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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0635600 |
| Transcript ID | LotjaGi1g1v0635600.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chitinase domain-containing protein 1; TAIR: AT4G01040.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q66IL0|CHID1_XENTR Chitinase domain-containing protein 1; TrEMBL-Plants: tr|G7K407|G7K407_MEDTR Glycoside hydrolase family 18 protein; Found in the gene: LotjaGi1g1v0635600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:119044691..119049941) extracted from Lotus japonicus Gifu genome v1.2.
CACGGGTTATTGCACTAGTAGTATTTCAATGAGTGAATGATTTTCTTACGGAATTCACTACGGTGTCGTTTCAGCTCTTG GTAAGAACTCCGGCGACATGGCGAAGAAACGAGATCACCGATCAGCCCCGAGCTCCGGCCACCGGGAAAACCGATTCCAG CCACCTTCACGGCGAAACCAACGGACTGACTCAACAGCTTCCAGTCGCAGCAAGCTCATTGCTCTCTTCATCGTGTCGTC AGTCATCGCCATCGTCGCTTACTGGTTGAGACAATCTTCGCCTTCGCAATCGAAACACAAGGAATCTTATGTGTATCAAC GAGGCCTTGTCACAACCGATGCCAATTACCAAGACATAGTCACTGTAAGTTCCACTAAGAAATGATGATAAAATTGATAA TTTTTTTGATTGAATGTGATGTTGTTTTATTTATTTTATTTGATTTTTGTTTTAGTTTCAATTTTCAGCTACCAAGTAGT GTTTACAGTTTCAAAGGGTATATTCAAAATTTGATCTTTGTTTCTAATGTTACAAGTTTACATTGAATTAGGAGAATTCA AATGTACCAGAAAATAGCTCTCACCGCCATTACACTTATCCTGTGCTTGGCTACATTACTCCCTGGTATGATTTTAACAT TTTGTGGATGAAGCTTGAGTCTGGTTCTTGACATGCAATTCTTTATGTTAATTAAGGAACCAAATCTATTTGATATAATA TGATGTTCTATTTTTTTATTGTAATATAAAATCTTATAAGAAGTCTTGTACAGCTTGTGATTTCTGAACTTGGTTTAGGA TGATATTGATAATATGAATGAAAGGACACCACTTTATACATAATAATTGGATGAGTATTTTTTTCACTTGTGGGTACTGC AATGCAGGTGTGCTCTGATTTCTAGATATATTTGAACACATGATTGCCTGATAACTTCTATCAAATTTTATACTTGAGCT CAAACTGGCTGGAAAAATCTTAATTTGTAAATAGAATAATTTGAAGATTTTTCAAAAGTAGGGAATGATTGGATAAATGA ACAGACTTGAGACTTTGGGAGAGAAGAATACTTTTGTTGTGGTAATAAATTGTATTTTTTTGGGCACATACTGATACTAC AAACCACTTCATGCTATCTACTGTCTAATATGTGTTCTTACTCTAGTAACATCTTCATAGTTTTTTTGCTTTATGTCTAT GGTGAAAAAAGTTCAATTTTCTTTTCTATCATTCTTTTCTTTACTTGTCACTCGTCCTGTTAAAGATATCTTTATGTTCA CAACTTGTGTACATCTTCAAGATTGTTAATTATGGCAGGAATTCTCGGGGTTATGAACTGGCAAAAAGGTTCAACTCAAA GTTTACACATTTGTCACCTGTCTGGTATGATTTAAAGAGGTATGTACTTCGGTCCTAACTCCTAAGTGACTTCATGAAGA AATTGAGGTATGGGGGCAGAGTTGAGATCTATCTGAACCCTCCATTTTCCAGTTTGTTAGAGCTTTCAAATTTATTTTGC AAGCATAAAAAAAATTTCTAGTAGCTTTAGATTGTAATTTCTGAAGTCTTACTTTTTATGATAATATGACCTGGGATGCC TCCCTTTGAGGAATAGGATATCCAGGGTTTTTTTGAACAGGCATCACAGCCTTAAGGATCATCAGAATATTTTCTATCGT CAAGTATATGTAATTTATGCATTTACATTGCAATGTTAGTGAATACTAATGATAGATTCTGGGGGTCATTATTTAATTAG TTTATACTATATTGCTTTGTGATTTTGCTTCATCAGTTGTTATTGCCAGCCAACAGAGTAGCTTAGTTCTAGAGGGGAGA CATAATGCAGACAGAGGATGGATCTCAGACCTTAGAAAGGCAGGAGAAGCCTTGGTACAATAAATAAGTTCTCACCTTAC TAAAATTATTTCATTTCATCAATGACAGCTGAATCCCTAGATTGAAAAAAAGAAACAGAAAAGCTATTACAGCTCTGGGA TGCATCCCCCCCCCCCCTCTGACATGCATTTTAAAATTTGGATGAGAACATATAGCTTTATTACTGTCAAACATTCCTAG TGACTTGTAACCTGCGAGGCAGGGCAGCAGGGAAGTTCATGACTTAAATATTTCTCAAAGTTGTGCCCTATTTAACTCTG ATTCCAAGTAGCAGCATCCTGACCTGTCTATTTTGGGCCGTGGACTGGCAGCAAATGTTACCTTCACAATTCCCAACGGC TAACTTTTTTTTATTATATCATTAATTAACTTTTCAGATCTAACATTTGTCTAATAGTGCTAAAATTATTGTTAATTTGT TGTGCTTTTGTTCGTATCTGGCCTCTGAACCATCCGTTTCTTTTGGTCTTTTCGTTGCATGTAGATCTTGCCAAGATTTG TTCTGGAAGCATCACCAGCAGAGCTTCTGGGAAAGAAAAAACAAAGGAACAAAGCCATTAACCTTATAGTGACAGAGTGC AAGTAAGCCTCTTATTATTTTTCTAGATGTACCTTTTAGCCGATGGCATTGTGGAAACAGAGTTATCTCTAATGTGCAAG AAAATCATCTAGCCTTTGCTTATATAATCTTCTCGTGGTCACTAATTTAGCTATTCAATATTTGACTATCTATTGGTACA ACACATATTTGGAAAGCCTCTTAGTGCCATCTGCAAATGTATACGATAATGAGCACATCATAATGTAATTCTAAACGTGG GTAAATTTTATGTGGAAATTACTGGAAAGGAATTCATGGTAAGAATATTTCTAGTTTAGGAACATGGAAACTAACCACTA AACTGGTTAATGATGTTCAACAAGTGGTTAGTAAAATTAAGTAACCACTACTTGATTGAACTAGAGTCTGTTTGTATATC CATCACCTTGGATGCAAATGGCGATTTTCCTGGATGAAGCAAATTGTTTCTTCCACATTCGATGTGTTCTTGTTAAACAG AAATATTGTTTGCCACTAATTTGTGGTGTATTACTACTTACTTCCTTTAAAGAATCTGCTGTAGAAAACCCATTACCCAT ATACTACAAGGATATCAGAAGTTGTTTTTGATTGCAAATATTCATATCCATATATGAAGCACCTCCTTTCTTGATAAAAT CGTCTCTTGTGCTGTGATTTGCTTTTCATGTGAATGTTTTTCTTCTCCAGGGAAATGGGATATGATGGTATTGTTTTAGA ATCTTGGTCAAGGTGGGCAGCCTTTGGTATCTTGCATGATCCAGACATGCGGAATTTGGTGAGCATTTATTCTGTTTAAT TTTATCAGATGCTTTTTATACATCCAGAGCTATAATATGGAACTCCACCTGGAATTCATGGACCAAGTTGTGAAGTTTTC TTCCACTATTGATTTTTTTAGACTTTAGAAGATCTAGTGATGGCTGACTGTCTGATTCCCTTCCCAAATGGAATATGGAA CACTTATTATAATTTGAGTACTACCATTACAATTTTTTTCACTTTCACCTGTAAAAAAGTTCTGTTGTGATAACTCTGTT ATCCTGTACACATGGCTATGGAGGAAAAAGAAAAGTGTACATTTATTCATTGTGTTTCATGCCAGACAAATGTATCTGTC CATTTTGTATTTGCCCACTGTAGCCGTGATATGAATCATATGATGCTTTCTTCTTTTGCAAACGCAGGCACTGCAGTTTG TACAACAGCTTGGAGATGCACTCCATTCTATAAGCTCTGAGAAAAATTCTGGGCAGCCTTTGCAGTTGGTATATGTTATA GGTCCGCCATCATCTGAGAAGCTGCAAGAGCATGACTTTGGTCCAAGAGATCTTGAGACTCTAAGTGGAGCTGTGGATGG ATTCTCGTTAATGACATACGACTTCTCTAATCCTCATAACCCTGGTCCTAATGCACCGTTGAAATGGATTCAAATTATTC TACAGCTGCTTCTTGGGACCTCTAGCAGTAGAGCCCAAAGCGTCGCCCCCAAGATACTTCTTGGCATCAACTTCTATGGA AACGATTTCTCCCTTTCAAAGGGTAGTAGTTCCTTCCTTTGTTTTCTTCCTTTTCTTCTCACTAAAGTACTGGTGGCTAA AGAATCCCAACTAGGAGTAAATATTCAGTACTCACTTAGTACTCCTGCTTTCACATACAATCAGTTATTTTTTATTTTTT TAAAAAAACTTTATAATGGGAAAACTAAATATAAAAGGGTAAGTGTCATTATTTTAATGGAAGTAGCACCTAGATTTCCC CCTCACTAGTGGGAGGAGTGGGAAGGGGACTAGGGAAAGGGATGGTTCCATCATGTCATCATTTATATTCTTTCTTTATT GCTTGAGTGAAAGTGAGGACCTTTTGATATTCTGAGATCAGCTTAGAAGACTTTCCTTTTTGGTTTTTCTGTGTAAGTAA TAAGTATACCATATAACAGCATTTTATTTTATATATTGGTGAAACTTGCAACTGCAGATTCAGGTGGCGGGGCAATTACT GGGAGGGATTACTTGGCACTTTTAGAGAAGCACAGGCCGCTTCTGCAGTGGGATAATAACAGTGGGGAGCATGTTTTCTT TTACACCGACGACAAGGGCATCAAGCATGCGGTATTCTACCCATCTTTAAAGTCGATTTCCTTGCGGTTAGAGGAAGCTC ATTCATGGGGATGTGGCATCTCAATCTGGGAAATTGGACAAGGCTTGGATTATTTTTTTGACCTTCTGTGAAAGCCCTTC GTGTACCGCTATTTATGCCCCCTTTGAATGTTTATTCATACCTGTTCTTATCCTGTATTTGAGATTGATAAAAGGGGATT TTGTTTTATCAATCTAGCTTAACGAATGCTCAGTTAGTACAGAGTAAGCCTAGAGGAAACGAAATCGAGAATAGAATTCT GATTCTGAGTGATTGAAGTGTGTGTGAGCTCTCATGAGCTCATATACATAGGTGAAGCAAAGAGCATGGATCAATCTTCA GTAAATGTCCTTTGGAGAGCATTCATGACGTGATTTGAGCTTTGAATTTAATTTCCTGTGATTCTTAAACAAGTGACTTG TTTTTTTTGGTATCTAGGTACCAGTAGGATTTGAACCTAGACTTGGGAAATTTTAATCCATCAAGTATCATTTAGGCTAT TCATACCAGGAAAAAACGAGTGACTTGTAAAAGTGAAAAGCTGTTATTTAGAAGAAGAAAAAAAAGTATTTGATGTATGA AAATATAAACATGTAACTAGCTTTTCAAATAAAAATCTTACAATTTTTATC
CDS sequence (LotjaGi1g1v0635600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAAGAAACGAGATCACCGATCAGCCCCGAGCTCCGGCCACCGGGAAAACCGATTCCAGCCACCTTCACGGCGAAA CCAACGGACTGACTCAACAGCTTCCAGTCGCAGCAAGCTCATTGCTCTCTTCATCGTGTCGTCAGTCATCGCCATCGTCG CTTACTGGTTGAGACAATCTTCGCCTTCGCAATCGAAACACAAGGAATCTTATGTGTATCAACGAGGCCTTGTCACAACC GATGCCAATTACCAAGACATAGTCACTGAGAATTCAAATGTACCAGAAAATAGCTCTCACCGCCATTACACTTATCCTGT GCTTGGCTACATTACTCCCTGGAATTCTCGGGGTTATGAACTGGCAAAAAGGTTCAACTCAAAGTTTACACATTTGTCAC CTGTCTGGTATGATTTAAAGAGCCAACAGAGTAGCTTAGTTCTAGAGGGGAGACATAATGCAGACAGAGGATGGATCTCA GACCTTAGAAAGGCAGGAGAAGCCTTGATCTTGCCAAGATTTGTTCTGGAAGCATCACCAGCAGAGCTTCTGGGAAAGAA AAAACAAAGGAACAAAGCCATTAACCTTATAGTGACAGAGTGCAAGGAAATGGGATATGATGGTATTGTTTTAGAATCTT GGTCAAGGTGGGCAGCCTTTGGTATCTTGCATGATCCAGACATGCGGAATTTGGCACTGCAGTTTGTACAACAGCTTGGA GATGCACTCCATTCTATAAGCTCTGAGAAAAATTCTGGGCAGCCTTTGCAGTTGGTATATGTTATAGGTCCGCCATCATC TGAGAAGCTGCAAGAGCATGACTTTGGTCCAAGAGATCTTGAGACTCTAAGTGGAGCTGTGGATGGATTCTCGTTAATGA CATACGACTTCTCTAATCCTCATAACCCTGGTCCTAATGCACCGTTGAAATGGATTCAAATTATTCTACAGCTGCTTCTT GGGACCTCTAGCAGTAGAGCCCAAAGCGTCGCCCCCAAGATACTTCTTGGCATCAACTTCTATGGAAACGATTTCTCCCT TTCAAAGGATTCAGGTGGCGGGGCAATTACTGGGAGGGATTACTTGGCACTTTTAGAGAAGCACAGGCCGCTTCTGCAGT GGGATAATAACAGTGGGGAGCATGTTTTCTTTTACACCGACGACAAGGGCATCAAGCATGCGGTATTCTACCCATCTTTA AAGTCGATTTCCTTGCGGTTAGAGGAAGCTCATTCATGGGGATGTGGCATCTCAATCTGGGAAATTGGACAAGGCTTGGA TTATTTTTTTGACCTTCTGTGA
Protein sequence (LotjaGi1g1v0635600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKKRDHRSAPSSGHRENRFQPPSRRNQRTDSTASSRSKLIALFIVSSVIAIVAYWLRQSSPSQSKHKESYVYQRGLVTT DANYQDIVTENSNVPENSSHRHYTYPVLGYITPWNSRGYELAKRFNSKFTHLSPVWYDLKSQQSSLVLEGRHNADRGWIS DLRKAGEALILPRFVLEASPAELLGKKKQRNKAINLIVTECKEMGYDGIVLESWSRWAAFGILHDPDMRNLALQFVQQLG DALHSISSEKNSGQPLQLVYVIGPPSSEKLQEHDFGPRDLETLSGAVDGFSLMTYDFSNPHNPGPNAPLKWIQIILQLLL GTSSSRAQSVAPKILLGINFYGNDFSLSKDSGGGAITGRDYLALLEKHRPLLQWDNNSGEHVFFYTDDKGIKHAVFYPSL KSISLRLEEAHSWGCGISIWEIGQGLDYFFDLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 39 | 39 | - | – | |
| MobiDBLite | 1 | 33 | 33 | - | – | |
| Phobius | 40 | 57 | 18 | - | – | |
| TMHMM | 40 | 57 | 18 | - | – | |
| PANTHER | 41 | 433 | 393 | 9.4E-143 | – | |
| PANTHER | 41 | 433 | 393 | 9.4E-143 | – | |
| Phobius | 58 | 433 | 376 | - | – | |
| CDD | 103 | 433 | 331 | 2.18297E-159 | – | |
| SMART | 105 | 425 | 321 | 3.8E-7 | ||
| SUPERFAMILY | 106 | 430 | 325 | 2.23E-29 | ||
| Gene3D | 107 | 431 | 325 | 2.3E-114 | – | |
| Pfam | 126 | 424 | 299 | 2.8E-15 | ||
| Gene3D | 342 | 397 | 56 | 2.3E-114 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Chitin binding | Interacting selectively and non-covalently with chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. |
Expression pattern of LotjaGi1g1v0635600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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