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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0620100 |
| Transcript ID | LotjaGi1g1v0620100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Germin-like protein subfamily 1 member 1; TAIR: AT5G39100.1 germin-like protein 6; Swiss-Prot: sp|P92997|GL113_ARATH Germin-like protein subfamily 1 member 13; TrEMBL-Plants: tr|I3T902|I3T902_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0620100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:116753793..116756129) extracted from Lotus japonicus Gifu genome v1.2.
GAATGATTCATTGTTTTTTGAAGGTAGGAATGGTTCATTGTTAATTAGAAAATTAATTGCGTTAAAGATAAACAGCAAGT GAGCAAACCACTTCAATGTTTTATCCTTATAAATAGCAAGCTTAACATGCTTCAAAACACACAAGAAATTACATACATAC ACAGAACCATTAAGGAGTAATATAGTGAGAGGCAAAATGAAAGTTGTGTACTTCCTTGTTACCATCTTGGCTTTGGCATC CTCTTTTGCCTCTGCCTATGACCCCAGCCCTCTACAAGACTTTTGTGTGGGAATCAATGACCCAAAAGATGGTGGTATGT TTCCTAAATCCTCATAATTCCTACTACCCAAATGTTAATTAAGTTTGTTTTTCGTTTAGGTCATGCAAATTGCAAGCAGT GATAGGGCAAGTTGATGGAAAGTGGGGTAGTCTTTTTTTTTTTTGACGATGAAAGTGGGGTAGTGGTTCCCTCAAAGATA ATTCCTTTTATTTTTTAGTTTCTTATATTTTTTTTTATAGTTGTTCTCTCAAAACTCTGGGGATTAGAGTCGGTGACGAT ATCAAATCCCTATTATCTTAGGCTAGCTTTTAGTAGGCTTAAAATTGTCTCTAGGCGCCGTTTCATTTTTGGGACGTGAT TTATTGGATGATTGAATGATGTAAATTGACTAATGAATGTGAGGTTACACAACAATTTTTTTAGATAAGACAAACTTAAT TAAAGAAGTATTATGGGTACTTCAATCCCATGGTGAAAATACAAAGTAAAGGGAAATGCTAAAAGGCCAAGAAAAACAGA GTATTGTGTGATGCCCAGGCTACAGGAGAAAAAAATTAAAAACGGAGCCCGGTAACACAACTACTTAATCTAAGGGTTAG TTGTTCCTCTGGTTAGACCGGGCTTTGCCTTTATTGGAATCACCCACTCTTTAGCTTCTGAGGTCGGGCCACCATGAGTG GTAGCTCGGTAGCCTCAATCCTCCTAGCTTTTAATTGTCATGTGCGCTTATGACTCGCTCCTTAGACCGGACTACCATGA GTGGTAACTTTATAGATACAATAGTAATATTCAAATGTTATATTTGTTTTTCTAATTAAATAAATTTTTACACCGCCTCC TTAGATCGGGCTTCCATGAGTGGTAACTCTATAGATACAATAGTAATATTCAAATGTTATATTTGTCTTTCTAATTAAAT AATTTTTTACACGGCCCCTCCAATTAGTTATTGTTGATTTAAAAAAAAATTGTTTAATATGTTAATATTTCGTAAACAAG TAATTAGAAAACTTGTTTCTCTAGTTCTTTCCCTATTTATAAGATTACAATAAAAATTGTTCATGCGTACAGTGTTTGTG AATGGAAAATTCTGCAAAGACCCTGCTCTTGTGAAAGCTGAAGATTTCTTCAAACATGTGGAACCTGGGAGCACCTCTAA TCCACTTGGCTCTAAAGTGACCCCTGTCACAGTTGAGCAACTATTTGGACTAAACACACTTGGCATATCTTTGGCTCGCA TAGATTTTGCACCTAAAGGTTTAAACCCTCCACACACTCACCCTCGAGCCACAGAGATCCTTATAGTCCTTGAAGGAACT CTCTACGTTGGATTTGTCACATCCAATAACGCAAATGGTGGTAATCGTCTCTTCACTAAAGTTCTCAACAAAGGTGATGT TTTTGTGTTCCCAATTGGTCTCATTCATTTCCAATTGAATGTGGGATCTGGAAATGCTGTTGCTATTGCTGGATTGAGTA GTCAAAATCCTGGAGTTATTACCATTGCAAATGCTTTGTTTAAAGCTAGTCCTCCAATTTCTCAAGAGGTTCTTACCAAA GCTTTACAGGTGGATAAGAGCATAATTGATAATCTTCTAAAGAAGTCTTGGTATGACAACAACTAATATTAATACTCGTT TCATTCAGATTGTATAAGAATCTTGTACTGATGTCACCTCATGCAATAGCCTTCTCTATACAATTGCTATTGTAATAAAT AAAATAAAATGCATGCTTTATTTTTTGATATTGTAGCTTTTATGTTTGGAGTTTAATTTTGTATTGTTGAAATGGAAGAA AGTTTGGAGTTTAATTTGGTTCAACACATTATTATTCTCACGTTAAAATTATTATTTGGGTGTACTTTCTCAAGTTAATT TAATTTAATAACAAGGATCCCTTAATACTCCAATCATATATTTAAAGTGTGTCGAAGGATTAATCAAGAAGAATTAGTTA TCCAATTATGTTTGAGAGATAATGGAAAGGAGACCCTCAAACTTGAAAACGACTAAGCTTTTTGCCTTGCGACTTGCCTC TCTCACTCAAGAGAAGG
CDS sequence (LotjaGi1g1v0620100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGTTGTGTACTTCCTTGTTACCATCTTGGCTTTGGCATCCTCTTTTGCCTCTGCCTATGACCCCAGCCCTCTACA AGACTTTTGTGTGGGAATCAATGACCCAAAAGATGGTGTGTTTGTGAATGGAAAATTCTGCAAAGACCCTGCTCTTGTGA AAGCTGAAGATTTCTTCAAACATGTGGAACCTGGGAGCACCTCTAATCCACTTGGCTCTAAAGTGACCCCTGTCACAGTT GAGCAACTATTTGGACTAAACACACTTGGCATATCTTTGGCTCGCATAGATTTTGCACCTAAAGGTTTAAACCCTCCACA CACTCACCCTCGAGCCACAGAGATCCTTATAGTCCTTGAAGGAACTCTCTACGTTGGATTTGTCACATCCAATAACGCAA ATGGTGGTAATCGTCTCTTCACTAAAGTTCTCAACAAAGGTGATGTTTTTGTGTTCCCAATTGGTCTCATTCATTTCCAA TTGAATGTGGGATCTGGAAATGCTGTTGCTATTGCTGGATTGAGTAGTCAAAATCCTGGAGTTATTACCATTGCAAATGC TTTGTTTAAAGCTAGTCCTCCAATTTCTCAAGAGGTTCTTACCAAAGCTTTACAGGTGGATAAGAGCATAATTGATAATC TTCTAAAGAAGTCTTGGTATGACAACAACTAA
Protein sequence (LotjaGi1g1v0620100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKVVYFLVTILALASSFASAYDPSPLQDFCVGINDPKDGVFVNGKFCKDPALVKAEDFFKHVEPGSTSNPLGSKVTPVTV EQLFGLNTLGISLARIDFAPKGLNPPHTHPRATEILIVLEGTLYVGFVTSNNANGGNRLFTKVLNKGDVFVFPIGLIHFQ LNVGSGNAVAIAGLSSQNPGVITIANALFKASPPISQEVLTKALQVDKSIIDNLLKKSWYDNN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 222 | 222 | 1.5E-120 | – | |
| SignalP_GRAM_POSITIVE | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 222 | 222 | 1.5E-120 | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| Phobius | 15 | 20 | 6 | - | – | |
| Phobius | 21 | 223 | 203 | - | – | |
| Gene3D | 21 | 219 | 199 | 1.2E-83 | ||
| SUPERFAMILY | 22 | 217 | 196 | 1.97E-45 | ||
| SMART | 59 | 212 | 154 | 4.2E-32 | ||
| Pfam | 63 | 209 | 147 | 6.6E-48 | ||
| ProSitePatterns | 102 | 115 | 14 | - | ||
| PRINTS | 107 | 127 | 21 | 5.9E-28 | ||
| PRINTS | 142 | 162 | 21 | 5.9E-28 | ||
| PRINTS | 175 | 190 | 16 | 5.9E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Manganese ion binding | Interacting selectively and non-covalently with manganese (Mn) ions. | ||
| Molecular function | Nutrient reservoir activity | Functions in the storage of nutritious substrates. |
Expression pattern of LotjaGi1g1v0620100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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