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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0629500 |
| Transcript ID | LotjaGi1g1v0629500.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Hydroxyproline-rich glycoprotein family protein; TAIR: AT2G33490.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|O22799|Y2349_ARATH Uncharacterized protein At2g33490; TrEMBL-Plants: tr|V7CU24|V7CU24_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0629500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:118077009..118084246) extracted from Lotus japonicus Gifu genome v1.2.
CACCCACCCAGCCACCTTCTTCACTGTGTTGAACACTGTGGAAATTCATTCATTCATTCCCACAGCACTTTCTTTCCTCC TTCCTTCGATTCTCCGCTGAGATTCCCTCAATTCCCTCGCCCCTTCTCTCTTGCCGTTTTGCGCCGTCTCACCGTCGTGT CGTCGCGGTGGAAGGAAGAAGATGAAGTCCTCGCTCAGCAAGTTGAGGAAAATTGCACTTCACAAGAGCACCGTTGCCAA AGAAAAGAACGAGTTTCAACCTTCACCCGTCTTCGACGAGCTTGCTCTCGCTGCCAAGGTTCTCTCTCTCTCTCTCTCTA ATCCCGATGTGACTGTTTCTGATTGCAGCATCGAATTGGCCTCCATTGAAATCAATGTTTCAATTTCAAGATTTGATTTC AGTTTTATGGGTTTTGCTCTTATCATCATCCGAATCATGCTTGGTTCACATGAAGTTCATGTTTGTGCTACGATTTTTCT TAATTTGTTTTGGGGGAAAATTAGCTTTAGCCTTTAGCTCATTAGCTGTGAATCTTATTGTTCTAGAGTTAACACGAGGA TAATTGTGTTTCGAATGAAAATAATTGGTCCTTTGGGTTCTTGCTTGTGCGGTTGCGCCGAATTAATGGTGTCATAGTTG TATTACAGGCTTAGGAGGTGAAAATTTGAGTGTGGTAATGGGGAGTTGGTGAGAAATGTGTGATAATTTGGTGCCCATTT TCTTATATATGGCTTACTTATTGTAGTGGCGTTACGGGTTTCCTTTGCCATTTCGCAGGACATGCAAGAGATGAGAGATT GCTATGATAGCCTGCTTGCTGCGGCTGCTGCTACGGAAAACAGTGCTTACGGTAAATATTAGTCTTTGACCCTCAGCTGG TAGCTCATCTTGTTCCCTTTTGTCCCCCTCGCATATAACATCAGAACTTAGGAGCTAGATGTGCATTTTTTTTTATCCGA ATCCTCCCTCATGTATGTCTCAAAAAATGTAAGGCATAAATTATATGTGCAATATATACAATGCCTCCACCAATTTGAGG CACGGATTTACTTTTCTAATTGCCATTGGCCAATAGTTGGTAATCCACGACCGGCATGGTCTTATGCACTATCAATAAGG TTAGGTAATGATCAGTATTGCTATCCAAAGTACCTGAAAGTTGAAAACAGCTCTTGATGCTGAACTTGCACTCTTGCCTT GGGAAATCCTTCTTCTTATTATTGAAATTGTGTGTTGTGACTACCTTTAAAATGTAGTGAGATAGTAGCATAAACATATC TGAAAATATCTCAGTCTTCTCTCCAGGGTATCCTTTTTCGTACCGTACCACCACACTATACTTTCAATATTGATCATTAG ACAAACATTTAGCATTTGTTTAGTGAGGAATGCTAACAGAACACTATTTTTAAAATACTCTTCAACACAGTCTGTGTTAT TGGTCCATTCTTGAAAAGTTCATTTGGTTTCCTCATCAATAGATTATTTCTAAAAGAGTGTGTTGACTTCATACAAAATA GACCAATAATGGAAAGTGTGTTGCTAGCATTTGTCTAGTTAGCTTCTTTTTTTTTTTGGGGATCAACTTTACTGCCTTGA AAATGCTAAAGTCTCTTGGGCATCCTTTCTCATGTTTGTGTATTCCAGAATTTGCTGAGTCACTGCAGGAAATGGGTACT TGTCTATTGGAGAAAACTTCCTTAAATGATGATGAAGAAAATGGTGAGTGGGTAAACATTTCATGACTGCCCTATCTAAG TTACTTAGCATTTAAATCATGTTGCTACAGTTATTATGAACTGAGTGCAGGTAAAGTTTTGGGGATGCTTGGAAATGTGC AGCTTGAACTTCAGAAACTTGTTGATAGCTATGTAAGCCTTCGTTTGGATGAAACCTTTTAATTGCTTTGTTCTTTAAGC ATAGTTCATTTGCAAAACATTCATTATGGTTTTCCTTTCTGTTCCTCAGCGTTCTCACGTAGCACTCACAATAACCAAAC CATCAGAGTCTCTGCTTAATGAACTAAGAACTGTTGAGGTATGTTTATGTACTTTTCTTTTTTATCAAATTTAATTATTT AAAGCATACCCAACAGGGTCTGGGTCTGCGTGGTAAAAGCAGACGTGGTCTTTCATTGTTTCTCACTTTTCTCTCATTTA ATTCTTATCAGTATTTCACTTTAATAATTAATATTTTTAATCGTATAAAATATCCTTAAATGAATTTAAAGTTTGTAAAC TTCAACTCCTTATTAATTCTTTGACTAATGCTTTCCCAATTCAATTTTACTAAATATAAAGATAGACTAGATGTTACGAG ATGCTTGTTACTTGAAAATGCGGATTCCTATCATTAAAGAACAAAATGTGCTGTTAACAAAAAATAATGTATTAGGACAT ATAGTAAGGTATGGAATTTATAAGGCCTCAGGCTAATCACCTCAAAATTTAAGGTTGGCTTCCCAAACATAATAATGCCT TCTTTACAAAGCTCAAGTCTGAGACATAAAAGACTATATCCTCCTAGGTGCTTTTTGTAACAATATAGATTGTGCTGCCT ATGACAGTGGTGAATATATTGGAAACGTATTGAGTTAGCTGCTGTATAATTTTACTTTTAATATGGAATATAATTGTCTT TTTACTGCATCTCATTCCCTTTCTATTCCTCATGCAGGACATGAAGCGGCAATGTGATGAGAAAAGGTTTGCACTGACAA AATTTGTATTGTTCTTCTTGACATCATTTGGTTGTTTCCTAAATCTATGCTATTGCTTTCAGAGACGTATATGAATATAT GATTGCCCAACAGAAAGAGAAAGGAAGGTCAAAAAGTGGTAAAGGTGAAAGTATCACTTTACAGCAGTTGCAAGCAGCTC ATGATGAATATAAAGAGGAAGCAACACTTTGTGCTTTTCGGTTAAAATCCTTGAAGCAAGGCCAGTCACGCAGTCTCCTA ACACAAGCAGCTCGTCACTATGCTGCGCAGGTTTAGTTAAACTTATGGCCTATCTCTTTTAAATCTTCTATCCTTTTTTT CAACCTAGTCTTGATGAATCTTTCTTGTCCTGCTTTAAATATAGTTGAACTTCTTTCGGAAGGGACTTAAATCACTGGAG GCTGTTGAGCCACATGTCAGAATGGTTGCAGGACACCAACATATTGATTACCAATTTAGTGGCCTTGAAGATGATGACGG TGAAGATTGTTCTGAAGATGCTGGGAATGACGATGAGATCGTTGAAGGCACTGAGTTAAGTTTTAACTACAGATCAAATA AGCAAGGGCCTTATACTGCTTCCACATCGCCAAACTCAGCAGAGGTAGGAATTTGACATTTCTCAAAACTTGTATGGTTT TTAATGCCTAGGTTCATATGGAATTTTCTTATGCTTATTGCTTGACTTGTTTTCTGAAAAAATTGCGCACAAGGATGCTA CTATTTTATTTTTATACGTGTTTAAATCTATAATCTATGCCTTGCTCCAGCATCAAATGCTTGCTACCGTTATTTATTTT TTCAGAATCCAAGTTATTATGTCATCTTATCATAATCATTGGTGGTGCATTGCCAGGTGGAAGAATCAAGACTGTCATAT GTTCGAGCCTCGACCGCAGAAACTGCAGAGGTGTTATTCATTACTACTTTTCATTAAATCAATGTGAAAATCTCATTTAA ATCTTAGTTGCAAAGGAAATCCAGCCATAGAAGCTCCTCAATCTCCCCTAAGACAAATAAATATCACAAATTAAATTATA TAATTGTTAGAACTTAGAAGTCCCACATTGGCTAGAGATATGGCATAGATAGCCTTTATAAAGTGTAGAGCAACCCTCAA TTTTTGAGCTAGCTTTTGGGTTGAGTTAGGCCTCCCAAATTCTAATAGTAAAAATAATAACGTATTACAAAAGATCTTAC TTAATCTTTATAAGCGCAGAAAGTATCATTTGGGACATAATTTAAGGATATTGGTTTAGCTTTATGAAAATGACTACTTC AATTCTCATTTTGCATTGGTCTAACTGGTCCTTAATTGAAACAGATTCTTTAATTTGATTTAGGTCATTCTCTAATACTT CTGTTAACTTGCCTTCTGACAGATAGATAAGAACCAAGGAGATTTTAAATTCTCAACTAGAGATCGTAGAGTCAGCAGCT ATTCAGCTCCAATATTTGCTGAAAAGAAATTTGACCCAGCTGAGAAAGTAAGATTACTTTTGTCATCATCTGCAGCAAAG CCTAATGCTTATGTACTTCCTACCCCTGTCAACATCAAAGAAACAAAAACTAGCTCAGCCCCCCGCCTAAGTGCAAGTGG ATCTTCACATAATTTGTGGCATTCTTCCCCTTTGGATGAAAAAAAAAACGAGAAAGATCTTGTTGATGGTAAATTGTCAG AACCAGCCATCCCTAGAGCTCACTCTATTCTCAAAGAAAGCAACAGTGATAACACATCCATCCAGTTACCACGCCCTTCA GCTGAGGGACTGTCACTTCCACAATTTGATATTTTCAATGCTTCTGATAGTAAGAAAACATTAAGACAAGCTTTTTCAGG TCCATTGACTAATAAACCACTGTCAGTAAAACCTGTTTCAGGGGCTTTTCCACGTTTACCAATGCCCCAGCCTACCTCTC CAAAAGCATCTCCTGGTACTTCACCTCCCCCTGTTTCCTCACCTAGGATAAGTGAGTTACATGAGCTTCCTAGACCTCCT GGTGATCAATCCAGCAAGCCAATGAAATCTTCTCGCGTAGGCCACTCCGCTCCATTAGTATTCAGAAATCCAGATCATCC CGCAGCTAATAAGTTTCCTTCAGTTGTATCGAGTGGAGCATCTCCACTTCCAACTCCACCTATAATGGTCTCTCGGAGTT TTTCTATACCCTCAAGTAATCAGAGAGCTATGGCATTGAATGTTACTAATACTAAGTATTTGGATACACGCCAAATTCCA GAGAAAGTTGAAGTAGCTGCATCACCTCCGCTAACACCTATATCACAGAGAGCATCAAGTATATCTGACCTGGCTACTCA CTCTAGTGAAATCCAAGGTAAGATTCTATTTCTTGTAGTTCAATTTTGTATGAATTTGGGTATGCTTTCCAGTCTTTAGC TACTTGTCCTGTTGTCCTTTTCTATATTGAATGGCGGAACCAACTTATTGAGTAATATACATTGCTAGCTTGGATTAGGA CATGTCAGGGTCTAACCTGTGAGTTCTGGAGCATGTGCTACTTCTGAAACTCAAACAGTATATTTGTGGCAACAAAACAT CAGCTAAATATAAATATGATATAATCATAAGTTTCCTTAGATAGTAGTGGTGGAAAATGCAGTCTGTTTGTCATTCAACT GAAGTTTATAGCCCTGTTTATTAGTTAAAGCATAACTTATGTTTCTTTCATGTAGTTAGTGTTGTACCTCCTCTGTTTTA TGGTCTTACTATTGAATCCAACCTAGGTGCATTTTCCTCTGCTCTATGTCCATGGTTTGTATTCAAGACCATTTCTTGCT ATTCCCTAGAGATGCTTTTAATAGCTGCAAGTGGCATTGTCCTTGTTGACTATGAATACCTGCAATGCTCTGTAGATAGA AGTTAAACATTAATCTGGTAATAGAACTACCCAATGAAATAGTGAAATCTACATATATTTAAAAATGATAATAATGCATG GGAGCAAAGATTTATTGCCATTCTTGGGAAATGCTTTAATTTGGAATCTTTGTCTTGGGTCTTTTTGACTGTACCTCATT TAGTGTATTGATAAACTCTTTCAAATTTAGTTGTCACAGATTTTCAAAATTAATAATGTTCCTTAGAACTTCTCCTTAAT TTCTTTTCTTGAATTTGCATAACTGAAGAACAAGGTTTCTGTTGAGTTCCAGTCATTCATTGCCAATCATGGGGTCTAGC AAAATTTGTGTTTTGCATCAAGCCATCAAGAATGTTTTACTTATTCTCGTTGTGGTTCACCTTGTCATCTTCATCTTGGT GTGAAAATGTGAGTACGAGGTTTTTCAGTGAATGCAGGTAGGAGCTAAATCCTATGCTTGTGGCTGAGTTTCGGTGAATG ATTTTGAGTGTTTTTATTCTTGTGGGAGCTAAATCACTTGCATTGTGGAGTCCTAGGGTTTTGCCCAAGAGAAAGGTTCA GAGAAGTATATGTAAATATGCTATGTATTGTTTAGCCTCTCATCTCAATTTGTATCTATTATTTTTACTTTAATTAGTGT CGATGGGAACTAAACTTTACATGATTTCATTTTTATAAATGTGTTGTGTATTATTAGTGTATATATACCGGGATGAATTT TTTTGTTTACTTACCCTAGTCAAACCAACATGAACCCCTTCTATTTTGTCGACTATGAAAGCAAAGATAGAAACAAAATG AGACACCCTCTCACTTTTCCCATTTCCACCCTTTTTCTAATGGCCATCAGATTGCACTAGATTTTTCATCTAGATGGAAC TGGAACTTATTTTCCCTTGATGTGGCTACTGACTTCATTAGAAATTAGAGAAATATTGGTTGTTAGTAGGAAAGATGGTT TCTACAAACTTAACGTGACGCTATTATCTACATTCACCCTTTACGCTTTCCTTAATGTATTGTTACCTGGCAACCTGATT AATTAATTGCCTTTTCCTTTATTTTTTTTGTACAGATATTTTTCGTAATAGTCACTCTTATTATTGTTGTCAAAGCAATG TTCGGGAGTTCCTCTATTCAATCCTTTTCCTTCTTCTTGTTGCTGGATATCTCGTTCGTACACATCTTCTCTTTGTTTCT CGAGTCTATAGTGAGTTACAGACAGAGTTCGAAAAGGTCAAATCTTTGATGATTCCATCATACATGATTGAGTTGCGAAA ACTTCTGGATAGGTATCCTACATCTGAACAGAATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTACCCTGGAACAATTAG GAAATTCTCTAGAAGAAATACGAAGTTCTGCTTCTGGCGGCAACATGCTATGGGGTGGTGGTTCCGCTTATGGGGTCAAA TCAATACGTTCTAAGAAGAAATATTTGAATCTCATCGATCTCATAAGTAATATTGCATTATTCCGAGAGAAATACTATGA ATATTCACTTTCACACTTTTTTCCCTAACGTTCTATTTTATTGGTTAAAATTCTAATAGGTTTCACTAAATTGGGAATGT GGCATATATAATTTAGTGGGTCCTATGTGAAATTTTAC
CDS sequence (LotjaGi1g1v0629500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTCCTCGCTCAGCAAGTTGAGGAAAATTGCACTTCACAAGAGCACCGTTGCCAAAGAAAAGAACGAGTTTCAACC TTCACCCGTCTTCGACGAGCTTGCTCTCGCTGCCAAGGACATGCAAGAGATGAGAGATTGCTATGATAGCCTGCTTGCTG CGGCTGCTGCTACGGAAAACAGTGCTTACGAATTTGCTGAGTCACTGCAGGAAATGGGTACTTGTCTATTGGAGAAAACT TCCTTAAATGATGATGAAGAAAATGGTAAAGTTTTGGGGATGCTTGGAAATGTGCAGCTTGAACTTCAGAAACTTGTTGA TAGCTATCGTTCTCACGTAGCACTCACAATAACCAAACCATCAGAGTCTCTGCTTAATGAACTAAGAACTGTTGAGGACA TGAAGCGGCAATGTGATGAGAAAAGAGACGTATATGAATATATGATTGCCCAACAGAAAGAGAAAGGAAGGTCAAAAAGT GGTAAAGGTGAAAGTATCACTTTACAGCAGTTGCAAGCAGCTCATGATGAATATAAAGAGGAAGCAACACTTTGTGCTTT TCGGTTAAAATCCTTGAAGCAAGGCCAGTCACGCAGTCTCCTAACACAAGCAGCTCGTCACTATGCTGCGCAGTTGAACT TCTTTCGGAAGGGACTTAAATCACTGGAGGCTGTTGAGCCACATGTCAGAATGGTTGCAGGACACCAACATATTGATTAC CAATTTAGTGGCCTTGAAGATGATGACGGTGAAGATTGTTCTGAAGATGCTGGGAATGACGATGAGATCGTTGAAGGCAC TGAGTTAAGTTTTAACTACAGATCAAATAAGCAAGGGCCTTATACTGCTTCCACATCGCCAAACTCAGCAGAGGTGGAAG AATCAAGACTGTCATATGTTCGAGCCTCGACCGCAGAAACTGCAGAGATAGATAAGAACCAAGGAGATTTTAAATTCTCA ACTAGAGATCGTAGAGTCAGCAGCTATTCAGCTCCAATATTTGCTGAAAAGAAATTTGACCCAGCTGAGAAAGTAAGATT ACTTTTGTCATCATCTGCAGCAAAGCCTAATGCTTATGTACTTCCTACCCCTGTCAACATCAAAGAAACAAAAACTAGCT CAGCCCCCCGCCTAAGTGCAAGTGGATCTTCACATAATTTGTGGCATTCTTCCCCTTTGGATGAAAAAAAAAACGAGAAA GATCTTGTTGATGGTAAATTGTCAGAACCAGCCATCCCTAGAGCTCACTCTATTCTCAAAGAAAGCAACAGTGATAACAC ATCCATCCAGTTACCACGCCCTTCAGCTGAGGGACTGTCACTTCCACAATTTGATATTTTCAATGCTTCTGATAGTAAGA AAACATTAAGACAAGCTTTTTCAGGTCCATTGACTAATAAACCACTGTCAGTAAAACCTGTTTCAGGGGCTTTTCCACGT TTACCAATGCCCCAGCCTACCTCTCCAAAAGCATCTCCTGGTACTTCACCTCCCCCTGTTTCCTCACCTAGGATAAGTGA GTTACATGAGCTTCCTAGACCTCCTGGTGATCAATCCAGCAAGCCAATGAAATCTTCTCGCGTAGGCCACTCCGCTCCAT TAGTATTCAGAAATCCAGATCATCCCGCAGCTAATAAGTTTCCTTCAGTTGTATCGAGTGGAGCATCTCCACTTCCAACT CCACCTATAATGGTCTCTCGGAGTTTTTCTATACCCTCAAGTAATCAGAGAGCTATGGCATTGAATGTTACTAATACTAA GTATTTGGATACACGCCAAATTCCAGAGAAAGTTGAAGTAGCTGCATCACCTCCGCTAACACCTATATCACAGAGAGCAT CAAGTATATCTGACCTGGCTACTCACTCTAGTGAAATCCAAGTGAATGCAGGTAGGAGCTAA
Protein sequence (LotjaGi1g1v0629500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSSLSKLRKIALHKSTVAKEKNEFQPSPVFDELALAAKDMQEMRDCYDSLLAAAAATENSAYEFAESLQEMGTCLLEKT SLNDDEENGKVLGMLGNVQLELQKLVDSYRSHVALTITKPSESLLNELRTVEDMKRQCDEKRDVYEYMIAQQKEKGRSKS GKGESITLQQLQAAHDEYKEEATLCAFRLKSLKQGQSRSLLTQAARHYAAQLNFFRKGLKSLEAVEPHVRMVAGHQHIDY QFSGLEDDDGEDCSEDAGNDDEIVEGTELSFNYRSNKQGPYTASTSPNSAEVEESRLSYVRASTAETAEIDKNQGDFKFS TRDRRVSSYSAPIFAEKKFDPAEKVRLLLSSSAAKPNAYVLPTPVNIKETKTSSAPRLSASGSSHNLWHSSPLDEKKNEK DLVDGKLSEPAIPRAHSILKESNSDNTSIQLPRPSAEGLSLPQFDIFNASDSKKTLRQAFSGPLTNKPLSVKPVSGAFPR LPMPQPTSPKASPGTSPPPVSSPRISELHELPRPPGDQSSKPMKSSRVGHSAPLVFRNPDHPAANKFPSVVSSGASPLPT PPIMVSRSFSIPSSNQRAMALNVTNTKYLDTRQIPEKVEVAASPPLTPISQRASSISDLATHSSEIQVNAGRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 623 | 623 | 4.8E-274 | ||
| PANTHER | 1 | 623 | 623 | 4.8E-274 | – | |
| Gene3D | 30 | 242 | 213 | 7.2E-23 | ||
| SUPERFAMILY | 32 | 230 | 199 | 2.09E-24 | ||
| CDD | 40 | 228 | 189 | 2.44154E-26 | – | |
| Pfam | 54 | 228 | 175 | 2.5E-9 | ||
| MobiDBLite | 273 | 292 | 20 | - | – | |
| MobiDBLite | 370 | 403 | 34 | - | – | |
| MobiDBLite | 370 | 389 | 20 | - | – | |
| MobiDBLite | 416 | 437 | 22 | - | – | |
| MobiDBLite | 419 | 434 | 16 | - | – | |
| MobiDBLite | 461 | 554 | 94 | - | – | |
| MobiDBLite | 479 | 500 | 22 | - | – | |
| MobiDBLite | 605 | 633 | 29 | - | – | |
| MobiDBLite | 607 | 633 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
Expression pattern of LotjaGi1g1v0629500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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