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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF00097
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 66 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.023s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0000089.1
n.a. RING finger protein [Medicago truncatula] gi|357521767|ref|XP_003607649.1| chr0 20385 22580 -
2 domain predictions
1 GO term
Lj0g3v0097549.1
n.a. IBR domain containing protein [Medicago truncatula] gi|357472415|ref|XP_003606492.1| chr0 41257870 41261433 +
2 domain predictions
1 GO term
Lj0g3v0107819.1
n.a. E3 ubiquitin-protein ligase RNF19A [Medicago truncatula] gi|357489519|ref|XP_003615047.1| chr0 46491473 46503911 -
2 domain predictions
1 GO term
Lj0g3v0239559.2
n.a. PREDICTED: UPF0392 protein RCOM_0530710-like [Glycine max] gi|356574020|ref|XP_003555151.1| chr0 124301676 124303575 -
2 domain predictions
1 GO term
Lj0g3v0239559.3
n.a. PREDICTED: UPF0392 protein RCOM_0530710-like [Glycine max] gi|356574020|ref|XP_003555151.1| chr0 124301676 124303575 -
2 domain predictions
1 GO term
Lj0g3v0263889.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Glycine max] gi|356549928|ref|XP_003543342.1| chr0 136801202 136804748 -
2 domain predictions
1 GO term
Lj0g3v0288699.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Cicer arietinum] gi|502086230|ref|XP_004488151.1| chr0 149998979 149999820 +
2 domain predictions
1 GO term
Lj1g3v0270280.1
n.a. DNA repair protein RAD5 [Medicago truncatula] gi|357509293|ref|XP_003624935.1| chr1 3240152 3248562 -
2 domain predictions
1 GO term
Lj1g3v3754810.1
n.a. PREDICTED: UPF0392 protein RCOM_0530710-like [Glycine max] gi|356574020|ref|XP_003555151.1| chr1 43098162 43100141 +
2 domain predictions
1 GO term
Lj1g3v3904350.1
n.a. PREDICTED: RING finger protein 10-like [Glycine max] gi|356571636|ref|XP_003553982.1| chr1 45441063 45448151 -
2 domain predictions
1 GO term
Lj2g3v1034390.1
n.a. Os08g0414200 [Oryza sativa Japonica Group] gi|115476410|ref|NP_001061801.1| chr2 16469844 16475925 -
2 domain predictions
1 GO term
Lj3g3v0850570.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 69-like isoform X1 [Cicer arietinum] gi|502164838|ref|XP_004513288.1| chr3 10663431 10665765 -
2 domain predictions
1 GO term
Lj3g3v0850590.1
n.a. PREDICTED: E3 ubiquitin-protein ligase makorin-like [Glycine max] gi|356557148|ref|XP_003546880.1| chr3 10669869 10673399 -
2 domain predictions
1 GO term
Lj3g3v2809090.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Glycine max] gi|356549928|ref|XP_003543342.1| chr3 34400295 34403002 -
2 domain predictions
1 GO term
Lj3g3v2809120.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Glycine max] gi|356549928|ref|XP_003543342.1| chr3 34406958 34409140 -
2 domain predictions
1 GO term
Lj3g3v2923210.1
n.a. PREDICTED: ATP-dependent helicase rhp16-like [Glycine max] gi|356547089|ref|XP_003541950.1| chr3 36505266 36508191 -
2 domain predictions
1 GO term
Lj3g3v2923210.2
n.a. PREDICTED: ATP-dependent helicase rhp16-like [Glycine max] gi|356547089|ref|XP_003541950.1| chr3 36505266 36507787 -
2 domain predictions
1 GO term
Lj3g3v2923210.3
n.a. PREDICTED: ATP-dependent helicase rhp16-like [Glycine max] gi|356547089|ref|XP_003541950.1| chr3 36505266 36507392 -
2 domain predictions
1 GO term
Lj3g3v2923210.4
n.a. PREDICTED: ATP-dependent helicase rhp16-like [Glycine max] gi|356547089|ref|XP_003541950.1| chr3 36505402 36507392 -
2 domain predictions
1 GO term
Lj4g3v0216600.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 1-like [Glycine max] gi|356506028|ref|XP_003521790.1| chr4 2709936 2713676 +
2 domain predictions
1 GO term
Lj4g3v0451150.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Glycine max] gi|356521355|ref|XP_003529322.1| chr4 6629297 6630407 -
2 domain predictions
1 GO term
Lj4g3v1909910.1
n.a. PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Glycine max] gi|356544236|ref|XP_003540560.1| chr4 27054406 27058264 -
2 domain predictions
1 GO term
Lj4g3v2860540.1
n.a. PREDICTED: E3 ubiquitin-protein ligase CHFR-like [Cicer arietinum] gi|502139694|ref|XP_004503861.1| chr4 38250681 38273236 -
2 domain predictions
1 GO term
Lj4g3v2860540.2
n.a. PREDICTED: E3 ubiquitin-protein ligase CHFR-like [Cicer arietinum] gi|502139694|ref|XP_004503861.1| chr4 38259952 38280590 -
2 domain predictions
1 GO term
Lj5g3v1412680.1
n.a. PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Glycine max] gi|356576708|ref|XP_003556472.1| chr5 20875043 20879943 -
2 domain predictions
1 GO term
Lj5g3v1483530.2
n.a. PREDICTED: E3 ubiquitin-protein ligase Topors-like [Glycine max] gi|356535101|ref|XP_003536087.1| chr5 21611408 21613469 +
2 domain predictions
1 GO term
Lj5g3v1483530.3
n.a. PREDICTED: E3 ubiquitin-protein ligase Topors-like [Glycine max] gi|356535101|ref|XP_003536087.1| chr5 21611408 21613469 +
2 domain predictions
1 GO term
Lj5g3v1811590.1
n.a. Inter-alpha-trypsin inhibitor heavy chain H3 [Medicago truncatula] gi|357443207|ref|XP_003591881.1| chr5 25902463 25904391 +
2 domain predictions
1 GO term
Lj6g3v1150710.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Cicer arietinum] gi|502086230|ref|XP_004488151.1| chr6 14075608 14078086 +
2 domain predictions
1 GO term
Lj6g3v1150730.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Cicer arietinum] gi|502086230|ref|XP_004488151.1| chr6 14081975 14082816 +
2 domain predictions
1 GO term
Lj6g3v2041930.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Glycine max] gi|356555252|ref|XP_003545948.1| chr6 24036291 24038483 +
2 domain predictions
1 GO term
Lj6g3v2045730.1
n.a. PREDICTED: DNA repair protein RAD5-like [Cicer arietinum] gi|502077783|ref|XP_004485743.1| chr6 24294073 24304878 -
2 domain predictions
1 GO term
Lj6g3v2045730.2
n.a. PREDICTED: DNA repair protein RAD5-like [Cicer arietinum] gi|502077783|ref|XP_004485743.1| chr6 24294073 24304878 -
2 domain predictions
1 GO term
Lj6g3v2045730.3
n.a. PREDICTED: DNA repair protein RAD5-like [Cicer arietinum] gi|502077783|ref|XP_004485743.1| chr6 24294073 24302907 -
2 domain predictions
1 GO term
LotjaGi1g1v0618400.1
n.a. RING-finger E3 ubiquitin ligase, putative; TAIR: AT3G27330.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q6PJ69|TRI65_HUMAN Tripartite motif-containing protein 65; TrEMBL-Plants: tr|A0A151R9V9|A0A151R9V9_CAJCA Tripartite motif-containing protein 65; Found in the gene: LotjaGi1g1v0618400 LjG1.1_chr1 116528197 116530608 +
2 domain predictions
1 GO term
LotjaGi1g1v0632700.1
n.a. RING finger protein; TAIR: AT3G26730.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q32NQ8|RNF10_XENLA RING finger protein 10; TrEMBL-Plants: tr|K7MXM8|K7MXM8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0632700 LjG1.1_chr1 118683188 118690573 -
2 domain predictions
1 GO term
LotjaGi1g1v0729100_LC.1
n.a. RING/U-box superfamily protein; TAIR: AT5G05130.1 DNA/RNA helicase protein; Swiss-Prot: sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1; TrEMBL-Plants: tr|G7L5V8|G7L5V8_MEDTR DNA/RNA helicase; Found in the gene: LotjaGi1g1v0729100_LC LjG1.1_chr1 130075569 130085023 -
2 domain predictions
1 GO term
LotjaGi1g1v0729100_LC.2
n.a. RING/U-box superfamily protein; TAIR: AT5G05130.1 DNA/RNA helicase protein; Swiss-Prot: sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1; TrEMBL-Plants: tr|G7L5V8|G7L5V8_MEDTR DNA/RNA helicase; Found in the gene: LotjaGi1g1v0729100_LC LjG1.1_chr1 130075616 130084580 -
2 domain predictions
1 GO term
LotjaGi1g1v0729100_LC.3
n.a. RING/U-box superfamily protein; TAIR: AT5G05130.1 DNA/RNA helicase protein; Swiss-Prot: sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1; TrEMBL-Plants: tr|G7L5V8|G7L5V8_MEDTR DNA/RNA helicase; Found in the gene: LotjaGi1g1v0729100_LC LjG1.1_chr1 130075616 130084938 -
2 domain predictions
1 GO term
LotjaGi2g1v0363600.2
n.a. RING/U-box superfamily protein; TAIR: AT5G60250.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|P0CE10|DEAHB_ARATH ATP-dependent RNA helicase DEAH11, chloroplastic; TrEMBL-Plants: tr|I1LKC6|I1LKC6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0363600 LjG1.1_chr2 86111551 86115357 -
2 domain predictions
1 GO term
LotjaGi3g1v0062100.1
n.a. RING/U-box superfamily protein; TAIR: AT4G39140.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q95QN6|BRAP2_CAEEL BRCA1-associated protein homolog 2; TrEMBL-Plants: tr|A0A151RGQ0|A0A151RGQ0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0062100 LjG1.1_chr3 6557817 6563906 -
2 domain predictions
1 GO term
LotjaGi3g1v0123400.1
n.a. Makorin RING-zinc-finger protein; TAIR: AT3G08505.1 zinc finger (CCCH-type/C3HC4-type RING finger) family protein; Swiss-Prot: sp|E0X9N4|C3H69_ARATH Putative RING-type E3 ubiquitin transferase C3H69; TrEMBL-Plants: tr|G7IWL8|G7IWL8_MEDTR Makorin RING-zinc-finger protein; Found in the gene: LotjaGi3g1v0123400 LjG1.1_chr3 15104496 15111565 -
2 domain predictions
1 GO term
LotjaGi3g1v0123400.2
n.a. Makorin RING-zinc-finger protein; TAIR: AT3G08505.1 zinc finger (CCCH-type/C3HC4-type RING finger) family protein; Swiss-Prot: sp|E0X9N4|C3H69_ARATH Putative RING-type E3 ubiquitin transferase C3H69; TrEMBL-Plants: tr|G7IWL8|G7IWL8_MEDTR Makorin RING-zinc-finger protein; Found in the gene: LotjaGi3g1v0123400 LjG1.1_chr3 15108555 15110555 -
2 domain predictions
1 GO term
LotjaGi3g1v0123400.3
n.a. Makorin RING-zinc-finger protein; TAIR: AT3G08505.1 zinc finger (CCCH-type/C3HC4-type RING finger) family protein; Swiss-Prot: sp|E0X9N4|C3H69_ARATH Putative RING-type E3 ubiquitin transferase C3H69; TrEMBL-Plants: tr|G7IWL8|G7IWL8_MEDTR Makorin RING-zinc-finger protein; Found in the gene: LotjaGi3g1v0123400 LjG1.1_chr3 15108555 15110569 -
2 domain predictions
1 GO term
LotjaGi3g1v0123400.4
n.a. Makorin RING-zinc-finger protein; TAIR: AT3G08505.1 zinc finger (CCCH-type/C3HC4-type RING finger) family protein; Swiss-Prot: sp|E0X9N4|C3H69_ARATH Putative RING-type E3 ubiquitin transferase C3H69; TrEMBL-Plants: tr|G7IWL8|G7IWL8_MEDTR Makorin RING-zinc-finger protein; Found in the gene: LotjaGi3g1v0123400 LjG1.1_chr3 15109575 15110555 -
2 domain predictions
1 GO term
LotjaGi3g1v0123500.1
n.a. Makorin RING-zinc-finger protein; TAIR: AT3G08505.1 zinc finger (CCCH-type/C3HC4-type RING finger) family protein; Swiss-Prot: sp|E0X9N4|C3H69_ARATH Putative RING-type E3 ubiquitin transferase C3H69; TrEMBL-Plants: tr|I1MJM7|I1MJM7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0123500 LjG1.1_chr3 15115239 15119288 -
2 domain predictions
1 GO term
LotjaGi3g1v0364600.1
n.a. RING/U-box superfamily protein; TAIR: AT5G60250.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|P0CE10|DEAHB_ARATH ATP-dependent RNA helicase DEAH11, chloroplastic; TrEMBL-Plants: tr|I1LKC6|I1LKC6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0364600 LjG1.1_chr3 75030850 75036939 +
2 domain predictions
1 GO term
LotjaGi3g1v0364600.2
n.a. RING/U-box superfamily protein; TAIR: AT5G60250.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|P0CE10|DEAHB_ARATH ATP-dependent RNA helicase DEAH11, chloroplastic; TrEMBL-Plants: tr|I1LKC6|I1LKC6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0364600 LjG1.1_chr3 75030850 75036964 +
2 domain predictions
1 GO term
LotjaGi3g1v0443900.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT4G03510.1 RING membrane-anchor 1; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|V7BV69|V7BV69_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0443900 LjG1.1_chr3 85707689 85710447 -
2 domain predictions
1 GO term
LotjaGi3g1v0454700.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT4G03510.1 RING membrane-anchor 1; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|A0A072U1G6|A0A072U1G6_MEDTR E3 ubiquitin-protein ligase RMA1H1-like protein; Found in the gene: LotjaGi3g1v0454700 LjG1.1_chr3 86803262 86811366 +
2 domain predictions
1 GO term