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PF00097

Source: Pfam

Description

Zinc finger, C3HC4 type (RING finger)

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

Associated Lotus transcripts 66

Transcript Name Description Predicted domains Domain count
Lj0g3v0000089.1
– RING finger protein [Medicago truncatula] gi|357521767|ref|XP_003607649.1|
Domains
7
Lj0g3v0097549.1
– IBR domain containing protein [Medicago truncatula] gi|357472415|ref|XP_003606492.1|
Domains
18
Lj0g3v0107819.1
– E3 ubiquitin-protein ligase RNF19A [Medicago truncatula] gi|357489519|ref|XP_003615047.1|
Domains
16
Lj0g3v0239559.2
– PREDICTED: UPF0392 protein RCOM_0530710-like [Glycine max] gi|356574020|ref|XP_003555151.1|
Domains
13
Lj0g3v0239559.3
– PREDICTED: UPF0392 protein RCOM_0530710-like [Glycine max] gi|356574020|ref|XP_003555151.1|
Domains
13
Lj0g3v0263889.1
– PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Glycine max] gi|356549928|ref|XP_003543342.1|
Domains
17
Lj0g3v0288699.1
– PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Cicer arietinum] gi|502086230|ref|XP_004488151.1|
Domains
15
Lj1g3v0270280.1
– DNA repair protein RAD5 [Medicago truncatula] gi|357509293|ref|XP_003624935.1|
Domains
20
Lj1g3v3754810.1
– PREDICTED: UPF0392 protein RCOM_0530710-like [Glycine max] gi|356574020|ref|XP_003555151.1|
Domains
13
Lj1g3v3904350.1
– PREDICTED: RING finger protein 10-like [Glycine max] gi|356571636|ref|XP_003553982.1|
Domains
15
Lj2g3v1034390.1
– Os08g0414200 [Oryza sativa Japonica Group] gi|115476410|ref|NP_001061801.1|
Domains
17
Lj3g3v0850570.1
– PREDICTED: zinc finger CCCH domain-containing protein 69-like isoform X1 [Cicer arietinum] gi|502164838|ref|XP_004513288.1|
Domains
19
Lj3g3v0850590.1
– PREDICTED: E3 ubiquitin-protein ligase makorin-like [Glycine max] gi|356557148|ref|XP_003546880.1|
Domains
20
Lj3g3v2809090.1
– PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Glycine max] gi|356549928|ref|XP_003543342.1|
Domains
16
Lj3g3v2809120.1
– PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Glycine max] gi|356549928|ref|XP_003543342.1|
Domains
18
Lj3g3v2923210.1
– PREDICTED: ATP-dependent helicase rhp16-like [Glycine max] gi|356547089|ref|XP_003541950.1|
Domains
13
Lj3g3v2923210.2
– PREDICTED: ATP-dependent helicase rhp16-like [Glycine max] gi|356547089|ref|XP_003541950.1|
Domains
13
Lj3g3v2923210.3
– PREDICTED: ATP-dependent helicase rhp16-like [Glycine max] gi|356547089|ref|XP_003541950.1|
Domains
17
Lj3g3v2923210.4
– PREDICTED: ATP-dependent helicase rhp16-like [Glycine max] gi|356547089|ref|XP_003541950.1|
Domains
17
Lj4g3v0216600.1
– PREDICTED: zinc finger CCCH domain-containing protein 1-like [Glycine max] gi|356506028|ref|XP_003521790.1|
Domains
18
Lj4g3v0451150.1
– PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Glycine max] gi|356521355|ref|XP_003529322.1|
Domains
17
Lj4g3v1909910.1
– PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Glycine max] gi|356544236|ref|XP_003540560.1|
Domains
27
Lj4g3v2860540.1
– PREDICTED: E3 ubiquitin-protein ligase CHFR-like [Cicer arietinum] gi|502139694|ref|XP_004503861.1|
Domains
11
Lj4g3v2860540.2
– PREDICTED: E3 ubiquitin-protein ligase CHFR-like [Cicer arietinum] gi|502139694|ref|XP_004503861.1|
Domains
10
Lj5g3v1412680.1
– PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Glycine max] gi|356576708|ref|XP_003556472.1|
Domains
11
Lj5g3v1483530.2
– PREDICTED: E3 ubiquitin-protein ligase Topors-like [Glycine max] gi|356535101|ref|XP_003536087.1|
Domains
9
Lj5g3v1483530.3
– PREDICTED: E3 ubiquitin-protein ligase Topors-like [Glycine max] gi|356535101|ref|XP_003536087.1|
Domains
9
Lj5g3v1811590.1
– Inter-alpha-trypsin inhibitor heavy chain H3 [Medicago truncatula] gi|357443207|ref|XP_003591881.1|
Domains
19
Lj6g3v1150710.1
– PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Cicer arietinum] gi|502086230|ref|XP_004488151.1|
Domains
17
Lj6g3v1150730.1
– PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Cicer arietinum] gi|502086230|ref|XP_004488151.1|
Domains
15
Lj6g3v2041930.1
– PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Glycine max] gi|356555252|ref|XP_003545948.1|
Domains
18
Lj6g3v2045730.1
– PREDICTED: DNA repair protein RAD5-like [Cicer arietinum] gi|502077783|ref|XP_004485743.1|
Domains
28
Lj6g3v2045730.2
– PREDICTED: DNA repair protein RAD5-like [Cicer arietinum] gi|502077783|ref|XP_004485743.1|
Domains
28
Lj6g3v2045730.3
– PREDICTED: DNA repair protein RAD5-like [Cicer arietinum] gi|502077783|ref|XP_004485743.1|
Domains
28
LotjaGi1g1v0618400.1
– RING-finger E3 ubiquitin ligase, putative; TAIR: AT3G27330.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q6PJ69|TRI65_HUMAN Tripartite motif-containing protein 65; TrEMBL-Plants: tr|A0A151R9V9|A0A151R9V9_CAJCA Tripartite motif-containing protein 65; Found in the gene: LotjaGi1g1v0618400
Domains
13
LotjaGi1g1v0632700.1
– RING finger protein; TAIR: AT3G26730.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q32NQ8|RNF10_XENLA RING finger protein 10; TrEMBL-Plants: tr|K7MXM8|K7MXM8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0632700
Domains
15
LotjaGi1g1v0729100_LC.1
– RING/U-box superfamily protein; TAIR: AT5G05130.1 DNA/RNA helicase protein; Swiss-Prot: sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1; TrEMBL-Plants: tr|G7L5V8|G7L5V8_MEDTR DNA/RNA helicase; Found in the gene: LotjaGi1g1v0729100_LC
Domains
21
LotjaGi1g1v0729100_LC.2
– RING/U-box superfamily protein; TAIR: AT5G05130.1 DNA/RNA helicase protein; Swiss-Prot: sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1; TrEMBL-Plants: tr|G7L5V8|G7L5V8_MEDTR DNA/RNA helicase; Found in the gene: LotjaGi1g1v0729100_LC
Domains
21
LotjaGi1g1v0729100_LC.3
– RING/U-box superfamily protein; TAIR: AT5G05130.1 DNA/RNA helicase protein; Swiss-Prot: sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1; TrEMBL-Plants: tr|G7L5V8|G7L5V8_MEDTR DNA/RNA helicase; Found in the gene: LotjaGi1g1v0729100_LC
Domains
21
LotjaGi2g1v0363600.2
– RING/U-box superfamily protein; TAIR: AT5G60250.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|P0CE10|DEAHB_ARATH ATP-dependent RNA helicase DEAH11, chloroplastic; TrEMBL-Plants: tr|I1LKC6|I1LKC6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0363600
Domains
24
LotjaGi3g1v0062100.1
– RING/U-box superfamily protein; TAIR: AT4G39140.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q95QN6|BRAP2_CAEEL BRCA1-associated protein homolog 2; TrEMBL-Plants: tr|A0A151RGQ0|A0A151RGQ0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0062100
Domains
12
LotjaGi3g1v0123400.1
– Makorin RING-zinc-finger protein; TAIR: AT3G08505.1 zinc finger (CCCH-type/C3HC4-type RING finger) family protein; Swiss-Prot: sp|E0X9N4|C3H69_ARATH Putative RING-type E3 ubiquitin transferase C3H69; TrEMBL-Plants: tr|G7IWL8|G7IWL8_MEDTR Makorin RING-zinc-finger protein; Found in the gene: LotjaGi3g1v0123400
Domains
21
LotjaGi3g1v0123400.2
– Makorin RING-zinc-finger protein; TAIR: AT3G08505.1 zinc finger (CCCH-type/C3HC4-type RING finger) family protein; Swiss-Prot: sp|E0X9N4|C3H69_ARATH Putative RING-type E3 ubiquitin transferase C3H69; TrEMBL-Plants: tr|G7IWL8|G7IWL8_MEDTR Makorin RING-zinc-finger protein; Found in the gene: LotjaGi3g1v0123400
Domains
21
LotjaGi3g1v0123400.3
– Makorin RING-zinc-finger protein; TAIR: AT3G08505.1 zinc finger (CCCH-type/C3HC4-type RING finger) family protein; Swiss-Prot: sp|E0X9N4|C3H69_ARATH Putative RING-type E3 ubiquitin transferase C3H69; TrEMBL-Plants: tr|G7IWL8|G7IWL8_MEDTR Makorin RING-zinc-finger protein; Found in the gene: LotjaGi3g1v0123400
Domains
21
LotjaGi3g1v0123400.4
– Makorin RING-zinc-finger protein; TAIR: AT3G08505.1 zinc finger (CCCH-type/C3HC4-type RING finger) family protein; Swiss-Prot: sp|E0X9N4|C3H69_ARATH Putative RING-type E3 ubiquitin transferase C3H69; TrEMBL-Plants: tr|G7IWL8|G7IWL8_MEDTR Makorin RING-zinc-finger protein; Found in the gene: LotjaGi3g1v0123400
Domains
21
LotjaGi3g1v0123500.1
– Makorin RING-zinc-finger protein; TAIR: AT3G08505.1 zinc finger (CCCH-type/C3HC4-type RING finger) family protein; Swiss-Prot: sp|E0X9N4|C3H69_ARATH Putative RING-type E3 ubiquitin transferase C3H69; TrEMBL-Plants: tr|I1MJM7|I1MJM7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0123500
Domains
21
LotjaGi3g1v0364600.1
– RING/U-box superfamily protein; TAIR: AT5G60250.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|P0CE10|DEAHB_ARATH ATP-dependent RNA helicase DEAH11, chloroplastic; TrEMBL-Plants: tr|I1LKC6|I1LKC6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0364600
Domains
22
LotjaGi3g1v0364600.2
– RING/U-box superfamily protein; TAIR: AT5G60250.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|P0CE10|DEAHB_ARATH ATP-dependent RNA helicase DEAH11, chloroplastic; TrEMBL-Plants: tr|I1LKC6|I1LKC6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0364600
Domains
22
LotjaGi3g1v0443900.1
– E3 ubiquitin-protein ligase; TAIR: AT4G03510.1 RING membrane-anchor 1; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|V7BV69|V7BV69_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0443900
Domains
16
LotjaGi3g1v0454700.1
– E3 ubiquitin-protein ligase; TAIR: AT4G03510.1 RING membrane-anchor 1; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|A0A072U1G6|A0A072U1G6_MEDTR E3 ubiquitin-protein ligase RMA1H1-like protein; Found in the gene: LotjaGi3g1v0454700
Domains
17
LotjaGi3g1v0469700.1
– DNA/RNA helicase protein; TAIR: AT1G02670.4 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|P79051|RHP16_SCHPO ATP-dependent helicase rhp16; TrEMBL-Plants: tr|A0A151RMT2|A0A151RMT2_CAJCA ATP-dependent helicase rhp16; Found in the gene: LotjaGi3g1v0469700
Domains
23
LotjaGi4g1v0054900.2
– RING finger protein; TAIR: AT5G01520.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q6IV56|RN141_DANRE RING finger protein 141; TrEMBL-Plants: tr|I3T4Q8|I3T4Q8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0054900
Domains
11
LotjaGi4g1v0055700.1
– E3 ubiquitin-protein ligase; TAIR: AT4G03510.1 RING membrane-anchor 1; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|A0A0S3QZJ1|A0A0S3QZJ1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0055700
Domains
17
LotjaGi4g1v0278600.1
– E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr|I1LNN5|I1LNN5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0278600
Domains
32
LotjaGi4g1v0416200.1
– RING-finger E3 ubiquitin ligase, putative; TAIR: AT1G47570.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q96EP1|CHFR_HUMAN E3 ubiquitin-protein ligase CHFR; TrEMBL-Plants: tr|A0A151S2D8|A0A151S2D8_CAJCA E3 ubiquitin-protein ligase CHFR; Found in the gene: LotjaGi4g1v0416200
Domains
13
LotjaGi4g1v0416200.2
– RING-finger E3 ubiquitin ligase, putative; TAIR: AT1G47570.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5RF77|CHFR_PONAB E3 ubiquitin-protein ligase CHFR; TrEMBL-Plants: tr|A0A151S2D8|A0A151S2D8_CAJCA E3 ubiquitin-protein ligase CHFR; Found in the gene: LotjaGi4g1v0416200
Domains
13
LotjaGi5g1v0219900.4
– RING finger protein; TAIR: AT3G05250.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q80Z37|TOPRS_MOUSE E3 ubiquitin-protein ligase Topors; TrEMBL-Plants: tr|A0A151U530|A0A151U530_CAJCA E3 ubiquitin-protein ligase Topor; Found in the gene: LotjaGi5g1v0219900
Domains
11
LotjaGi5g1v0273400.2
– Zinc finger, C3HC4 type (RING finger) protein; TAIR: AT2G38970.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q55874|Y103_SYNY3 Uncharacterized protein sll0103; TrEMBL-Plants: tr|A0A072VZM6|A0A072VZM6_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi5g1v0273400
Domains
19
LotjaGi5g1v0354400.1
– SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; TAIR: AT1G50410.1 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|Q94BR5|CHR28_ARATH Helicase-like transcription factor CHR28; TrEMBL-Plants: tr|A0A1J7GA61|A0A1J7GA61_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0354400
Domains
28
LotjaGi5g1v0354400.2
– SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; TAIR: AT1G50410.1 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|Q94BR5|CHR28_ARATH Helicase-like transcription factor CHR28; TrEMBL-Plants: tr|A0A1J7GA61|A0A1J7GA61_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0354400
Domains
28
LotjaGi5g1v0354400.3
– SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; TAIR: AT1G50410.1 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|Q94BR5|CHR28_ARATH Helicase-like transcription factor CHR28; TrEMBL-Plants: tr|K7N2N9|K7N2N9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0354400
Domains
28
LotjaGi6g1v0132000.1
– RING/U-box superfamily protein; TAIR: AT3G14250.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q4KLT0|RN217_XENLA Probable E3 ubiquitin-protein ligase RNF217; TrEMBL-Plants: tr|A0A072TPS6|A0A072TPS6_MEDTR E3 ubiquitin-protein ligase RNF144A-like protein, putative; Found in the gene: LotjaGi6g1v0132000
Domains
18
LotjaGi6g1v0220400.1
– RING/U-box superfamily protein; TAIR: AT3G53690.1 RING/U-box superfamily protein; Swiss-Prot: sp|F4KGU4|DEAHC_ARATH ATP-dependent RNA helicase DEAH12, chloroplastic; TrEMBL-Plants: tr|K7MC82|K7MC82_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0220400
Domains
19
LotjaGi6g1v0220400.2
– RING/U-box superfamily protein; TAIR: AT3G53690.1 RING/U-box superfamily protein; Swiss-Prot: sp|F4KGU4|DEAHC_ARATH ATP-dependent RNA helicase DEAH12, chloroplastic; TrEMBL-Plants: tr|A0A072VHQ2|A0A072VHQ2_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi6g1v0220400
Domains
18
LotjaGi6g1v0332300.1
– E3 ubiquitin-protein ligase; TAIR: AT4G03510.1 RING membrane-anchor 1; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|I3RZR2|I3RZR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0332300
Domains
18
LotjaGi6g1v0336200.1
– SNF2 domain-containing protein / helicase domain-containing protein; TAIR: AT1G61140.1 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp|Q94BR5|CHR28_ARATH Helicase-like transcription factor CHR28; TrEMBL-Plants: tr|K7MA23|K7MA23_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0336200
Domains
28

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 1.52