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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0629500 |
| Transcript ID | LotjaGi1g1v0629500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Hydroxyproline-rich glycoprotein family protein; TAIR: AT2G33490.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|O22799|Y2349_ARATH Uncharacterized protein At2g33490; TrEMBL-Plants: tr|A0A0L9U6Q1|A0A0L9U6Q1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0629500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:118077060..118084192) extracted from Lotus japonicus Gifu genome v1.2.
ATTCATTCCCACAGCACTTTCTTTCCTCCTTCCTTCGATTCTCCGCTGAGATTCCCTCAATTCCCTCGCCCCTTCTCTCT TGCCGTTTTGCGCCGTCTCACCGTCGTGTCGTCGCGGTGGAAGGAAGAAGATGAAGTCCTCGCTCAGCAAGTTGAGGAAA ATTGCACTTCACAAGAGCACCGTTGCCAAAGAAAAGAACGAGTTTCAACCTTCACCCGTCTTCGACGAGCTTGCTCTCGC TGCCAAGGTTCTCTCTCTCTCTCTCTCTAATCCCGATGTGACTGTTTCTGATTGCAGCATCGAATTGGCCTCCATTGAAA TCAATGTTTCAATTTCAAGATTTGATTTCAGTTTTATGGGTTTTGCTCTTATCATCATCCGAATCATGCTTGGTTCACAT GAAGTTCATGTTTGTGCTACGATTTTTCTTAATTTGTTTTGGGGGAAAATTAGCTTTAGCCTTTAGCTCATTAGCTGTGA ATCTTATTGTTCTAGAGTTAACACGAGGATAATTGTGTTTCGAATGAAAATAATTGGTCCTTTGGGTTCTTGCTTGTGCG GTTGCGCCGAATTAATGGTGTCATAGTTGTATTACAGGCTTAGGAGGTGAAAATTTGAGTGTGGTAATGGGGAGTTGGTG AGAAATGTGTGATAATTTGGTGCCCATTTTCTTATATATGGCTTACTTATTGTAGTGGCGTTACGGGTTTCCTTTGCCAT TTCGCAGGACATGCAAGAGATGAGAGATTGCTATGATAGCCTGCTTGCTGCGGCTGCTGCTACGGAAAACAGTGCTTACG GTAAATATTAGTCTTTGACCCTCAGCTGGTAGCTCATCTTGTTCCCTTTTGTCCCCCTCGCATATAACATCAGAACTTAG GAGCTAGATGTGCATTTTTTTTTATCCGAATCCTCCCTCATGTATGTCTCAAAAAATGTAAGGCATAAATTATATGTGCA ATATATACAATGCCTCCACCAATTTGAGGCACGGATTTACTTTTCTAATTGCCATTGGCCAATAGTTGGTAATCCACGAC CGGCATGGTCTTATGCACTATCAATAAGGTTAGGTAATGATCAGTATTGCTATCCAAAGTACCTGAAAGTTGAAAACAGC TCTTGATGCTGAACTTGCACTCTTGCCTTGGGAAATCCTTCTTCTTATTATTGAAATTGTGTGTTGTGACTACCTTTAAA ATGTAGTGAGATAGTAGCATAAACATATCTGAAAATATCTCAGTCTTCTCTCCAGGGTATCCTTTTTCGTACCGTACCAC CACACTATACTTTCAATATTGATCATTAGACAAACATTTAGCATTTGTTTAGTGAGGAATGCTAACAGAACACTATTTTT AAAATACTCTTCAACACAGTCTGTGTTATTGGTCCATTCTTGAAAAGTTCATTTGGTTTCCTCATCAATAGATTATTTCT AAAAGAGTGTGTTGACTTCATACAAAATAGACCAATAATGGAAAGTGTGTTGCTAGCATTTGTCTAGTTAGCTTCTTTTT TTTTTTGGGGATCAACTTTACTGCCTTGAAAATGCTAAAGTCTCTTGGGCATCCTTTCTCATGTTTGTGTATTCCAGAAT TTGCTGAGTCACTGCAGGAAATGGGTACTTGTCTATTGGAGAAAACTTCCTTAAATGATGATGAAGAAAATGGTGAGTGG GTAAACATTTCATGACTGCCCTATCTAAGTTACTTAGCATTTAAATCATGTTGCTACAGTTATTATGAACTGAGTGCAGG TAAAGTTTTGGGGATGCTTGGAAATGTGCAGCTTGAACTTCAGAAACTTGTTGATAGCTATGTAAGCCTTCGTTTGGATG AAACCTTTTAATTGCTTTGTTCTTTAAGCATAGTTCATTTGCAAAACATTCATTATGGTTTTCCTTTCTGTTCCTCAGCG TTCTCACGTAGCACTCACAATAACCAAACCATCAGAGTCTCTGCTTAATGAACTAAGAACTGTTGAGGTATGTTTATGTA CTTTTCTTTTTTATCAAATTTAATTATTTAAAGCATACCCAACAGGGTCTGGGTCTGCGTGGTAAAAGCAGACGTGGTCT TTCATTGTTTCTCACTTTTCTCTCATTTAATTCTTATCAGTATTTCACTTTAATAATTAATATTTTTAATCGTATAAAAT ATCCTTAAATGAATTTAAAGTTTGTAAACTTCAACTCCTTATTAATTCTTTGACTAATGCTTTCCCAATTCAATTTTACT AAATATAAAGATAGACTAGATGTTACGAGATGCTTGTTACTTGAAAATGCGGATTCCTATCATTAAAGAACAAAATGTGC TGTTAACAAAAAATAATGTATTAGGACATATAGTAAGGTATGGAATTTATAAGGCCTCAGGCTAATCACCTCAAAATTTA AGGTTGGCTTCCCAAACATAATAATGCCTTCTTTACAAAGCTCAAGTCTGAGACATAAAAGACTATATCCTCCTAGGTGC TTTTTGTAACAATATAGATTGTGCTGCCTATGACAGTGGTGAATATATTGGAAACGTATTGAGTTAGCTGCTGTATAATT TTACTTTTAATATGGAATATAATTGTCTTTTTACTGCATCTCATTCCCTTTCTATTCCTCATGCAGGACATGAAGCGGCA ATGTGATGAGAAAAGGTTTGCACTGACAAAATTTGTATTGTTCTTCTTGACATCATTTGGTTGTTTCCTAAATCTATGCT ATTGCTTTCAGAGACGTATATGAATATATGATTGCCCAACAGAAAGAGAAAGGAAGGTCAAAAAGTGGTAAAGGTGAAAG TATCACTTTACAGCAGTTGCAAGCAGCTCATGATGAATATAAAGAGGAAGCAACACTTTGTGCTTTTCGGTTAAAATCCT TGAAGCAAGGCCAGTCACGCAGTCTCCTAACACAAGCAGCTCGTCACTATGCTGCGCAGGTTTAGTTAAACTTATGGCCT ATCTCTTTTAAATCTTCTATCCTTTTTTTCAACCTAGTCTTGATGAATCTTTCTTGTCCTGCTTTAAATATAGTTGAACT TCTTTCGGAAGGGACTTAAATCACTGGAGGCTGTTGAGCCACATGTCAGAATGGTTGCAGGACACCAACATATTGATTAC CAATTTAGTGGCCTTGAAGATGATGACGGTGAAGATTGTTCTGAAGATGCTGGGAATGACGATGAGATCGTTGAAGGCAC TGAGTTAAGTTTTAACTACAGATCAAATAAGCAAGGGCCTTATACTGCTTCCACATCGCCAAACTCAGCAGAGGTAGGAA TTTGACATTTCTCAAAACTTGTATGGTTTTTAATGCCTAGGTTCATATGGAATTTTCTTATGCTTATTGCTTGACTTGTT TTCTGAAAAAATTGCGCACAAGGATGCTACTATTTTATTTTTATACGTGTTTAAATCTATAATCTATGCCTTGCTCCAGC ATCAAATGCTTGCTACCGTTATTTATTTTTTCAGAATCCAAGTTATTATGTCATCTTATCATAATCATTGGTGGTGCATT GCCAGGTGGAAGAATCAAGACTGTCATATGTTCGAGCCTCGACCGCAGAAACTGCAGAGGTGTTATTCATTACTACTTTT CATTAAATCAATGTGAAAATCTCATTTAAATCTTAGTTGCAAAGGAAATCCAGCCATAGAAGCTCCTCAATCTCCCCTAA GACAAATAAATATCACAAATTAAATTATATAATTGTTAGAACTTAGAAGTCCCACATTGGCTAGAGATATGGCATAGATA GCCTTTATAAAGTGTAGAGCAACCCTCAATTTTTGAGCTAGCTTTTGGGTTGAGTTAGGCCTCCCAAATTCTAATAGTAA AAATAATAACGTATTACAAAAGATCTTACTTAATCTTTATAAGCGCAGAAAGTATCATTTGGGACATAATTTAAGGATAT TGGTTTAGCTTTATGAAAATGACTACTTCAATTCTCATTTTGCATTGGTCTAACTGGTCCTTAATTGAAACAGATTCTTT AATTTGATTTAGGTCATTCTCTAATACTTCTGTTAACTTGCCTTCTGACAGATAGATAAGAACCAAGGAGATTTTAAATT CTCAACTAGAGATCGTAGAGTCAGCAGCTATTCAGCTCCAATATTTGCTGAAAAGAAATTTGACCCAGCTGAGAAAGTAA GATTACTTTTGTCATCATCTGCAGCAAAGCCTAATGCTTATGTACTTCCTACCCCTGTCAACATCAAAGAAACAAAAACT AGCTCAGCCCCCCGCCTAAGTGCAAGTGGATCTTCACATAATTTGTGGCATTCTTCCCCTTTGGATGAAAAAAAAAACGA GAAAGATCTTGTTGATGGTAAATTGTCAGAACCAGCCATCCCTAGAGCTCACTCTATTCTCAAAGAAAGCAACAGTGATA ACACATCCATCCAGTTACCACGCCCTTCAGCTGAGGGACTGTCACTTCCACAATTTGATATTTTCAATGCTTCTGATAGT AAGAAAACATTAAGACAAGCTTTTTCAGGTCCATTGACTAATAAACCACTGTCAGTAAAACCTGTTTCAGGGGCTTTTCC ACGTTTACCAATGCCCCAGCCTACCTCTCCAAAAGCATCTCCTGGTACTTCACCTCCCCCTGTTTCCTCACCTAGGATAA GTGAGTTACATGAGCTTCCTAGACCTCCTGGTGATCAATCCAGCAAGCCAATGAAATCTTCTCGCGTAGGCCACTCCGCT CCATTAGTATTCAGAAATCCAGATCATCCCGCAGCTAATAAGTTTCCTTCAGTTGTATCGAGTGGAGCATCTCCACTTCC AACTCCACCTATAATGGTCTCTCGGAGTTTTTCTATACCCTCAAGTAATCAGAGAGCTATGGCATTGAATGTTACTAATA CTAAGTATTTGGATACACGCCAAATTCCAGAGAAAGTTGAAGTAGCTGCATCACCTCCGCTAACACCTATATCACAGAGA GCATCAAGTATATCTGACCTGGCTACTCACTCTAGTGAAATCCAAGGTAAGATTCTATTTCTTGTAGTTCAATTTTGTAT GAATTTGGGTATGCTTTCCAGTCTTTAGCTACTTGTCCTGTTGTCCTTTTCTATATTGAATGGCGGAACCAACTTATTGA GTAATATACATTGCTAGCTTGGATTAGGACATGTCAGGGTCTAACCTGTGAGTTCTGGAGCATGTGCTACTTCTGAAACT CAAACAGTATATTTGTGGCAACAAAACATCAGCTAAATATAAATATGATATAATCATAAGTTTCCTTAGATAGTAGTGGT GGAAAATGCAGTCTGTTTGTCATTCAACTGAAGTTTATAGCCCTGTTTATTAGTTAAAGCATAACTTATGTTTCTTTCAT GTAGTTAGTGTTGTACCTCCTCTGTTTTATGGTCTTACTATTGAATCCAACCTAGGTGCATTTTCCTCTGCTCTATGTCC ATGGTTTGTATTCAAGACCATTTCTTGCTATTCCCTAGAGATGCTTTTAATAGCTGCAAGTGGCATTGTCCTTGTTGACT ATGAATACCTGCAATGCTCTGTAGATAGAAGTTAAACATTAATCTGGTAATAGAACTACCCAATGAAATAGTGAAATCTA CATATATTTAAAAATGATAATAATGCATGGGAGCAAAGATTTATTGCCATTCTTGGGAAATGCTTTAATTTGGAATCTTT GTCTTGGGTCTTTTTGACTGTACCTCATTTAGTGTATTGATAAACTCTTTCAAATTTAGTTGTCACAGATTTTCAAAATT AATAATGTTCCTTAGAACTTCTCCTTAATTTCTTTTCTTGAATTTGCATAACTGAAGAACAAGGTTTCTGTTGAGTTCCA GTCATTCATTGCCAATCATGGGGTCTAGCAAAATTTGTGTTTTGCATCAAGCCATCAAGAATGTTTTACTTATTCTCGTT GTGGTTCACCTTGTCATCTTCATCTTGGTGTGAAAATGTGAGTACGAGGTTTTTCAGTGAATGCAGGTAGGAGCTAAATC CTATGCTTGTGGCTGAGTTTCGGTGAATGATTTTGAGTGTTTTTATTCTTGTGGGAGCTAAATCACTTGCATTGTGGAGT CCTAGGGTTTTGCCCAAGAGAAAGGTTCAGAGAAGTATATGTAAATATGCTATGTATTGTTTAGCCTCTCATCTCAATTT GTATCTATTATTTTTACTTTAATTAGTGTCGATGGGAACTAAACTTTACATGATTTCATTTTTATAAATGTGTTGTGTAT TATTAGTGTATATATACCGGGATGAATTTTTTTGTTTACTTACCCTAGTCAAACCAACATGAACCCCTTCTATTTTGTCG ACTATGAAAGCAAAGATAGAAACAAAATGAGACACCCTCTCACTTTTCCCATTTCCACCCTTTTTCTAATGGCCATCAGA TTGCACTAGATTTTTCATCTAGATGGAACTGGAACTTATTTTCCCTTGATGTGGCTACTGACTTCATTAGAAATTAGAGA AATATTGGTTGTTAGTAGGAAAGATGGTTTCTACAAACTTAACGTGACGCTATTATCTACATTCACCCTTTACGCTTTCC TTAATGTATTGTTACCTGGCAACCTGATTAATTAATTGCCTTTTCCTTTATTTTTTTTGTACAGATATTTTTCGTAATAG TCACTCTTATTATTGTTGTCAAAGCAATGTTCGGGAGTTCCTCTATTCAATCCTTTTCCTTCTTCTTGTTGCTGGATATC TCGTTCGTACACATCTTCTCTTTGTTTCTCGAGTCTATAGTGAGTTACAGACAGAGTTCGAAAAGGTCAAATCTTTGATG ATTCCATCATACATGATTGAGTTGCGAAAACTTCTGGATAGGTATCCTACATCTGAACAGAATTCTTTCTGGTTAAAGAA TCTCTTTCTAGTTACCCTGGAACAATTAGGAAATTCTCTAGAAGAAATACGAAGTTCTGCTTCTGGCGGCAACATGCTAT GGGGTGGTGGTTCCGCTTATGGGGTCAAATCAATACGTTCTAAGAAGAAATATTTGAATCTCATCGATCTCATAAGTAAT ATTGCATTATTCCGAGAGAAATACTATGAATATTCACTTTCACACTTTTTTCCCTAACGTTCTATTTTATTGGTTAAAAT TCTAATAGGTTTC
CDS sequence (LotjaGi1g1v0629500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTCCTCGCTCAGCAAGTTGAGGAAAATTGCACTTCACAAGAGCACCGTTGCCAAAGAAAAGAACGAGTTTCAACC TTCACCCGTCTTCGACGAGCTTGCTCTCGCTGCCAAGGACATGCAAGAGATGAGAGATTGCTATGATAGCCTGCTTGCTG CGGCTGCTGCTACGGAAAACAGTGCTTACGAATTTGCTGAGTCACTGCAGGAAATGGGTACTTGTCTATTGGAGAAAACT TCCTTAAATGATGATGAAGAAAATGGTAAAGTTTTGGGGATGCTTGGAAATGTGCAGCTTGAACTTCAGAAACTTGTTGA TAGCTATCGTTCTCACGTAGCACTCACAATAACCAAACCATCAGAGTCTCTGCTTAATGAACTAAGAACTGTTGAGGACA TGAAGCGGCAATGTGATGAGAAAAGAGACGTATATGAATATATGATTGCCCAACAGAAAGAGAAAGGAAGGTCAAAAAGT GGTAAAGGTGAAAGTATCACTTTACAGCAGTTGCAAGCAGCTCATGATGAATATAAAGAGGAAGCAACACTTTGTGCTTT TCGGTTAAAATCCTTGAAGCAAGGCCAGTCACGCAGTCTCCTAACACAAGCAGCTCGTCACTATGCTGCGCAGTTGAACT TCTTTCGGAAGGGACTTAAATCACTGGAGGCTGTTGAGCCACATGTCAGAATGGTTGCAGGACACCAACATATTGATTAC CAATTTAGTGGCCTTGAAGATGATGACGGTGAAGATTGTTCTGAAGATGCTGGGAATGACGATGAGATCGTTGAAGGCAC TGAGTTAAGTTTTAACTACAGATCAAATAAGCAAGGGCCTTATACTGCTTCCACATCGCCAAACTCAGCAGAGGTGGAAG AATCAAGACTGTCATATGTTCGAGCCTCGACCGCAGAAACTGCAGAGATAGATAAGAACCAAGGAGATTTTAAATTCTCA ACTAGAGATCGTAGAGTCAGCAGCTATTCAGCTCCAATATTTGCTGAAAAGAAATTTGACCCAGCTGAGAAAGTAAGATT ACTTTTGTCATCATCTGCAGCAAAGCCTAATGCTTATGTACTTCCTACCCCTGTCAACATCAAAGAAACAAAAACTAGCT CAGCCCCCCGCCTAAGTGCAAGTGGATCTTCACATAATTTGTGGCATTCTTCCCCTTTGGATGAAAAAAAAAACGAGAAA GATCTTGTTGATGGTAAATTGTCAGAACCAGCCATCCCTAGAGCTCACTCTATTCTCAAAGAAAGCAACAGTGATAACAC ATCCATCCAGTTACCACGCCCTTCAGCTGAGGGACTGTCACTTCCACAATTTGATATTTTCAATGCTTCTGATAGTAAGA AAACATTAAGACAAGCTTTTTCAGGTCCATTGACTAATAAACCACTGTCAGTAAAACCTGTTTCAGGGGCTTTTCCACGT TTACCAATGCCCCAGCCTACCTCTCCAAAAGCATCTCCTGGTACTTCACCTCCCCCTGTTTCCTCACCTAGGATAAGTGA GTTACATGAGCTTCCTAGACCTCCTGGTGATCAATCCAGCAAGCCAATGAAATCTTCTCGCGTAGGCCACTCCGCTCCAT TAGTATTCAGAAATCCAGATCATCCCGCAGCTAATAAGTTTCCTTCAGTTGTATCGAGTGGAGCATCTCCACTTCCAACT CCACCTATAATGGTCTCTCGGAGTTTTTCTATACCCTCAAGTAATCAGAGAGCTATGGCATTGAATGTTACTAATACTAA GTATTTGGATACACGCCAAATTCCAGAGAAAGTTGAAGTAGCTGCATCACCTCCGCTAACACCTATATCACAGAGAGCAT CAAGTATATCTGACCTGGCTACTCACTCTAGTGAAATCCAAGGTAGGAGCTAA
Protein sequence (LotjaGi1g1v0629500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSSLSKLRKIALHKSTVAKEKNEFQPSPVFDELALAAKDMQEMRDCYDSLLAAAAATENSAYEFAESLQEMGTCLLEKT SLNDDEENGKVLGMLGNVQLELQKLVDSYRSHVALTITKPSESLLNELRTVEDMKRQCDEKRDVYEYMIAQQKEKGRSKS GKGESITLQQLQAAHDEYKEEATLCAFRLKSLKQGQSRSLLTQAARHYAAQLNFFRKGLKSLEAVEPHVRMVAGHQHIDY QFSGLEDDDGEDCSEDAGNDDEIVEGTELSFNYRSNKQGPYTASTSPNSAEVEESRLSYVRASTAETAEIDKNQGDFKFS TRDRRVSSYSAPIFAEKKFDPAEKVRLLLSSSAAKPNAYVLPTPVNIKETKTSSAPRLSASGSSHNLWHSSPLDEKKNEK DLVDGKLSEPAIPRAHSILKESNSDNTSIQLPRPSAEGLSLPQFDIFNASDSKKTLRQAFSGPLTNKPLSVKPVSGAFPR LPMPQPTSPKASPGTSPPPVSSPRISELHELPRPPGDQSSKPMKSSRVGHSAPLVFRNPDHPAANKFPSVVSSGASPLPT PPIMVSRSFSIPSSNQRAMALNVTNTKYLDTRQIPEKVEVAASPPLTPISQRASSISDLATHSSEIQGRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 623 | 623 | 4.9E-274 | ||
| PANTHER | 1 | 623 | 623 | 4.9E-274 | – | |
| Gene3D | 30 | 242 | 213 | 7.1E-23 | ||
| SUPERFAMILY | 32 | 230 | 199 | 2.09E-24 | ||
| CDD | 40 | 228 | 189 | 2.69392E-26 | – | |
| Pfam | 54 | 228 | 175 | 2.5E-9 | ||
| MobiDBLite | 273 | 292 | 20 | - | – | |
| MobiDBLite | 370 | 389 | 20 | - | – | |
| MobiDBLite | 370 | 403 | 34 | - | – | |
| MobiDBLite | 416 | 437 | 22 | - | – | |
| MobiDBLite | 419 | 434 | 16 | - | – | |
| MobiDBLite | 461 | 554 | 94 | - | – | |
| MobiDBLite | 479 | 500 | 22 | - | – | |
| MobiDBLite | 603 | 630 | 28 | - | – | |
| MobiDBLite | 607 | 630 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
Expression pattern of LotjaGi1g1v0629500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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