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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0653900 |
| Transcript ID | LotjaGi1g1v0653900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB transcription factor; TAIR: AT2G01060.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q9SJW0|PHL7_ARATH Myb family transcription factor PHL7; TrEMBL-Plants: tr|A0A151TAH9|A0A151TAH9_CAJCA Myb family transcription factor APL; Found in the gene: LotjaGi1g1v0653900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:121331742..121336469) extracted from Lotus japonicus Gifu genome v1.2.
CTCCATTCCAATAACACAATAAGAGAATCTCACCGGTCGGCCACACCTTCACTCTAGGAATCTTTCCAACTCTCCAACAA ACCAAAACGGCATCGATACCTCATAGAAACGACGACAAACACAAACACACCAAACAGAACGACACGTGTACGGGACCCAC CACCCACCTCGTTAACCACAACTCCCAATCAAAACGCCGCCGTCTGCTCATTTCAACGCTGCATTTCGTGGCGGTCCCTC CCTCTCTAAATCCCAATCATTTCCTCAAAGACAAAAAACAACCACCAATCCCCAATCTCATCACTTTTCCCGAGAAAATC ACCCAATTTTCTTTCTCAGATTCCCGGAAATTCCGAAAAACGCAGCAATTCGCACTCCGGTGAGGAAGAATCTCCTGCTT CCTCTGCCAATTCAATTCAATTCAATCTCGAACCAGGTGGTGGATTCCGAATGCTTCAATTTTCGGTTGAAGAATGACTG CTCTGATTCCGAATTCATCGATTGCATTAGATCTCTCTTCAAACCCTCATCAATCGGATTAACTTGTCCAATTTTAGGTC AATTTCCTGTTCTATTAATCTTTCCTGTTCAATTTTCGATGAATTTGATGATTTTAGTTGTTTTTTGAATGGTGTTTGAC TTGGATTTGTATTAATGTGAACTGTGAAGTTCATGGATGCTAGGTACTAGGTACTGCTAGTGTTGAATTTGTGGATTTTA TTTGTGAGATTTAGCAAAAATTGAAAATGATTGTTATTATTGTTCATTGTAAATTGTTTTCAGTGTGACTATGTATCAGG AAAAGAAGTTTTCTCCAACAACCATGGTGCCACAGAAATCTCAAGGTGGTGGTGGTGGTGCTGAGCAGCTTGCTAATGTT GGGGTTTTGGCCTTGGGTGGATCTGCTGCTGTTAGAAGCCCCACACCTGCTGGGGGGAATGGGAAACAACGTTTACGCTG GACTTCGGATCTTCATGACCGCTTTGTGGATGCTATTACTCAGCTTGGTGGACCAGATAGTGGGTATTTCTTTTCAGTAT TGAGATTAACACTAGGATAAGAAGGAACACAAACTTTCTTTTTGGTAATTTATATCATGGTCTTGCTAAACCATGTGGAA AAGAGAATGCTCTATAATGCAGTGTATAAGCATCACTTAGTTCAACATATTAAGGAAGCTTAGTAGTAGTATTCTTTGAG ATTGCACATTTTTTTAATGCGAGTTGCGTCCCAATGATTGCATTGTGTTGCACACTAATTGACAATACCATGTTGAATTG CATGGATTCAATTCAATTTCGTGTAGCCATTAAATAGGAAAGTTAATGCTACACTTTGAATCATATGTCTCGGAAGTCGG AGTTTTATTTTGTATCAAATTCAATTCCACCTTTTGCAATCACTACAATGTTTTCTAGAATTCTCCAATGCCAAAATTAT TTCAGAAAAAAAAATAGTCAGATCAAATGCACATTCTATAGTGAAACCAAAACTAGCAATGTTTAAGAATGCTGGAATAG TCCCTGTTGTTTCTTCTTTTTAGTGAGTTTAGCATCCCCTGTTATTTGAAACTACTGGCTTCAGTTTTGTGGGCATGTGA GGCAGGCAGGCACAGCACTTTCAAGTTAGGAAGTCACTTGAACTTTTAACATTTCAGTGGCTGATTATTTTTACTTGATG TAGACTCATTGATGGAAAGTGTCACTCTTGTTATTATTTTTTGCACGTTGGATTTTGCTTTAACTTCTTTAGGCGGATAA TCTGCAAAAAAATAGCTAATTTCCTGTTTTTTTAATTTACTCACGACAGGAGCGACACCAAAAGGTGTTCTGAGAGTGAT GGGTGTACCTGGACTGACCATTTATCATGTCAAAAGCCATTTACAGGTATTACTCTCTGGTCTTATAATTTGGGTATTAT GTGCATAAAACGTCAGCTTGTTTACTAATTTGACTTTGATTCTAATTTCTGTCTGATCATCATATGTAGAAGTATCGCCT GGCAAAGTACTTACCTGATTCACTAGTTGATGGTAAATTTGCCTTGATTTTTTTTCCTTCAAACAAAGTAATTAGAAATA CCATGATTTTCTTTATTCACTTTTTCAATTGAGTCAGTGGGAATTGTGCTTTGGACTTTCAGACTCTAAAGAGGAGAAAA GGACTTCTGGAGACAGCACTTCCGGTGTTGATTCTTCCCCGTGAGTGTCTTAGTTGTTTTCCAATGATAATTTTTAACCC CTTAACTATGCTGTCTACTTCTAACATTTTAATGAAACCTTTACTGTCTTCAGGGGATTGCAAATCAATGATGCTCTAAG AATGCAAATGGAGGTTCAGAAACGTCTCCATGAACAGCTTGAGGTTTGGTACCTGGCCTCGCTATTTTTCTGATTGCTGA ATTTTAGCCCACAAATACTCTTCCTTCTTGTGCATAGGAAAACAGGTTTAGTAAGAATTGAAGACCAAAAAAAATGTTTG AAAAAAATGACCATAACACATACTGACTGGAGACAGGGCAAAAACAAAAGATGGGAAAATAACCAATGGCATACTTCCAA TAAATGCTAGCACACAAATCATTTATTTCTCATCCTTTAAGAGTTCATATCACATACAAAAACTTTTACAAGTTTCTGTT GTTCACATTGCATTTAAGTTCATCTTGTTGCATGATTAAACTTGGAATCTTGGATACTCTAACTTAACCATCCATTTATT TATCATTTCAGTGATTGACACTTGACGTAAATTTGGTCATAGTTATGCCATTTGATATTTTTTTTTACTTTTTTTGTTGA TTGAAATAGAAGGGGAGCCTTGGCGCAACAGTAAAAAGTTGTGGCCATTTTTTTTTTTTGTTTTCTCTTTTGATAGGCAA GTTCTGGCCATGTGACTGGGGTTTGTGTAAAAACAGGGTAAGGCTGCGTACAAAAGACCAAGTGGTCGGACCCTTCCTGA CCCCATACATATAGCCAGTGCTTTCGTGCACTGGGCTGCCCTTTTGATTGGAAGAAATTAGAACATGTGACGTGTATTTT AAAAGGAATAACTGAACAAGTATCCATATGACTGATATGATTTGTTTAACTAACAATAAAACTTCAAATGTTACTATAAT AATTTAAAGACAGGTCGATTTCAAATTCAATTTCTTTATTAAACAATACTTTGTATATTGTACACTGCGTGTACAGAAGG CACTGCTTATTTTTCTGCTCTCTAAAATTTATGAAACTCTTTGAAATATGCCAACTCTGTTTGTTTGATCTGAGCCATGC ATCTTTTGCTGGCTGGGTAAAACCCATCACATGAATCTACTAAGTTAGCCCTCTGATGAATCATAATTAGCTCCTACCTC CTAATCAGTCTGAGGACTTGTGCAATAACAAGATGAATGCTGCTTGTTAAATTTGATGAGTAAGCATTTCTCCTAATGAT AAAGCCTTGAATTTCCTGCTATGAAATTCCAGGTTCAAAAGCAGTTACAAATGAGAATTGAAGCTCAGGGCAAATACTTG CAGAAGATCATAGAGGAACAGCAAAAATTAGGTAGTACCTTGACAGTCTCAGAAATGCTTCCACTGTCACATGATAAGCA AAATCATCCTCAGTCAGAGCCTTCTGGATCCAGTGATGCCCTTGCCGGCACTTTGTCTCCACATAAACGACGGAGAATTG ATGATGGTTCAAATGATGACTTAGCTGCTTCCCAAGATCCAAGAGAGACTGCACAGAAGAATGACTGCAATGTCGGTCAA TTAGATCCAAACTTGTATGAAGATGATGCAGGGTTTGGATATGATTTGGAGAGAGAAAATGATGAAGATGAGGAGAGTGA GCAATAAGAACTAGGTTCGGATTGTAGGTAAACACTTGTCTCATTGTAATGTCTAGGGTATTTACTTTTCTGGTAGAAAT ACAAGTCATGCTTTTGTAAATTATACTTCATGCATTCCATTTGTACATGGTAAGGTAGATATAGATGCATTATTCTCCCT GTTGTATGAGTTATAAACACTGCGTTTTCACACCCAACAGAAATGCATGACATGCTTTTTACATGTGGTCTTGAAAGATG GATGTCGGAAGCTGGATACTCATGAATGTTCAGCTTGTTATTGTTAAGTCAATATCAAAGATATCAATTAGCTAGTGATG ACATTGTTAATCCTTAGCCAATGTCATCCAGTGAGATAAGGCCTTGTTTGTTGAAGATAGCAATGAAAAGCTTCCCATTA CTTTAATCTTGTTTTTTACTTAAAAGAGGTTGATGTTGTTTGGCATGTTTTCCTCATTACGCTCATACACTCGTTCAAAA ATAGCAATTTCCACTCCTTCTACCAAGTAAAAGAATAGTAATTGAAGAGTTTATTAATATGGATGGGGTGAACTATCTCG TGGTGGATTGATACAGTCTGGGAGATTAGACAAGCTGAGTAGGTTATATTCTTACTATGTACATTCGGAAAGAAAGGGAG GAAGGGTGTGAGAGGGGTGCTCCTAACCCCTACAGGCTACAGCCCTACTTGACTTTTGACTTCCGTTCAGGGATTGAAGT AACCCAATTGCCACCCAAAGATCCGTAATGAAACAATCACTCTGAATGTTTGGGGGAAATAGAAAAGAAAGCAAAACAAC ACCTCAATTTGAAAGGCATTTGATCATAGCTAAACTTTAGTCCATGAAAAATGCCATCAGCGTTGTTCTTTAAGTTCGAC ATCTCATG
CDS sequence (LotjaGi1g1v0653900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCCACAGAAATCTCAAGGTGGTGGTGGTGGTGCTGAGCAGCTTGCTAATGTTGGGGTTTTGGCCTTGGGTGGATC TGCTGCTGTTAGAAGCCCCACACCTGCTGGGGGGAATGGGAAACAACGTTTACGCTGGACTTCGGATCTTCATGACCGCT TTGTGGATGCTATTACTCAGCTTGGTGGACCAGATAGAGCGACACCAAAAGGTGTTCTGAGAGTGATGGGTGTACCTGGA CTGACCATTTATCATGTCAAAAGCCATTTACAGAAGTATCGCCTGGCAAAGTACTTACCTGATTCACTAGTTGATGACTC TAAAGAGGAGAAAAGGACTTCTGGAGACAGCACTTCCGGTGTTGATTCTTCCCCGGGATTGCAAATCAATGATGCTCTAA GAATGCAAATGGAGGTTCAGAAACGTCTCCATGAACAGCTTGAGGTTCAAAAGCAGTTACAAATGAGAATTGAAGCTCAG GGCAAATACTTGCAGAAGATCATAGAGGAACAGCAAAAATTAGGTAGTACCTTGACAGTCTCAGAAATGCTTCCACTGTC ACATGATAAGCAAAATCATCCTCAGTCAGAGCCTTCTGGATCCAGTGATGCCCTTGCCGGCACTTTGTCTCCACATAAAC GACGGAGAATTGATGATGGTTCAAATGATGACTTAGCTGCTTCCCAAGATCCAAGAGAGACTGCACAGAAGAATGACTGC AATGTCGGTCAATTAGATCCAAACTTGTATGAAGATGATGCAGGGTTTGGATATGATTTGGAGAGAGAAAATGATGAAGA TGAGGAGAGTGAGCAATAA
Protein sequence (LotjaGi1g1v0653900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVPQKSQGGGGGAEQLANVGVLALGGSAAVRSPTPAGGNGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPG LTIYHVKSHLQKYRLAKYLPDSLVDDSKEEKRTSGDSTSGVDSSPGLQINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQ GKYLQKIIEEQQKLGSTLTVSEMLPLSHDKQNHPQSEPSGSSDALAGTLSPHKRRRIDDGSNDDLAASQDPRETAQKNDC NVGQLDPNLYEDDAGFGYDLERENDEDEESEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 268 | 268 | 6.5E-110 | – | |
| PANTHER | 1 | 268 | 268 | 6.5E-110 | – | |
| ProSiteProfiles | 38 | 98 | 61 | 12.008 | ||
| Gene3D | 39 | 98 | 60 | 3.6E-27 | – | |
| SUPERFAMILY | 41 | 95 | 55 | 3.76E-17 | ||
| TIGRFAM | 41 | 96 | 56 | 4.3E-26 | ||
| Pfam | 44 | 94 | 51 | 2.0E-6 | ||
| MobiDBLite | 105 | 127 | 23 | - | – | |
| Pfam | 127 | 173 | 47 | 7.8E-24 | ||
| Coils | 130 | 150 | 21 | - | – | |
| MobiDBLite | 188 | 272 | 85 | - | – | |
| MobiDBLite | 188 | 206 | 19 | - | – | |
| MobiDBLite | 209 | 226 | 18 | - | – | |
| MobiDBLite | 227 | 243 | 17 | - | – | |
| MobiDBLite | 258 | 272 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0653900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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