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LotjaGi1g1v0620000.1

Overview

Field Value
Gene ID LotjaGi1g1v0620000
Transcript ID LotjaGi1g1v0620000.1
Lotus japonicus genome version Gifu v1.2
Description Germin-like protein subfamily 1 member 1; TAIR: AT3G05950.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q9SFF9|GL17_ARATH Germin-like protein subfamily 1 member 7; TrEMBL-Plants: tr|I3T902|I3T902_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0620000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:116720262..116721759) extracted from Lotus japonicus Gifu genome v1.2.

AAGTAATTACATACGTACACAAAATCATTGAAGAGTAATAGTACTGAGAGCCAAAATGGAAGTTGTCTACTTCCTTGTTA CCATCTTGGCTTTGGCATCCTCTTTTGCCTCTGCCTATGACCCGAGCCCTCTACAAGATTTCTGTGTGGGAATCAATGAC CCAAAATATGGTGGTATGTTTCCTAAATTCTCATAATTCCTTCAACCCAAATGTTAAGTTTTTTTATTTGTGACATGACT TATTAGATAATTAAATGACGTAGTGATTAATTGGCTAATGAAAGTGGGGTTACACAACTACTTAATTTGAGGGTTACTTG TGCCTTTGGTTAGATAGGGCTTCACCTTTATTGGAGTCGTCCACTTGTTAGCTAGCTCTTGATGTCGGACCACCATGAGT GGTAGTTCGATAGACACACAACCCTCCAAGCTCTTAATTGCCTCGTGCTTATAATAGGCTTGAAATGTGAGACTACTATG AGTGATAGCTCGACAAACACACAATACTCCAAGCCGTTAAGCCTTGTGCGCATATCAGAGTTGAAGTGTGACTCACTCCT TAGACCAAGCTACACTAACTACCTTAGTGGTAGCTCGAATAATAGTATTCAAATTTGTATTTGTCATTTTAAACAAATTT CCACACCGTCTCCTCCAATTAGTAATTATTAATTTAATAAAAACGTGATTAATATGTTAATTTTTCGTCCTTTTACCAAT TTTTTCTTGTTCTTTCCCTAATTATAATATTAAATTAAAAATTGTTTATGCATAATTTACAGTATTTGTGAACGGAAAAT TCTGCAAAGACCCTGCACTTGTGAAAGCTGAAGATTTCTTCAAACATGTTGAACCTGGGAACACCTCTAATCCACTTGGC TCTAAAGTGACCCCTGTCACAGTTGAGCAACTATTTGGACTAAACACACTTGGCATATCTTTGGCTCGCATAGATTTTGC ACCTAAAGGTTTAAACCCTCCACACACTCACCCTCGAGCCACAGAGATCCTTATAGTCCTTGAAGGAACTCTCTACGTTG GATTTGTCACATCCAATAACGCAAATGGTGGTAATCGTCTCTTCACCAAAGTGCTCAACAAAGGTGATGTGTTTGTGTTC CCAATTGGTCTCATTCATTTCCAATTGGACGTGGGAAATGGAAATGCAGTTGCTATTGCTGGATTGAGTAGTCAAAATCC TGGAGTTATCACCATTGCAAATGCTTTGTTTAAAGCTGATCCCCCTATATCTAAAGAGGTTCTTACCAAAGCTTTCCAAG TGGATAAGAGCATAATTGATTATCTTCAAAAGCAGTCTTGGTATGATAACAACTAGTTTCGTTTCATTCAGATTGTATCA ACCTTGTATTGATTACCTCATGCAATAGCCTTCTATATACAATTGCTATTGTAATAAATAAAATGGATGTTATTTTAAAT ATTGTAGCTTTTATGTTTGGAGTTTAATTTATTTGGTGGAATGGATGAAAGTTTGGAG 

CDS sequence (LotjaGi1g1v0620000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGTTGTCTACTTCCTTGTTACCATCTTGGCTTTGGCATCCTCTTTTGCCTCTGCCTATGACCCGAGCCCTCTACA AGATTTCTGTGTGGGAATCAATGACCCAAAATATGGTGTATTTGTGAACGGAAAATTCTGCAAAGACCCTGCACTTGTGA AAGCTGAAGATTTCTTCAAACATGTTGAACCTGGGAACACCTCTAATCCACTTGGCTCTAAAGTGACCCCTGTCACAGTT GAGCAACTATTTGGACTAAACACACTTGGCATATCTTTGGCTCGCATAGATTTTGCACCTAAAGGTTTAAACCCTCCACA CACTCACCCTCGAGCCACAGAGATCCTTATAGTCCTTGAAGGAACTCTCTACGTTGGATTTGTCACATCCAATAACGCAA ATGGTGGTAATCGTCTCTTCACCAAAGTGCTCAACAAAGGTGATGTGTTTGTGTTCCCAATTGGTCTCATTCATTTCCAA TTGGACGTGGGAAATGGAAATGCAGTTGCTATTGCTGGATTGAGTAGTCAAAATCCTGGAGTTATCACCATTGCAAATGC TTTGTTTAAAGCTGATCCCCCTATATCTAAAGAGGTTCTTACCAAAGCTTTCCAAGTGGATAAGAGCATAATTGATTATC TTCAAAAGCAGTCTTGGTATGATAACAACTAG 

Protein sequence (LotjaGi1g1v0620000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEVVYFLVTILALASSFASAYDPSPLQDFCVGINDPKYGVFVNGKFCKDPALVKAEDFFKHVEPGNTSNPLGSKVTPVTV EQLFGLNTLGISLARIDFAPKGLNPPHTHPRATEILIVLEGTLYVGFVTSNNANGGNRLFTKVLNKGDVFVFPIGLIHFQ LDVGNGNAVAIAGLSSQNPGVITIANALFKADPPISKEVLTKAFQVDKSIIDYLQKQSWYDNN 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 2 2 -
SignalP_GRAM_NEGATIVE 1 20 20 -
SignalP_EUK 1 20 20 -
PANTHER 1 222 222 9.9E-123
PANTHER 1 222 222 9.9E-123
SignalP_GRAM_POSITIVE 1 20 20 -
Phobius 1 20 20 -
Phobius 3 14 12 -
Phobius 15 20 6 -
Phobius 21 223 203 -
Gene3D 21 219 199 5.6E-85
SUPERFAMILY 22 217 196 4.15E-45
SMART 59 212 154 4.3E-32
Pfam 63 209 147 3.5E-47
ProSitePatterns 102 115 14 -
PRINTS 107 127 21 4.8E-27
PRINTS 142 162 21 4.8E-27
PRINTS 175 190 16 4.8E-27

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Manganese ion binding Interacting selectively and non-covalently with manganese (Mn) ions.
Molecular function Nutrient reservoir activity Functions in the storage of nutritious substrates.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0620000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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