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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0618800 |
| Transcript ID | LotjaGi1g1v0618800.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U4/U6 small nuclear ribonucleoprotein Prp31; TAIR: AT1G60170.1 pre-mRNA processing ribonucleoprotein binding region-containing protein; Swiss-Prot: sp|Q8RXN6|PRP31_ARATH U4/U6 small nuclear ribonucleoprotein Prp31 homolog; TrEMBL-Plants: tr|I1MLN7|I1MLN7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0618800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:116574241..116582133) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGGAAAGGTTAGTATAGTTTTAACTTGTTTGCTGTACTTGTTTTTCAGGCTGTAGGGTTGAGACTTGAGAGTATAT TTTCTTTATACCTTTTTCGAATTTCATGACCTGTTGATTCTTATGTCAGGTATGCAGTAACAGACATGAGGAAGTTAGCC AACAGGATGCAATTTGGAATCCCTGAAGAGAGTTCTTTAGGTACAATTTACTATATTTCACTTGTACTGATCTGATTTAT ATTTGCAATGTGACGTTTTGCTTTTTTATTTGTAATTTGATGCATGCATTTATATTTTACTATAATTTAAATTATAAAGA ACTGAGGATCGGATGGTATAAAAGAGGGAATCCAGTAATAAGCATTGAATAATTATGATGTGATACAAAATCCTTGTTAG GTGCCACTATGCTCGACCAGGTGAGAAATATGAATAATTAGTAAGCAAATATGGGAGGGAGTTGAAGTTGGGGAATGGAA TAGGGTTTTCTGTTAGGCTGTTCATAGGGGTGGCAAAGAGAAAAGCAAGTACTGAGTAAGGGAATTGAGGGGAAAGACCA GGTTCTTGGACTGCCTGGATTATGACCATTTATTTTTCTTTGATTCAGTGTGTCTTCTTTTTCATTACACATTAAAAACT CCACCTTTGATATTACTCTGATATTTAATCAGAAGATAACTAGATGTTTGTATTCTGTTGTTCTTGAGCTGGAATGGCTA ATGTTTCAATCAGGCAGAAGATAAATGTAGCCAACTGAAATTGGGTCTGTAATCACAAGACAAATAGTGGAAAATTTGCA TAAATTCGATAAATGGCCTGAAACATGTTGAAACAGCAATTCTTTGGGATCGGAAATACAATTGTAGTAAATGGGTATAA CCTGTTAGGATCCAAGCTAACAATATATGCAGAAAAGGTAATGCGCTGAAATAGAAACAACTATGATTGCTTATTGATGT CAATAGAAAGTTACAGAGAAGGAAAAGATCCTAGATTCTGCCCAGAGCTAGGCTCCTATTGGAAGCTAATGCTCCCTACT CAACATGACAGCTATGAATAATCCAAGATACCCCTCTACCTCTCATTCACTCCCCTTAAATTCTGTGGTCAGTACAATCA ACCCCTCTCTCTATTCTGTTAGGCAGTTACATAGTATTCCCATTTCCCTTTCTTAGCCCTTCTAGAATATACCCTCCATA CCTTTGGGCCCGCTCCCTTGTAATGGAGCAATTGCTCCTGTGCACTTGACACCTGGTCAGTGTGCCTAACAATACCCCCT CCTAGAACAGCTACCTTGTCCTCAAGGTTAAAATCAGGAAATTGGCTCTTAATGGTTACAACATCCTCCCAAGTGGCTTC CTCCACCGATTTGCCTTGCCACTGAACTAGTAATTGAGGTACGTCTGTACCCTGTTCCACGATCACACGAGTGGCCAACA CATCATGAGGTTGCACAACTTCAGCATGTTCCCCTTCGAGGTTGTCAGGTAACTCAGCATGCTCGTCATAGTCCCCAACT GCTTTCTTGAGCAAGGACACATGAAATACAGGGTGAACGCGCGAATTTGCAGGTAATTTCAAGCGATAAGCAACTGCACC CACCCTAGCCAAGATGGGATATGGCCCGTAGTATCGAGCTGCCAGTTTTGCGTGTACCCGGGTCACGACGGAATGTTGGC GATGAGCCCTCAATTTGACAAAGACCCATTCACCAATTGCAAACGATTTCTCCACTCTCTTAGCATTCGCCTGATTCCTC ATTCTTTCCTGCGCACAAGATAATTGGTTCCTCAGTTGCCTAAGTGCTTCATCCCTGTCCAGCAATTCTCTTTGGACAGC TTCTACACGAGTTTCACCAAGGCCCCAACGAGTGATTGCTGGGGGCTTCCGACCATAAACCACCTCAAAAGGGGTCTGAT TAGTTGCGGAATGAAAAGTTGTGTTAAACCAAAACTCAGCCCAATGCAACCAGTTTGCCCAAGTCTTAGGTTGATCGGCG GAGAAGCAACGAAGGTAAGTTTCAAGACATCGATTTACCACCTCCGTTTGGCCATCGGTCTCAGGGTGGTAGGCAGAGCT CATCTTGAGTTGGGTCCCTTGCAAGCGAAAAATCTCCTTCCAGAAGTGGCTCATAAAAATTGGGTCACGGTCACTTACAA TGGTTGATGGACTGCCGTGCAAGCGTATGATCTCTTTGGTAAAAAGCTCTGCAATGCTTCGAGCTGTGTAAGGATGCTTC AGCGGCATAAAATGGCAATACTTGGATAAACGATCCACCACCACCAAGATTGCTTCGAAGCCCTTGGACTTGGGTAGGCC GGTTATGAAATCGAGTGATATATCTTCCCAAACTCTTTCTGGAATTGGCAATGGTTGTAGAAGGCCAGCTGGGGAAGAAG CTAAGTATTTATGGCGTTGGCAAGTATCGCAACGACGTACATAGTCCTGTATCGCTCCCTTCATCCCGATCCAATACAGG TTCTCAGCCACACGACGGTATGTTCGCAGAAACCCAGAATGCCCCCCTTGAGGGGTAGTGTGGTATTCCTGCAACATGCG AGGAATCAAAGAAGAGGTCTGAGATAGTACCAACCGCGACTTGTAGAAGAGGATCCCTTGTCGGATGCTGAAGTCAGGAT GTGAAGAAGGGTCCTTGAGTAAAGCCTCGATGATCGACTGAAGCTTGGAGTCACCACGAATTTCCTCTGCTACTAGGAAT TTCTCGTCCCAAACTGGATAAGAAACCAGAGTACTCAGTTCTCCTCCGTCGATGATGCGCGACAGGGCATCCGCGCCCTT GTTCAACCTTCCTGGTTTGTAAACAATATCAAAGTTGTATCCCAGAAGCTTGGCAGACCAATTTTGTTGTCCTCCCGTGA CAATTTTTTGATGTAACAGCTCTTTGAGGCTTTTTTGATCTATGGAGACCAAAAACTTCCGGCCCAATAGGTAAGGCCGC CAGTGTTGAATGGCAAGAGCTACTGCCATCAGTTCTTTTTCGTACGCTGATTTTGCCAGATTTCTTACCCCGAGAGCTTT GCTATAGTAGGCTATCGGGTTCTTTCCTTGCATGAGAATAGCCCCTATTCCACTGCCTGAGGCGTCGCATTCCACTACAA ATTCTTTGTCAAAATTTGGAAGAGCCAAAACAGGGGCTGTAGTCAGCTTCTCCTTGAGTGTGTCAAACGCTCGTTGTGCC TCAATTCCCCAATGGAAAGCATCTTTTTTGGTTAATTCCGTCAAAGGCCTCGCTAATTTCCCATAGTCTCGAATAAATTT TCTGTAGTACCCCGTTAGGCCCAAGAATCCCCTCACCCCCTTCGCATTGGTGGGAGTTGGCCACTGCATCACACTAATTA TCTTGTTGGGATCGACGGCCACTCCCTGTTTTGAGATCAAGTGACCTAAGTACTCGACCGTCTGCTTAGCAAAACTGCAC TTCTTTTTGTTTGCTGTCAACCCTTGTTTATGGAGCACGCACAATACCATTTCTAAATGAGCAAGATGAGAATCCCAATC TGAGCTGTATACTAATATATCATCAAAGAAAACGAGGACTCCTATTCGCAGCAAAGGCCGGAAAATCTCATTCATCAAGC TCTGAAATGTAGACGGAGCATTCATGAGACCAAAGGGCATGACCATGAATTCATAATGTCCTTCGTGAGTACGAAAGGCA GTTTTGTGAACATCTTCAGCCCTCACTCGCACCTGATGATATCCTGATTTCAGGTCCAATTTTGAAAAGAATTGGGCACC ATGCAGTTCATCAAGAAGTTCCTCGATCACCGGTATGGGAAACTTGTCTGGGATCGTTACTTTGTTGAGTGCTCGATAGT CAACGCACATCCTCCATGATTGATCCTTCTTCTTTACCAGAATAACCGGACTTGAATATGCACTGGTGCTTTGACGGATT ATCCCATCGGATAACATTTCCTTGACCTGTTTTTCAATCTCATTTTTGTGGTGATGTGGATAACGATACGGCCTCACATT AACCGGGCCTTGCCCTTCTTTGATGTTGATACAGTGTTCCCTGCCTCGGCTTGGTGGCAAACCCACCTTTGCTTTGAAAA CTCCTTCGTATTTCTCAAGTAGCTTCGCTAAACCCGCTTGCTGGTCTGTGGTGAGGCTTTCTTCCTCGCGTTTCCCTTGT TTCACCGGTTCTAAGAGACAGAGGACCCCAGTTTCCCCTCCCTTTTCCCGACGGAGAATCTGCTGCAGTGCCACCATGGA TTCCCTGCCCGCACTTAAACCCTGTAGCTTGACCCATCGATCACCCTTCCAGAAACTTGAGATTGCCAATTAGCGATCGT ATCCCCCAATGTCTTCAACCATTCGATCCCCAAAACCATGTCAGGCCCCCCTAGCTCGAACAGATGTGGATTGCATTCGA GGGAATAATCCCCCATTACAAGTTCAATGCTCCTACAGCGGCCTCGGGCGTGGGTTTGAAACCCATCTCCTAGCTTGATG GTCATTCTTGGTGTGTCTTCTACCTCCCAATTCATGCGTTGCACGAGCTTGAGGTCAATGAAATTGTGGGTTGCCCCACT GTCAACCAACACCAACATAGGAACTCCACGAATTGTACCCTGTAGCTTCATCGTTTGGGGCTGTTCCTGAAGAGTATTTG CCATGTTGTAAAAACTCATCATACTCATTTCACCTTGGTCTCCTTCTTCCTGCTCCTCTACTTCCATGGCTAGCACATTC CCGTCCTCAGTTTCTTCATCCCCCTCTTCTACTATGAGAACTCTCAATTGCTTATCTGGACATTGATGTAAGGGGTGGTA TGGTCCTCCACATTTGAAGCACTGACCCTTCTGCCTACGTTCCAGTAATTGTGGATAGGTCAAGTGAGAAAACCCTCTAT CTCGCGGCCCAACTCGTCTTTCTGTTTGATTTTTTGTTTCAACCTTTGGGCCATTAAAAACTGCCTTGGTGGTAGGCCCG GAGTCTTTAGTGTCTTTGACCCATACCCAATCTGCACCACCCGTTCGTCCTGATCCACCCGACCCGGTCTTGAACCCTGA ATTTCCAAACCGATTACTCCTTGAGTAACCCGATCCGGTATCCCCCTTCACCTCCTTCTCTACTGCCCTAGTCACCGCCA GCAATTTTGATCGGCTAACTCCTCCCATCGCCGCCAGACTACGGACCTTCCCACGGAGCTCCTCCTTCAAACCATGGAGG AAATAGCCCTGAAATTGCTTATCGGGCAATTTAGGGATTTGAGCGGTGAGGTACTCAAATTCGATGATGTATTCTTCCAC CGTCCCTTTCTGTCGCAGCTCGGTGAGTTGCTCATACACGTCACCAATACCGTGTCCTCCGTATCGCTCCAGTAATGCTT CACGCAACCGCTCCCATGTCAGCGATTCCTCCGCTTCAAGAAGAGCATTGTAGAAATGGATTGTGGGTCCATCCATGCTC AGTTGTGCTAAACTCACCTTGACCTCCGGTGATGTTTCCTGAACCTTGAAGTATATCTCAGCTCGAGATATCCAGCCCGC GGGGTCCTTGCCATAAAAAACCGGAAGCTCTACTTTCTTTACCGATTGACGGAACTCCGTCAGCGCCTCACCGTGCAGCT GGTGAGCTCGCCGCTCCCCTCCTGAGATCTGGTTCAGATTTATCACCTGCTCCACAGATCCCGTTCGCACGCCAGAACTA CCTCCAATGTCGCGATTGACACTCGTCTCCTCAACGTGGACTGATTTCCCCAGTGATCGTTCCATCAAAGCTACCAACGA CGTTGGTAGATCCTTGACTGCGGTGGTGACCGCTGCTAGAGATGATCGCACCTCTGCAAGCTCCGACTCCAGCGCATCGA TTTTCGCTTCCATGAGGTTCGTCGATTGTTTGGATTTTCTGGGTGGCATCCACTGGCTCCGTTTCCGGATCCGGCAGGTC GGACCAAATTGTTAGGATCCAAGCTAACAATATATGCAGAAAAGGTAATGCGCTGAAATAGAAACAACTATGATTGCTTA TTGATGTCAATAGAAAGTTACAGAGAAGGAAAAGATCCTAGATTCTGCCCAGAGCTAGGCTCCTATAGGAAGCTAATGCT CCCTACTCAACATGACAGCTATGAATAATCCAAGATACCCCTCTACCTCTCATTCACTCCCCTTATATTCTGTGGTCAGT ACAATCAACCCCTCTCTCTATTCTGTTAGGCAGTTACATAGTATTCCCTTTCTTAGCCCTTCTAGAATATACCCTCCATA CCTTTGGGCCCGCTCCCTTGTAATGGAGCAATTGCTCCTGTGCACTTGACACCTGGTCAGTGTGCCTAACATAACCTCTA CAACCTTGAGGCAGAATATTCTGCTAAAAACTGTTACCTGATTCCCCGTCAATAATCCAGGTCAAAGTATTAGTGTACCT GTACCAGCCCACCCAAATTTCCATTCAAACGTAATAAGAGTCATAAAGTCTTTAGTAGTCCTAACTCAGTGATAAAGACA GTATGAAATCCTTACGAACATGACTTCAGCTTTTTTTAATTATTCTTTTAATATTGTTAATTTGTAAAAATTTCAACATC TCCTTACTCTTTTATTTATGCTTTGGTTATAGGTGATGGTCTGGGTGAGGGTTATGGAATGCTTGGTCAGGCTGGCAGTG GCAAGCTTCGTGTGTCTATGGGTCAAAGTAAACTTGCTGCAAAAGTTGCTAAGAAGTAAGTCCTTGTTGCTTTTAGTTCT ACGTATCTTATTATGTTCTGGTTACTTTATTTTGTTGCAAGATGCTGAATCATATTTCCTGTCAAGCTATACTACTAGCT GATATGAATGACAATTCTGATGGCTTATTTTCATTTATCAGATTCAAGGAAAAGAGCTATGGCAGCAGTGGTGCTACATC TGGTTTAACCTCAAGTCTTGCATTTACTCCTGTGCAGGTCAGCATCATGAATTACTGTTTCTGGAACTTTTCTCTTGCTT TGTAGCAGTTTAGCTCCATATCTAGTGTATGAACTGTTAGTTTTGTGTAAAAATGGCAATGGTATGTGAGACCTATGATG GAAACCTTGTAAAGTATGAGAAGCTGAAACACATATTTAGGGACAGGAATCAGTGGGTTGCTTCCCTACTGCTATTTTGA CAGATTTATAAGGCTGCTATGAGGGGCTCAAGCAGTTATTAAGATGACACTGGTGATTCAGTGAGTGTCCGAATAAATAT GGCAACATTATACATTGCAGGGGCTACACCTGGGCCTTCAAAATTAGAGACATTGAACCCCATTGGAGTAAAGAATCACC ATCTTTTGGGACAAAGAACAATAAGCTTCCTAGTTCCATATTTATTCGGACACATTGCCCATTTACCCACTTCCACATCT CTATTGTCCTCTCCGAAGCGATTTTGTTGCTGATAGAGGATTATAGGCTGTGATTTCCCTGGTCTTCTCACTTATGCAAA CTGCAGTCTTATAGTCTGTGATTTAGTCAGTGTATCCAATGAATATGATTCTCTACTCAGATGAGGATGGTAAATGGATT ACATCGGTTACCAATCTGTGACATCATCAAGCAAGTTCTCTAAATGTCGTGTCCATTTGTGCCTTGTGAAACCCTGTTAT CATTTGCCAATGCTGGTGTTATCTGTAAAATAGTTGGAAAAACTTCTAGTTCAGCATGGATGACGCTTAAATCACTATAC TGATATTCAGCATGGATGACGCTTAAATCCCAATAACTTAAGTTGATTAGTTTACTTCTATGAAGTTTTGCATTCAAGTT CATGTATATCTTTGTTTATTTTCAGGGGATTGAGCTGTCAAATCCACAGGCCCATGCACATCAACTTGGTACTGGAACTC AAAGTACCTATTTCTCTGAAACAGGAACATTTTCGAAGATCAGGAGGACTTGA
CDS sequence (LotjaGi1g1v0618800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGAAAGGTATGCAGTAACAGACATGAGGAAGTTAGCCAACAGGATGCAATTTGGAATCCCTGAAGAGAGTTCTTT AGGTGATGGTCTGGGTGAGGGTTATGGAATGCTTGGTCAGGCTGGCAGTGGCAAGCTTCGTGTGTCTATGGGTCAAAGTA AACTTGCTGCAAAAGTTGCTAAGAAATTCAAGGAAAAGAGCTATGGCAGCAGTGGTGCTACATCTGGTTTAACCTCAAGT CTTGCATTTACTCCTGTGCAGGGGATTGAGCTGTCAAATCCACAGGCCCATGCACATCAACTTGGTACTGGAACTCAAAG TACCTATTTCTCTGAAACAGGAACATTTTCGAAGATCAGGAGGACTTGA
Protein sequence (LotjaGi1g1v0618800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKERYAVTDMRKLANRMQFGIPEESSLGDGLGEGYGMLGQAGSGKLRVSMGQSKLAAKVAKKFKEKSYGSSGATSGLTSS LAFTPVQGIELSNPQAHAHQLGTGTQSTYFSETGTFSKIRRT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 94 | 94 | 5.9E-28 | ||
| PANTHER | 1 | 121 | 121 | 5.7E-58 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Spliceosomal tri-snRNP complex assembly | The formation of a tri-snRNP complex containing U4 and U6 (or U4atac and U6atac) snRNAs and U5 snRNAs and associated proteins. This includes reannealing of U4 and U6 (or U4atac and U6atac) snRNAs released from previous rounds of splicing to reform the U4/U6 snRNP (or U4atac/U6atac snRNP) as well as the subsequent association of the U5 snRNP with the U4/U6 snRNP (or U4atac/U6atac snRNP) to form a tri-snRNP that is ready to reassemble into another spliceosome complex. | ||
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Cellular component | U4/U6 x U5 tri-snRNP complex | A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins. |
Expression pattern of LotjaGi1g1v0618800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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