TATACTTACATTAATTCATGTGTAAGTTACTTTCTCTAGGCCTGCTATGGTTTACATAAACTCTTTAATCATGTCCCACC CCTTTTTACAATTGAATTGTAAATTTTAAGAGAGCTACTACTTAATAATCCATATCTCAGTGTAAATTTAGCTTGCAATA GTACATTGAATCAGGGTAAGTTCATTGTTGGTTTCCTTCTTACAGAACTTTAATGCTTGATGATGACCATAAAAAATCAG TGAATCAGGATATTCACTCTTCAATTTGGTCCTACTTTGAGTTACAATGTTACATATCAGTAGATATCAAAACTATTTTC TGTGTTACTGATTGCTTCAATGGCTCTGGCCCTTGATCTTATTACCAATATAATTACATAGAATTTTAGAAGCAAATACA ATGTTGAACTGGGTGTTAGGAATTGATGAAGTTCCATGTTCCTTATCTTCCAATAAGGTGGGGTAAGGCACATGAATGGG CTAACATATCCAGCATGTGTACAAGCACAAGCTCCAAACTAAGCAACAGATCTGGTTTAACCACATCACTATATTTTGGC TGATCTAGCAGCTGTTTTCTGACACATTTTTGCTATTTGATGAGAAACTCCATGAACATATTAAATGATGACTAGGATTC AGAAACTCAATAATACTACTAACGCTTTCACCACCGACACACCCCACAGTAGCAGAAACTAGATCTCCCTTTCTACCTTG ACATTTATTTCTAAGTAGAGAAAGGAGGTGAGATTGCCAACCCTCGATTTTCCGTATACACCGTATCATTCTATCCGTAT TCATAACAGGAGAAGCACATGACCGACCCACCAGTTTCAGCAATTTAGGGACATCCTCAATAAATGCTTGCATGTTAAGA TCTTAATTATTAATTGCGTTCAGTTTTTTAATTTAATTTTGTTCTTTATGTCATTAGTATTTAATTTTGGTCAATGCTTG CCATTATTTTCAAGACACTTCTTAATGTTTTAAAAGGGTTTTCCAAATCACCCAACAAGCTGTTTTAATATTGGATTGGA ACAATGAGATTATTTTTTTTGAACTCAATAAGATTATTTATAAAACAGAATACATAAAGAGTTATCAAATTCATTACCCA CTTATATTAATTTCTACTCTCTTGAGTAATTTTGACAACCATTTTTAAAATAGTAGAATGAATTTTCAATGCTTAGACCC TGTTAATTATACTAATTACGACTAAGATAATTTTTCTACCTTAAAAAAAAAAGATAAATTTTCTCAATACTAAGCTTGGG TAATTCTTACAATTCCTCTTTATATATAACTTCACCAATGTTAATTATTACTTCTTCATCCGAGACAATTAATTTTTTCT TACCAAAGTTAATATTTAATAGTTATCAAATTTTATCCAAATTTTTATTTTTTATTCTCATATTAATTATTGATTTATTT TAGTTTTTTTTTATATCGCAAAGTTAAATTACTTCATCCTCCATGAATTGATCATTGGACCCTCCACCAACTCATATATG TCTCATAACTCATACCACTCGAGCTATAATTCGTGAAAAAAAAACATTTATTTTATTTTACTTTTTATCTCAATCTTCTT AATAAAATTGTAAAGAATATTATTGGAACAATAATTATTTAAGTAAAAAAACAATTAATACAAAATAAAACTACTAAAAT GTCAAATATAATTGTAAGTTGTAACAATGATTCTCAAAAATTGATCTTGTCTGTATGAAGCAGAGTTAATTTAATTTGAA ATTTGAAACAGAAGCATACGCAATCACACGCAAAGAAGGAACCTAAATTTCTTCTCATGCGGGACCGGGAACCCAATCGA CGACTGCTGGCGCTGCGACAAGCGGTGGTACCTCCGCCGAAAGCGACTAGCCAACTGCGCCATCGGATTCGGCCGCAACT CCATCGGCGGCCGCGACGGAAGGTACTACGTCGTAACAAACCCCAACGACGACGACGCCGTCAACCCTAGACCCGGCACC CTCCGTTACGCCGTCATTCAAGACAAACCCTTATGGATCGTGTTCAAGAGAGACATGGTGATCACTCTCAAGCAAGAACT CATCATGAACAGCTTCAAGACCATCGATGGTCGCGGTGCCAATGTTCACATCGCGTTTGGAGCTTGCATCACGATCCAGT TTGTCACGAATGTGATCATCCATGGTGTTCATATCCATGATTGTAAGCCGACTGGGAATGCCATGGTTCGAAGCTCTCCG TCGCATTATGGATGGAGGACAATGGCTGATGGTGATGGGATTTCGATCTTTGGGTCGAGTCATATTTGGATTGACCACAA TTCGCTTTCTAATTGTGCTGATGGACTCGTTGATGCTATTATGGGGTCTACTGCGATTACCATTTCTAACAACTTCTTCA CTCGCCACAATGAGGTAAACCTTCTTCTCGATTTGCTTCTTCCCGATTTGATATGACCATAAGCGCTTAATTAAGCTGTT TTTCCAAATGTGACCTTAAGTAATACCAATTTTGATTTAAGTGTTGATTTTAATTGACTTCATAATTGTACAGGTGATAC TGCTGGGTCACAGTGATACTTATGTGCGTGATAAGCAGATGCAAGTAACCATTGCATTCAACCATTTTGGGGAGGGTCTT ATTCAAAGAATGCCAAGGTAAAACATCTTTAAAGCAACCAATGATTTTGATTTTCTTAGTCGGGTATAGGGGTGACAATA TGGGTTGGCGGGGCAAGCCGGACAAAACCCGTCATTGGCCCGCCAAAATGCAGGTAGGTTGGGTTGGGCTAGCCCACTTT TAGTATTTGGGTTCAGAGTCTTAGCCCAACCCATATTTTGACGGACCAGCGGGTTGGAGGGATAGCCCACTTAGAGAATG TAGTGAAATGAAAAAGGTTGTGTAATGACTCAGATATCAGTTTTATTGATTTTGGGGTCAAAACCTGGGTACTTATTTGA TCTGACACTTTTTGTTTTCTTAGTCAGATATGTCTCATATGAATGAGCCTGTTTTTGTCCCTATATAGCTGAGCCTTGTT TTCGGCCGACATAAGCTGAACCTTTAACATTTAAGCTTTGAGCTGAGCCTTGTTTTCTCTTGGGCTATGAATAACCCATT TAATAATTGGCAATGGGATATAAGAGATCAATAAAATGGAAGAAAATGAAAAAGTGGAGATCTCTTTAAAGCCCATATCT TTTTTGGAGCATATACCTGAGCCTCTTTTATTTGGACAAACATAGATGAGCCTTTAATCTTCTTGTTAGATGTTTTTTCT TGGGCTCTAAATAGTCCATTTATAATTTGCAATTGGGATATAAGAGATCAATTAAGTGGAAGAAAATGATAAGTAGAGAC CTCTTTAAGTGTCTTTGTCAAAACAAAATGCCCATTACTTCAGGATTCAGGAGTGACCTCTGTTGTGCACTTGTGCTAAA TGATATTATGGCTTTATATTCTCCATGTTGTTTTAACACAAAGATTGATTATTGATAATGCAGGTGTAGACATGGTTATT TCCACGTGGTAAACAATGACTATACCCACTGGGAAATGTATGCGATTGGAGGCAGTGCTAATCCAACAATTAACAGCCAA GGCAACAGATACCTTGCCCCTGTGAACCCTTTTGCTAAGGAGGTAACATTTTTACTAGTTTTCCGCATGTTGCTTATGAA TATGATGGTGAACTTTTTGTTTAAAAATGGAAAACTCCATGTGGACAGGTGACAAAGAGAGTGGATACAGGGGCAGGTGT ATGGAGAGGTTGGAATTGGAGGTCACAGGGAGACCTTCTGCTGAATGGAGCCTTTTTCACTCCTTCAGGTGCAGGGGCTG CTGCAAGCTATGCTAGAGCTTCAAGTTTGTCTGCAAAATCATCTTCTTTAGTTGGTACCCTTACCTCTGGCTCTGGTGTT CTTAACTGCCGCAGGGGTGCCATGTGTTAATACCAACAACAAGCACTATCTACAACCAAAGGAGTAAATGGAGAACATCC AAATTCCAAAGCAAATTAAAATTAAAGAAAGTAATTCTAAAAAATTACAAGAGAGAGAGAGAAAGAAAATGAAAAAGCAA AGGAAGAAAGAAAAGTTTTAATTCTTTTTCCTCTTATTATTTCCTTTGTTATAGATGTATTGAGTGAGTTTGCACTATTG TATTAACTTTGGACACACCCATTGTTTGTCTTGTCTGTCACTGGTTAGATATTGGGGGAAAGAAAACTGTACATTTTATG TGAACTGTTATCAAATTGATAACAATGATTCCTCTAGAAGTCCGTCTCCCTTCAATTTTCCAAGGGAAACAAAACGAATT TTACTCTCTTCCCCAGTAGTGCTGTATGGTCTTCTTGACCATTTCTACTAATACACCTCGAGTATGTTTGCGTGCCCTTC ATTTACAGAACATTTGATTTGCCCGAAATGATATGGGCATTGATATGGGCATGCAAGGGATAACATGGAATGTATTGTTG AAATAGTTGGTGTTCAAATCAGAATTTTATTTTCTTATACTTATGCCTTCTTGTGTATTCCTTTTCATGAAATAATTTTG TCTTCACTTTCTTTCTTATATATATTTAAAAGAAATCATTTCAATAAATGACATGAATTGCATTTGTTTGAATAAACTAT GTTGATTCTCC
CDS sequence (LotjaGi1g1v0583900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTGCAGTTCAATCTCTGCTTCCTCCTCATTACGCTTCTTCTGGCTACCACCAAAGCCAACCAATCAAGGGTTGT GGAGAGAGAAGAGACATTGCAGATTCAGAGCTTGAAGAATTCGTCAATGGCGGAAAGGTCTTTCAACGAGCATGCAGTTG AAAATCCAGAGGAGATTGCTTCCATGGTTGAAACAAGCATACGCAATCACACGCAAAGAAGGAACCTAAATTTCTTCTCA TGCGGGACCGGGAACCCAATCGACGACTGCTGGCGCTGCGACAAGCGGTGGTACCTCCGCCGAAAGCGACTAGCCAACTG CGCCATCGGATTCGGCCGCAACTCCATCGGCGGCCGCGACGGAAGGTACTACGTCGTAACAAACCCCAACGACGACGACG CCGTCAACCCTAGACCCGGCACCCTCCGTTACGCCGTCATTCAAGACAAACCCTTATGGATCGTGTTCAAGAGAGACATG GTGATCACTCTCAAGCAAGAACTCATCATGAACAGCTTCAAGACCATCGATGGTCGCGGTGCCAATGTTCACATCGCGTT TGGAGCTTGCATCACGATCCAGTTTGTCACGAATGTGATCATCCATGGTGTTCATATCCATGATTGTAAGCCGACTGGGA ATGCCATGGTTCGAAGCTCTCCGTCGCATTATGGATGGAGGACAATGGCTGATGGTGATGGGATTTCGATCTTTGGGTCG AGTCATATTTGGATTGACCACAATTCGCTTTCTAATTGTGCTGATGGACTCGTTGATGCTATTATGGGGTCTACTGCGAT TACCATTTCTAACAACTTCTTCACTCGCCACAATGAGGTGATACTGCTGGGTCACAGTGATACTTATGTGCGTGATAAGC AGATGCAAGTAACCATTGCATTCAACCATTTTGGGGAGGGTCTTATTCAAAGAATGCCAAGGTGTAGACATGGTTATTTC CACGTGGTAAACAATGACTATACCCACTGGGAAATGTATGCGATTGGAGGCAGTGCTAATCCAACAATTAACAGCCAAGG CAACAGATACCTTGCCCCTGTGAACCCTTTTGCTAAGGAGGTGACAAAGAGAGTGGATACAGGGGCAGGTGTATGGAGAG GTTGGAATTGGAGGTCACAGGGAGACCTTCTGCTGAATGGAGCCTTTTTCACTCCTTCAGGTGCAGGGGCTGCTGCAAGC TATGCTAGAGCTTCAAGTTTGTCTGCAAAATCATCTTCTTTAGTTGGTACCCTTACCTCTGGCTCTGGTGTTCTTAACTG CCGCAGGGGTGCCATGTGTTAA
Protein sequence (LotjaGi1g1v0583900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVQFNLCFLLITLLLATTKANQSRVVEREETLQIQSLKNSSMAERSFNEHAVENPEEIASMVETSIRNHTQRRNLNFFS CGTGNPIDDCWRCDKRWYLRRKRLANCAIGFGRNSIGGRDGRYYVVTNPNDDDAVNPRPGTLRYAVIQDKPLWIVFKRDM VITLKQELIMNSFKTIDGRGANVHIAFGACITIQFVTNVIIHGVHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGS SHIWIDHNSLSNCADGLVDAIMGSTAITISNNFFTRHNEVILLGHSDTYVRDKQMQVTIAFNHFGEGLIQRMPRCRHGYF HVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPVNPFAKEVTKRVDTGAGVWRGWNWRSQGDLLLNGAFFTPSGAGAAAS YARASSLSAKSSSLVGTLTSGSGVLNCRRGAMC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| PANTHER | 8 | 433 | 426 | 6.0E-261 | – | |
| PANTHER | 8 | 433 | 426 | 6.0E-261 | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 433 | 410 | - | – | |
| SUPERFAMILY | 62 | 427 | 366 | 6.29E-100 | ||
| Gene3D | 84 | 426 | 343 | 1.9E-120 | ||
| PRINTS | 107 | 124 | 18 | 7.9E-85 | ||
| PRINTS | 131 | 156 | 26 | 7.9E-85 | ||
| SMART | 159 | 356 | 198 | 1.4E-101 | ||
| Pfam | 167 | 348 | 182 | 8.2E-20 | ||
| PRINTS | 167 | 183 | 17 | 7.9E-85 | ||
| PRINTS | 231 | 252 | 22 | 7.9E-85 | ||
| PRINTS | 311 | 330 | 20 | 7.9E-85 | ||
| PRINTS | 333 | 352 | 20 | 7.9E-85 | ||
| PRINTS | 375 | 399 | 25 | 7.9E-85 | ||
| PRINTS | 404 | 427 | 24 | 7.9E-85 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0583900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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