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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0593100 |
| Transcript ID | LotjaGi1g1v0593100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G74600.1 pentatricopeptide (PPR) repeat-containing protein; Swiss-Prot: sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protein At1g74600, chloroplastic; TrEMBL-Plants: tr|V7B8B3|V7B8B3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0593100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:113326397..113329575) extracted from Lotus japonicus Gifu genome v1.2.
AGAAGAGTTGATTAAAAAAAACATGAAGAAGAGTCTGTTGTAGTATTGTATATGGCTGTGAAGTTGTGTGCCCTTCGTTT GGTCCTTCTGAATTCTCTAATCAATGAAAAGTTTCACAGGAAAAGTTCACAACTTGCTTGCAGATTCACCTCTTCCCTCG CTTTTGTTCAAAAGCCATTCGTTTCACTTTCATGCACTAAACATGAACAAGAGACCACCACTTTTGAGTTATTGCGTCAT TACGAGTTCTTCAGGAAGCACACTGCTAAGAACACAAAAATCTTGCATGCCCATTTGCTTAAATCTCATGATTTACAATC TGACATCTTCTTAATGAACTCTTTGCTCGATTCTTACTGTAAATCTGCTGACATGGTTGTTGCCCACAAGCTGTTTGATA CAATTGCTCTTCCAAATATTGTTTCTTGGAATGTCATGATATCTGGTTATGACCATAATTCGATGTATGAGAAGTCAGTG AAGATGTTTTGTAGGATGCATTTGTTTGGTGTTGAGCCTGATGAGTTTAGTTATGCGAGTGTTCTCTCGGCCTGCATTGC CTTGCAAGTTCCAATATTTGGCAAGCAAGTTTATTCACTTGTCATGAAAAATGGTTTCCTTTCCAGTGGCTATGTTCAGA CTCGAATGATGACTATGTTTTCCAAAAATTGTAACTTTAAGGAGGCTCTAAGATTTTTTAATGATGCTTCAGCTTCATGG GCTAATGTGGCATGTTGGAATGCTATTATTTCTTTGGCAGTTAAGAATGGAGATGGCTGGGTTGCAATGGATCTGTTTAA TCAAATGTGCCATGCATCGTTATTGCCAAATAGTTACACATTTCCAAGCATCTTAACAGCATGTTGCGGGCTTAAAGAGG TGTTGATTGGAAAAGGAGTTCATGGATGGGTGATCAAATGTGGTGCAACAGATGTATTTGTGCAGACTGCTATCATTGAT CTATATGTGAAATTCGGATGTATGAGGGAGGCTTATAGACAATTCTCTCAGATGAAAGTCCATAATGTTGTCTCCTGGAC TGCTTTAATTTCTGGGTTTGTGCAAGATAATGATATTACTTTTGCACTACAGCTTTTCAAAGATATGAGAGTAATAGGGC AGGAGATAAATAGCTACACTGTTACTAGTGTACTTTCTGCTTGTGCTAAATCCGGGATGATTGTGGAGGCGGGCCAAATT CATTCCTTGGTATTAAAATTAGGGTTGAATTTGGATGTTAATGTTGGGGCTGCCTTAGTTAACATGTATGCAAAAATAAG AGAAGTTGGACTGTCTGAGTTAGCCTTCGGCGAGATGAAAAATATGAAGGATCAGAGCATATGGGCAGCCATGCTTTCTT CTTTTGCTCAGAACCAAAATCCAGGAAGGGCACTTGAGTTATTCCCTGTAATGTTAGGAGAAGGAGTGAAACCTGATGAA TATTGTATAAGCAGTGTGTTAAGTATTACGAGCTGCTTAAATCTTGGGTCACAGATGCATACTTACGTTTTGAAGTCTGG GTTAGTAACTGCGGTTTCTGTTGGCTGTTCACTTTTTACTATGTACTCAAAGTGTGGTTGTTTAGAGGAATCTTATAAAG TTTTTCAACAAGTTCTTGTCAAAGACAATGTGTCATGGGCCTCCATGATTTCTGGTTTTGCTGAGCATGGATGTCCGGAT CGAGCTCTTCAGCTATTCAAGGAAATGCTATCTGAAGAAATTGTACCTGATGAAATTACCTTAAACTCAACTCTAACTGC GATTTCTGATCTCCGCTTTTTGCATACAGGTAAAGAAATTCATGGCTACGCTTTTCGTTTAGGATTAGGAACAAACACAG TTGTTGGTGGGGCAGTTGTCAACATGTATTCTAAGTGTGGAAGCTTGAATTTGGCAAGGGCGGTGTTTGATATGCTGCCT CAAAAAGATGTTTTTGCTTGCTCTTCCTTGGTCTCAGGATATAGCCAAAAGGGTTTGATTAAAGAGTCATTATTGTTGTT CCGTGATATGCTTCTGACTGATGTAACAGTTGATGCTTTCACAATTTCATCCATTCTTGGGGCTGCTGCGCTTTTGTACC GGTCAGATATTGGAACTCAACTGCATGCCTATGTTGAAAAATTGGGCTTACAAACAAATGTTTCTGTTGGTAGTTCACTA GGGACAATGTACTCAAAATGTGGAAGCATTGAGGATTGCCGAAAAGCATTCGATGATGCTGAGAAGACTGACCTGATAGG TTGGACATCCATCATAGTGAGCTATGCTCAACATGGTAAAGGTGCAGAGGCCTTAGCTGCTTATGAACTTATGAGAAAAG AAGGAGTCCAGCCTGATGCGGTAACATTTGTTGGGATTCTAGTGGCTTGTAGCCATAGTGGTCTTGTTGAAGAAGCCTTC TTCCATCTTAATTCAATGGTCGAAGACTACAACATTAAGCCGGGTCATCGTCATTATGCTTGTATTGTTGATCTTCTTGG TCGATCAGGTAGACTGAGAGAGGCTGAAAGTTTAATCAACAATATGCCTCTTGAACCTGATGCTTTAATATGGGGAATTT TGCTTAATGCTTGCAAGGTCCATGGTGATTTTGAGCTCGGAAAGTTAGCAGCCGAAAAGGTAATGGAATTGGGGCCAAGT GATGCCGGTGCTTATGTTTCCTTTTCAAATATCTGTGCAGAGGGAGGACAGTGGGAAGAAGTCACCAAGATTAGAAGCTC CTTTAATAGAACTGGCATCAAGAAAGAGGCTGGTTGGAGCCTTGCGTGAAAAGCATAATATCATGATAGCTGCTAATTTC TTCTCTTGCGGATTCCGTTACATTAACATATTGAAAAAGAATAGTGAGTTCACATTTGAAAGCTAGATTCTCATGGAAGC AGATAACCAGCATTTTGGATGATGTTAGATGCACAGTAGTCATCTTAAGAAATGTCAGGATATGGATATATAGCCGTAAC GTTTATTACATTGTAACTTGTAAGTATTTGCACAATCCAGCAACATAAATATGTAATGAATCATGATTTTTGCATTTGCT TCCTATTTCCTAACCAATTTCAACGTTTGGCTGTCCTTAGCCTAGAGGCCTAAAATTGTAAATTTCATGAGAAATGTTAT TTGAAACAAGAAAATCAGATACAAAATGAGGAAATTGCTGTGTTAATGGTGTAATATTG
CDS sequence (LotjaGi1g1v0593100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTGAAGTTGTGTGCCCTTCGTTTGGTCCTTCTGAATTCTCTAATCAATGAAAAGTTTCACAGGAAAAGTTCACA ACTTGCTTGCAGATTCACCTCTTCCCTCGCTTTTGTTCAAAAGCCATTCGTTTCACTTTCATGCACTAAACATGAACAAG AGACCACCACTTTTGAGTTATTGCGTCATTACGAGTTCTTCAGGAAGCACACTGCTAAGAACACAAAAATCTTGCATGCC CATTTGCTTAAATCTCATGATTTACAATCTGACATCTTCTTAATGAACTCTTTGCTCGATTCTTACTGTAAATCTGCTGA CATGGTTGTTGCCCACAAGCTGTTTGATACAATTGCTCTTCCAAATATTGTTTCTTGGAATGTCATGATATCTGGTTATG ACCATAATTCGATGTATGAGAAGTCAGTGAAGATGTTTTGTAGGATGCATTTGTTTGGTGTTGAGCCTGATGAGTTTAGT TATGCGAGTGTTCTCTCGGCCTGCATTGCCTTGCAAGTTCCAATATTTGGCAAGCAAGTTTATTCACTTGTCATGAAAAA TGGTTTCCTTTCCAGTGGCTATGTTCAGACTCGAATGATGACTATGTTTTCCAAAAATTGTAACTTTAAGGAGGCTCTAA GATTTTTTAATGATGCTTCAGCTTCATGGGCTAATGTGGCATGTTGGAATGCTATTATTTCTTTGGCAGTTAAGAATGGA GATGGCTGGGTTGCAATGGATCTGTTTAATCAAATGTGCCATGCATCGTTATTGCCAAATAGTTACACATTTCCAAGCAT CTTAACAGCATGTTGCGGGCTTAAAGAGGTGTTGATTGGAAAAGGAGTTCATGGATGGGTGATCAAATGTGGTGCAACAG ATGTATTTGTGCAGACTGCTATCATTGATCTATATGTGAAATTCGGATGTATGAGGGAGGCTTATAGACAATTCTCTCAG ATGAAAGTCCATAATGTTGTCTCCTGGACTGCTTTAATTTCTGGGTTTGTGCAAGATAATGATATTACTTTTGCACTACA GCTTTTCAAAGATATGAGAGTAATAGGGCAGGAGATAAATAGCTACACTGTTACTAGTGTACTTTCTGCTTGTGCTAAAT CCGGGATGATTGTGGAGGCGGGCCAAATTCATTCCTTGGTATTAAAATTAGGGTTGAATTTGGATGTTAATGTTGGGGCT GCCTTAGTTAACATGTATGCAAAAATAAGAGAAGTTGGACTGTCTGAGTTAGCCTTCGGCGAGATGAAAAATATGAAGGA TCAGAGCATATGGGCAGCCATGCTTTCTTCTTTTGCTCAGAACCAAAATCCAGGAAGGGCACTTGAGTTATTCCCTGTAA TGTTAGGAGAAGGAGTGAAACCTGATGAATATTGTATAAGCAGTGTGTTAAGTATTACGAGCTGCTTAAATCTTGGGTCA CAGATGCATACTTACGTTTTGAAGTCTGGGTTAGTAACTGCGGTTTCTGTTGGCTGTTCACTTTTTACTATGTACTCAAA GTGTGGTTGTTTAGAGGAATCTTATAAAGTTTTTCAACAAGTTCTTGTCAAAGACAATGTGTCATGGGCCTCCATGATTT CTGGTTTTGCTGAGCATGGATGTCCGGATCGAGCTCTTCAGCTATTCAAGGAAATGCTATCTGAAGAAATTGTACCTGAT GAAATTACCTTAAACTCAACTCTAACTGCGATTTCTGATCTCCGCTTTTTGCATACAGGTAAAGAAATTCATGGCTACGC TTTTCGTTTAGGATTAGGAACAAACACAGTTGTTGGTGGGGCAGTTGTCAACATGTATTCTAAGTGTGGAAGCTTGAATT TGGCAAGGGCGGTGTTTGATATGCTGCCTCAAAAAGATGTTTTTGCTTGCTCTTCCTTGGTCTCAGGATATAGCCAAAAG GGTTTGATTAAAGAGTCATTATTGTTGTTCCGTGATATGCTTCTGACTGATGTAACAGTTGATGCTTTCACAATTTCATC CATTCTTGGGGCTGCTGCGCTTTTGTACCGGTCAGATATTGGAACTCAACTGCATGCCTATGTTGAAAAATTGGGCTTAC AAACAAATGTTTCTGTTGGTAGTTCACTAGGGACAATGTACTCAAAATGTGGAAGCATTGAGGATTGCCGAAAAGCATTC GATGATGCTGAGAAGACTGACCTGATAGGTTGGACATCCATCATAGTGAGCTATGCTCAACATGGTAAAGGTGCAGAGGC CTTAGCTGCTTATGAACTTATGAGAAAAGAAGGAGTCCAGCCTGATGCGGTAACATTTGTTGGGATTCTAGTGGCTTGTA GCCATAGTGGTCTTGTTGAAGAAGCCTTCTTCCATCTTAATTCAATGGTCGAAGACTACAACATTAAGCCGGGTCATCGT CATTATGCTTGTATTGTTGATCTTCTTGGTCGATCAGGTAGACTGAGAGAGGCTGAAAGTTTAATCAACAATATGCCTCT TGAACCTGATGCTTTAATATGGGGAATTTTGCTTAATGCTTGCAAGGTCCATGGTGATTTTGAGCTCGGAAAGTTAGCAG CCGAAAAGGTAATGGAATTGGGGCCAAGTGATGCCGGTGCTTATGTTTCCTTTTCAAATATCTGTGCAGAGGGAGGACAG TGGGAAGAAGTCACCAAGATTAGAAGCTCCTTTAATAGAACTGGCATCAAGAAAGAGGCTGGTTGGAGCCTTGCGTGA
Protein sequence (LotjaGi1g1v0593100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVKLCALRLVLLNSLINEKFHRKSSQLACRFTSSLAFVQKPFVSLSCTKHEQETTTFELLRHYEFFRKHTAKNTKILHA HLLKSHDLQSDIFLMNSLLDSYCKSADMVVAHKLFDTIALPNIVSWNVMISGYDHNSMYEKSVKMFCRMHLFGVEPDEFS YASVLSACIALQVPIFGKQVYSLVMKNGFLSSGYVQTRMMTMFSKNCNFKEALRFFNDASASWANVACWNAIISLAVKNG DGWVAMDLFNQMCHASLLPNSYTFPSILTACCGLKEVLIGKGVHGWVIKCGATDVFVQTAIIDLYVKFGCMREAYRQFSQ MKVHNVVSWTALISGFVQDNDITFALQLFKDMRVIGQEINSYTVTSVLSACAKSGMIVEAGQIHSLVLKLGLNLDVNVGA ALVNMYAKIREVGLSELAFGEMKNMKDQSIWAAMLSSFAQNQNPGRALELFPVMLGEGVKPDEYCISSVLSITSCLNLGS QMHTYVLKSGLVTAVSVGCSLFTMYSKCGCLEESYKVFQQVLVKDNVSWASMISGFAEHGCPDRALQLFKEMLSEEIVPD EITLNSTLTAISDLRFLHTGKEIHGYAFRLGLGTNTVVGGAVVNMYSKCGSLNLARAVFDMLPQKDVFACSSLVSGYSQK GLIKESLLLFRDMLLTDVTVDAFTISSILGAAALLYRSDIGTQLHAYVEKLGLQTNVSVGSSLGTMYSKCGSIEDCRKAF DDAEKTDLIGWTSIIVSYAQHGKGAEALAAYELMRKEGVQPDAVTFVGILVACSHSGLVEEAFFHLNSMVEDYNIKPGHR HYACIVDLLGRSGRLREAESLINNMPLEPDALIWGILLNACKVHGDFELGKLAAEKVMELGPSDAGAYVSFSNICAEGGQ WEEVTKIRSSFNRTGIKKEAGWSLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 5 | 13 | 9 | - | – | |
| Phobius | 14 | 18 | 5 | - | – | |
| Phobius | 19 | 905 | 887 | - | – | |
| Gene3D | 47 | 173 | 127 | 1.0E-17 | ||
| PANTHER | 74 | 168 | 95 | 2.1E-156 | – | |
| ProSiteProfiles | 91 | 121 | 31 | 6.686 | ||
| Pfam | 95 | 116 | 22 | 0.97 | ||
| Pfam | 121 | 168 | 48 | 2.9E-10 | ||
| ProSiteProfiles | 122 | 156 | 35 | 10.918 | ||
| TIGRFAM | 124 | 158 | 35 | 4.9E-6 | ||
| ProSiteProfiles | 157 | 191 | 35 | 6.226 | ||
| Gene3D | 177 | 279 | 103 | 4.4E-14 | ||
| PANTHER | 187 | 272 | 86 | 2.1E-156 | – | |
| ProSiteProfiles | 192 | 222 | 31 | 5.448 | ||
| ProSiteProfiles | 225 | 259 | 35 | 8.649 | ||
| Pfam | 225 | 272 | 48 | 2.9E-10 | ||
| PANTHER | 279 | 383 | 105 | 2.1E-156 | – | |
| Gene3D | 282 | 382 | 101 | 1.0E-18 | ||
| ProSiteProfiles | 294 | 324 | 31 | 7.191 | ||
| Pfam | 325 | 373 | 49 | 7.7E-11 | ||
| ProSiteProfiles | 325 | 359 | 35 | 9.525 | ||
| TIGRFAM | 327 | 353 | 27 | 3.9E-4 | ||
| ProSiteProfiles | 360 | 394 | 35 | 8.374 | ||
| PANTHER | 382 | 473 | 92 | 2.1E-156 | – | |
| Gene3D | 383 | 476 | 94 | 2.6E-10 | ||
| ProSiteProfiles | 395 | 425 | 31 | 5.185 | ||
| ProSiteProfiles | 427 | 461 | 35 | 10.139 | ||
| Pfam | 430 | 459 | 30 | 0.2 | ||
| PANTHER | 466 | 581 | 116 | 2.1E-156 | – | |
| Gene3D | 477 | 575 | 99 | 1.2E-17 | ||
| ProSiteProfiles | 494 | 524 | 31 | 5.47 | ||
| Pfam | 500 | 521 | 22 | 1.2 | ||
| Pfam | 524 | 570 | 47 | 3.7E-8 | ||
| ProSiteProfiles | 525 | 559 | 35 | 12.386 | ||
| TIGRFAM | 527 | 561 | 35 | 5.7E-9 | ||
| Gene3D | 576 | 705 | 130 | 6.3E-15 | ||
| PANTHER | 578 | 672 | 95 | 2.1E-156 | – | |
| ProSiteProfiles | 595 | 625 | 31 | 6.478 | ||
| ProSiteProfiles | 626 | 660 | 35 | 9.219 | ||
| Pfam | 629 | 654 | 26 | 0.0035 | ||
| PANTHER | 664 | 892 | 229 | 2.1E-156 | – | |
| ProSiteProfiles | 696 | 726 | 31 | 5.218 | ||
| Gene3D | 706 | 903 | 198 | 2.9E-33 | ||
| Pfam | 725 | 773 | 49 | 7.2E-5 | ||
| ProSiteProfiles | 727 | 761 | 35 | 10.764 | ||
| TIGRFAM | 731 | 763 | 33 | 1.5E-5 | ||
| ProSiteProfiles | 762 | 797 | 36 | 7.267 | ||
| ProSiteProfiles | 798 | 828 | 31 | 6.654 | ||
| Pfam | 802 | 825 | 24 | 0.44 | ||
| ProSiteProfiles | 830 | 860 | 31 | 5.108 | ||
| ProSiteProfiles | 864 | 898 | 35 | 6.862 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0593100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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