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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0618400 |
| Transcript ID | LotjaGi1g1v0618400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING-finger E3 ubiquitin ligase, putative; TAIR: AT3G27330.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q6PJ69|TRI65_HUMAN Tripartite motif-containing protein 65; TrEMBL-Plants: tr|A0A151R9V9|A0A151R9V9_CAJCA Tripartite motif-containing protein 65; Found in the gene: LotjaGi1g1v0618400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:116528197..116530608) extracted from Lotus japonicus Gifu genome v1.2.
ACCCTCGAAATATAACCGTTATAGCGATAATTCAAAATAATTCGACCGTTCAACTCGTCTCCTTTACCGCTTGTTGCTTC TCTTCTACTCTGCAAAGCCCAGACCAAATAAAAGTACCACACTCCTATAAACCAAAAGAACAGAACAAAATCAAGCCGTG GGAGAGTGTTGAAGAACGAAAATGGTGGTAACCGAAGAACAAAAATGCACCCCCACAAGCCAAAAGCAGTCAAGTAGCCA AAACATGGTCGCTCTTCTCAGCCCAAGGTTCAAATCTGCGGCTGCTAAAGCCGGTTGGGATGAAGAGGCTCTGTTACTGG CCAGCCTCATCGTCGAAGACACGCCGGAAAGAGATTCCAAGCACAAGAGGCGTTCTATTCTGAACATCAAAACCCCACCA CTATCTAATTCAAAAAAGTAATTCATTTTCCTCTTTTTCTTTTGTTGTTTTTCTTCAACCCCATTTGATTTGTTTTGGTT TTTCTTATCAAAGATTGAATGATCATTGATGTACTTTACGTTTAGGAAGCGCAGAGTTCAGAGGAGTCCACAACTACAAG CAGTCCCTGTAGTTGTTCTTGATCTTGATGCTGAAGATTCTCCCACAAAGGGTCAGTGTCTTGCTTCGAATTATGCCTAT TTTCTTGGTGGTTTGCTTTCATGTGTTTTTTGTTTTTCTTAATGTGATGTTGATAATGGACAGGTAGTGGGAAAAAGAAG AAAGAAAAGAAAAACTCTGTGGCTGAAGGAAGTAAAGGAGGAGCAGATGAATCGAATCAGAATCAGAAGAAGGATTCTTC TGGTGTCTCCTCTTCAAGTTCCACCAGTTCTGCTCTTCCCTGCATTGATAAACTTAAGGAGGAGCTTTCCTGTGCGGTAA GAAGAACCTTGTGATGTTTCATTATGATATTATCTGGCTTTATAGCTTGTTTGGATCTGCTAAATCAATTCTGTGCTAGC AACTTTTCGCGAAAATTGATTTTGGTTTTAGTCATTCTCTGCTGGGACATTATGGTGATTTCTGAATTTTGATTCACTAA TTGCAGATTTGTTTAGAGATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGGTAATATCAATAGCAAAACACTAC CCCCACCCACTAGTCTGCATTTCTTATTTGACCAATTGAAATTATGTTACAAATTTTCCTCAAGTAGCAATTTTTTAGTA AATCCATTACTAGATTTCTGATTTCAGAATTTACAATTTTGCAGCTTTTGTAGAAAATGTCTGCGATCTGCTGCGGACAA GTGTGGCAAGAAATGCCCCAAATGCAGGCAATTGATAAGGTATTTATAAAGTTCATGACTTCACAAAATCACATATTTCA AGTATGGTATTGCTAGATTCTGAGTTCGGTGTGATATTTTGCAGTAATGGACGATCCTGCACCATTAACACAGTTCTATG GAACACAATACAGCTCCTGTTTCCTCAGGAAGTTGAAGCAAGGAAAGCAGCTGCAGCTAGTGCCTTGAATACTAGTGAAA AGGCTCAATGTCTGAGTCCAGAAACAGCATTTTACAGTAACCTAAGGAATCGAAGCACGCAACCTAGTCATGGGGCACCA AGCAGAGGAGCTGGACAAACCCACCAAGGATCCAGGGTTGTTCAGACTAGTTCAAGGAATCAAACCTCAACAACAGCAGC AGCTATAGCAGCAGCATCTGCAAGAGTGAGGACAAGAAGAGTGGTTTCTAACCAAGATGAAGATGCTGCTTTGGCTCTAA GGTTGCAAAGAGAAGAGTTTCTTCAAGTTTATAGGGGGGGAAGCCAGGAGCAGTCCAGCACTTCATTATCTAGAGCAAAT TTGAGGGCTATGGCATCTAGAGCCATGAATCTTCGCATTAGAGATCGAAGAGTATAAATATAGATTGCATGTGCTGCACA ATTTTGAGTGAGTGGTTTTAGTTTTTAGGTACAAGTTGATTGCAAAATCAACCGATTTCCTGAATTCTGGTGATTTAATT TTTCTTTAATTTAAAACATAGAAGAATATGAGTAACATTTGCTCCCCCTAAAGATAATGAAATTAGTAATTTGGCATTCA TTGAGACTAGATTTCTTTATGCTGAATCCTTGTCTGGCCAACATCTTTCTTGATCTTTAAGTGATACTCCAAGGGATATT AGTTCTTGATCATTCAAAGAGTATGTAACAATGATTTGTCATAATTACTTGGAAATGAGATTTCTCACATGTTGGGAACC ATCCAAGGGATATTAGTTATTGATTTGTGACATCAATGTGAATCGCTGTGCTTCTTTGTGTTAATTGGTTGATTCTCTTT TGAGTGATCAGAGAACTTTATGCTAATTTTTCTTGGGTTTTGATCAGAGAACTTCTCTACGTGTTGAAATTAATCTAGTG TTTTGATCTTCC
CDS sequence (LotjaGi1g1v0618400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGTAACCGAAGAACAAAAATGCACCCCCACAAGCCAAAAGCAGTCAAGTAGCCAAAACATGGTCGCTCTTCTCAG CCCAAGGTTCAAATCTGCGGCTGCTAAAGCCGGTTGGGATGAAGAGGCTCTGTTACTGGCCAGCCTCATCGTCGAAGACA CGCCGGAAAGAGATTCCAAGCACAAGAGGCGTTCTATTCTGAACATCAAAACCCCACCACTATCTAATTCAAAAAAGAAG CGCAGAGTTCAGAGGAGTCCACAACTACAAGCAGTCCCTGTAGTTGTTCTTGATCTTGATGCTGAAGATTCTCCCACAAA GGGTAGTGGGAAAAAGAAGAAAGAAAAGAAAAACTCTGTGGCTGAAGGAAGTAAAGGAGGAGCAGATGAATCGAATCAGA ATCAGAAGAAGGATTCTTCTGGTGTCTCCTCTTCAAGTTCCACCAGTTCTGCTCTTCCCTGCATTGATAAACTTAAGGAG GAGCTTTCCTGTGCGATTTGTTTAGAGATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTTTGTAGAAAATG TCTGCGATCTGCTGCGGACAAGTGTGGCAAGAAATGCCCCAAATGCAGGCAATTGATAAGTAATGGACGATCCTGCACCA TTAACACAGTTCTATGGAACACAATACAGCTCCTGTTTCCTCAGGAAGTTGAAGCAAGGAAAGCAGCTGCAGCTAGTGCC TTGAATACTAGTGAAAAGGCTCAATGTCTGAGTCCAGAAACAGCATTTTACAGTAACCTAAGGAATCGAAGCACGCAACC TAGTCATGGGGCACCAAGCAGAGGAGCTGGACAAACCCACCAAGGATCCAGGGTTGTTCAGACTAGTTCAAGGAATCAAA CCTCAACAACAGCAGCAGCTATAGCAGCAGCATCTGCAAGAGTGAGGACAAGAAGAGTGGTTTCTAACCAAGATGAAGAT GCTGCTTTGGCTCTAAGGTTGCAAAGAGAAGAGTTTCTTCAAGTTTATAGGGGGGGAAGCCAGGAGCAGTCCAGCACTTC ATTATCTAGAGCAAATTTGAGGGCTATGGCATCTAGAGCCATGAATCTTCGCATTAGAGATCGAAGAGTATAA
Protein sequence (LotjaGi1g1v0618400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVTEEQKCTPTSQKQSSSQNMVALLSPRFKSAAAKAGWDEEALLLASLIVEDTPERDSKHKRRSILNIKTPPLSNSKKK RRVQRSPQLQAVPVVVLDLDAEDSPTKGSGKKKKEKKNSVAEGSKGGADESNQNQKKDSSGVSSSSSTSSALPCIDKLKE ELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRSCTINTVLWNTIQLLFPQEVEARKAAAASA LNTSEKAQCLSPETAFYSNLRNRSTQPSHGAPSRGAGQTHQGSRVVQTSSRNQTSTTAAAIAAASARVRTRRVVSNQDED AALALRLQREEFLQVYRGGSQEQSSTSLSRANLRAMASRAMNLRIRDRRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| PANTHER | 3 | 265 | 263 | 7.5E-85 | – | |
| PANTHER | 3 | 265 | 263 | 7.5E-85 | – | |
| MobiDBLite | 51 | 150 | 100 | - | – | |
| MobiDBLite | 104 | 123 | 20 | - | – | |
| Gene3D | 109 | 233 | 125 | 4.5E-24 | ||
| MobiDBLite | 125 | 150 | 26 | - | – | |
| SUPERFAMILY | 156 | 227 | 72 | 8.84E-17 | – | |
| ProSiteProfiles | 164 | 203 | 40 | 12.534 | ||
| Pfam | 164 | 202 | 39 | 3.0E-7 | ||
| SMART | 164 | 202 | 39 | 7.1E-7 | ||
| ProSitePatterns | 179 | 188 | 10 | - | ||
| MobiDBLite | 261 | 298 | 38 | - | – | |
| PANTHER | 295 | 369 | 75 | 7.5E-85 | – | |
| PANTHER | 295 | 369 | 75 | 7.5E-85 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi1g1v0618400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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