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LotjaGi1g1v0606800.1

Overview

Field Value
Gene ID LotjaGi1g1v0606800
Transcript ID LotjaGi1g1v0606800.1
Lotus japonicus genome version Gifu v1.2
Description Ribonucleoside-diphosphate reductase; TAIR: AT3G27060.1 Ferritin/ribonucleotide reductase-like family protein; Swiss-Prot: sp|P49730|RIR2_TOBAC Ribonucleoside-diphosphate reductase small chain; TrEMBL-Plants: tr|A0A0L9U8J2|A0A0L9U8J2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0606800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:115169534..115170523) extracted from Lotus japonicus Gifu genome v1.2.

ATGCCTTCAATTCCAGAAGAGCCTCTTCTTGCTCCAAACCCAGATCGATTCTGCATGTTCCCAATCCAATACCCACAGAT TTGGGAAATGTACAAGAAAGCCGAAGCATCGTTCTGGACGGCGGAGGAGGTTGATCTATCGTCCGATCTCCGCCACTGGG ACTCCCTCACCGACGGCGAACGCCACTTCATCACCCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATAGTCCTCGAA AATCTCGCCGGAAGGTTCATGAAGGAAGTCCAATCCGCCGAGGCACGCGCCTTCTACGGCTTCCAGATCGCGATCGAGAA CATCCACTCCGAGATGTACAGCCTCCTGTTAGAAACCTACATCAAGGACTCCGCTGAAAAATCCAACCTCTTCCGCGCCG TGGAAACCATCCCCTGCGTCAAGAAGAAAGCCGAGTGGGCGTTGAAATGGATCGACGCCACCGACTCCTTCGCGGAGCGT CTCGTCGCTTTCGCCTGTGTGGAAGGGATCTTCTTCTCCGGGAGCTTCTGCGCCATTTTCTGGCTGAAGAAACGCGGTCT CATGCCGGGGCTCACGTTTTCCAACGAGCTGATTTCACGTGACGAGGGGCTTCACTGCGATTTCGCGTGCTTGTTGTACT CGCTGCTGAGGACGAAGCTTAGCGAGGAGCGCGTGAAGGGGATTGTGCGTGACGCAGTGGAAATTGAGAGGGAGTTTGTG TGCGACGCGCTGCCGTGTGCGTTGGTGGGGATGAATGGGGATTTGATGAGTCAGTATATTGAGTTTGTTGCGGATCGGTT GTTGGGTGCGCTTGGGTGTGGGAAGGTGTATGGTGTGCAGAATCCGTTTGATTGGATGGAGTTGATTTCGTTGCAGGGGA AGACCAATTTCTTTGAGAAGCGCGTTGGGGAGTATCAGAAGGCTTCTGTGATGTCTAGCTTGAATGGGAATGGTGGGGCT CATGTGTTCAAGATGGATGAGGACTTTTAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0606800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCTTCAATTCCAGAAGAGCCTCTTCTTGCTCCAAACCCAGATCGATTCTGCATGTTCCCAATCCAATACCCACAGAT TTGGGAAATGTACAAGAAAGCCGAAGCATCGTTCTGGACGGCGGAGGAGGTTGATCTATCGTCCGATCTCCGCCACTGGG ACTCCCTCACCGACGGCGAACGCCACTTCATCACCCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATAGTCCTCGAA AATCTCGCCGGAAGGTTCATGAAGGAAGTCCAATCCGCCGAGGCACGCGCCTTCTACGGCTTCCAGATCGCGATCGAGAA CATCCACTCCGAGATGTACAGCCTCCTGTTAGAAACCTACATCAAGGACTCCGCTGAAAAATCCAACCTCTTCCGCGCCG TGGAAACCATCCCCTGCGTCAAGAAGAAAGCCGAGTGGGCGTTGAAATGGATCGACGCCACCGACTCCTTCGCGGAGCGT CTCGTCGCTTTCGCCTGTGTGGAAGGGATCTTCTTCTCCGGGAGCTTCTGCGCCATTTTCTGGCTGAAGAAACGCGGTCT CATGCCGGGGCTCACGTTTTCCAACGAGCTGATTTCACGTGACGAGGGGCTTCACTGCGATTTCGCGTGCTTGTTGTACT CGCTGCTGAGGACGAAGCTTAGCGAGGAGCGCGTGAAGGGGATTGTGCGTGACGCAGTGGAAATTGAGAGGGAGTTTGTG TGCGACGCGCTGCCGTGTGCGTTGGTGGGGATGAATGGGGATTTGATGAGTCAGTATATTGAGTTTGTTGCGGATCGGTT GTTGGGTGCGCTTGGGTGTGGGAAGGTGTATGGTGTGCAGAATCCGTTTGATTGGATGGAGTTGATTTCGTTGCAGGGGA AGACCAATTTCTTTGAGAAGCGCGTTGGGGAGTATCAGAAGGCTTCTGTGATGTCTAGCTTGAATGGGAATGGTGGGGCT CATGTGTTCAAGATGGATGAGGACTTTTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0606800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSSDLRHWDSLTDGERHFITHVLAFFAASDGIVLE NLAGRFMKEVQSAEARAFYGFQIAIENIHSEMYSLLLETYIKDSAEKSNLFRAVETIPCVKKKAEWALKWIDATDSFAER LVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKGIVRDAVEIEREFV CDALPCALVGMNGDLMSQYIEFVADRLLGALGCGKVYGVQNPFDWMELISLQGKTNFFEKRVGEYQKASVMSSLNGNGGA HVFKMDEDF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 160 160 - –
Gene3D
G3DSA:1.10.620.20
3 307 305 1.9E-142
IPR012348
SUPERFAMILY
SSF47240
4 307 304 3.54E-119
IPR009078
PANTHER
PTHR23409:SF34
6 329 324 4.4E-184 –
PANTHER
PTHR23409
6 329 324 4.4E-184
IPR000358
Pfam
PF00268
16 282 267 2.7E-119
IPR000358
CDD
cd01049
17 291 275 3.08962E-140
IPR033909
ProSitePatterns
PS00368
105 121 17 -
IPR030475
Phobius
TRANSMEMBRANE
161 182 22 - –
Phobius
CYTOPLASMIC_DOMAIN
183 329 147 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009263
Biological process Deoxyribonucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of a deoxyribonucleotide, a compound consisting of deoxyribonucleoside (a base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Subterm of
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0606800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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