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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0653900 |
| Transcript ID | LotjaGi1g1v0653900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB transcription factor; TAIR: AT2G01060.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q9SJW0|PHL7_ARATH Myb family transcription factor PHL7; TrEMBL-Plants: tr|A0A151TAH9|A0A151TAH9_CAJCA Myb family transcription factor APL; Found in the gene: LotjaGi1g1v0653900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:121331742..121336469) extracted from Lotus japonicus Gifu genome v1.2.
CTCCATTCCAATAACACAATAAGAGAATCTCACCGGTCGGCCACACCTTCACTCTAGGAATCTTTCCAACTCTCCAACAA ACCAAAACGGCATCGATACCTCATAGAAACGACGACAAACACAAACACACCAAACAGAACGACACGTGTACGGGACCCAC CACCCACCTCGTTAACCACAACTCCCAATCAAAACGCCGCCGTCTGCTCATTTCAACGCTGCATTTCGTGGCGGTCCCTC CCTCTCTAAATCCCAATCATTTCCTCAAAGACAAAAAACAACCACCAATCCCCAATCTCATCACTTTTCCCGAGAAAATC ACCCAATTTTCTTTCTCAGATTCCCGGAAATTCCGAAAAACGCAGCAATTCGCACTCCGGTGAGGAAGAATCTCCTGCTT CCTCTGCCAATTCAATTCAATTCAATCTCGAACCAGGTGGTGGATTCCGAATGCTTCAATTTTCGGTTGAAGAATGACTG CTCTGATTCCGAATTCATCGATTGCATTAGATCTCTCTTCAAACCCTCATCAATCGGATTAACTTGTCCAATTTTAGGTC AATTTCCTGTTCTATTAATCTTTCCTGTTCAATTTTCGATGAATTTGATGATTTTAGTTGTTTTTTGAATGGTGTTTGAC TTGGATTTGTATTAATGTGAACTGTGAAGTTCATGGATGCTAGGTACTAGGTACTGCTAGTGTTGAATTTGTGGATTTTA TTTGTGAGATTTAGCAAAAATTGAAAATGATTGTTATTATTGTTCATTGTAAATTGTTTTCAGTGTGACTATGTATCAGG AAAAGAAGTTTTCTCCAACAACCATGGTGCCACAGAAATCTCAAGGTGGTGGTGGTGGTGCTGAGCAGCTTGCTAATGTT GGGGTTTTGGCCTTGGGTGGATCTGCTGCTGTTAGAAGCCCCACACCTGCTGGGGGGAATGGGAAACAACGTTTACGCTG GACTTCGGATCTTCATGACCGCTTTGTGGATGCTATTACTCAGCTTGGTGGACCAGATAGTGGGTATTTCTTTTCAGTAT TGAGATTAACACTAGGATAAGAAGGAACACAAACTTTCTTTTTGGTAATTTATATCATGGTCTTGCTAAACCATGTGGAA AAGAGAATGCTCTATAATGCAGTGTATAAGCATCACTTAGTTCAACATATTAAGGAAGCTTAGTAGTAGTATTCTTTGAG ATTGCACATTTTTTTAATGCGAGTTGCGTCCCAATGATTGCATTGTGTTGCACACTAATTGACAATACCATGTTGAATTG CATGGATTCAATTCAATTTCGTGTAGCCATTAAATAGGAAAGTTAATGCTACACTTTGAATCATATGTCTCGGAAGTCGG AGTTTTATTTTGTATCAAATTCAATTCCACCTTTTGCAATCACTACAATGTTTTCTAGAATTCTCCAATGCCAAAATTAT TTCAGAAAAAAAAATAGTCAGATCAAATGCACATTCTATAGTGAAACCAAAACTAGCAATGTTTAAGAATGCTGGAATAG TCCCTGTTGTTTCTTCTTTTTAGTGAGTTTAGCATCCCCTGTTATTTGAAACTACTGGCTTCAGTTTTGTGGGCATGTGA GGCAGGCAGGCACAGCACTTTCAAGTTAGGAAGTCACTTGAACTTTTAACATTTCAGTGGCTGATTATTTTTACTTGATG TAGACTCATTGATGGAAAGTGTCACTCTTGTTATTATTTTTTGCACGTTGGATTTTGCTTTAACTTCTTTAGGCGGATAA TCTGCAAAAAAATAGCTAATTTCCTGTTTTTTTAATTTACTCACGACAGGAGCGACACCAAAAGGTGTTCTGAGAGTGAT GGGTGTACCTGGACTGACCATTTATCATGTCAAAAGCCATTTACAGGTATTACTCTCTGGTCTTATAATTTGGGTATTAT GTGCATAAAACGTCAGCTTGTTTACTAATTTGACTTTGATTCTAATTTCTGTCTGATCATCATATGTAGAAGTATCGCCT GGCAAAGTACTTACCTGATTCACTAGTTGATGGTAAATTTGCCTTGATTTTTTTTCCTTCAAACAAAGTAATTAGAAATA CCATGATTTTCTTTATTCACTTTTTCAATTGAGTCAGTGGGAATTGTGCTTTGGACTTTCAGACTCTAAAGAGGAGAAAA GGACTTCTGGAGACAGCACTTCCGGTGTTGATTCTTCCCCGTGAGTGTCTTAGTTGTTTTCCAATGATAATTTTTAACCC CTTAACTATGCTGTCTACTTCTAACATTTTAATGAAACCTTTACTGTCTTCAGGGGATTGCAAATCAATGATGCTCTAAG AATGCAAATGGAGGTTCAGAAACGTCTCCATGAACAGCTTGAGGTTTGGTACCTGGCCTCGCTATTTTTCTGATTGCTGA ATTTTAGCCCACAAATACTCTTCCTTCTTGTGCATAGGAAAACAGGTTTAGTAAGAATTGAAGACCAAAAAAAATGTTTG AAAAAAATGACCATAACACATACTGACTGGAGACAGGGCAAAAACAAAAGATGGGAAAATAACCAATGGCATACTTCCAA TAAATGCTAGCACACAAATCATTTATTTCTCATCCTTTAAGAGTTCATATCACATACAAAAACTTTTACAAGTTTCTGTT GTTCACATTGCATTTAAGTTCATCTTGTTGCATGATTAAACTTGGAATCTTGGATACTCTAACTTAACCATCCATTTATT TATCATTTCAGTGATTGACACTTGACGTAAATTTGGTCATAGTTATGCCATTTGATATTTTTTTTTACTTTTTTTGTTGA TTGAAATAGAAGGGGAGCCTTGGCGCAACAGTAAAAAGTTGTGGCCATTTTTTTTTTTTGTTTTCTCTTTTGATAGGCAA GTTCTGGCCATGTGACTGGGGTTTGTGTAAAAACAGGGTAAGGCTGCGTACAAAAGACCAAGTGGTCGGACCCTTCCTGA CCCCATACATATAGCCAGTGCTTTCGTGCACTGGGCTGCCCTTTTGATTGGAAGAAATTAGAACATGTGACGTGTATTTT AAAAGGAATAACTGAACAAGTATCCATATGACTGATATGATTTGTTTAACTAACAATAAAACTTCAAATGTTACTATAAT AATTTAAAGACAGGTCGATTTCAAATTCAATTTCTTTATTAAACAATACTTTGTATATTGTACACTGCGTGTACAGAAGG CACTGCTTATTTTTCTGCTCTCTAAAATTTATGAAACTCTTTGAAATATGCCAACTCTGTTTGTTTGATCTGAGCCATGC ATCTTTTGCTGGCTGGGTAAAACCCATCACATGAATCTACTAAGTTAGCCCTCTGATGAATCATAATTAGCTCCTACCTC CTAATCAGTCTGAGGACTTGTGCAATAACAAGATGAATGCTGCTTGTTAAATTTGATGAGTAAGCATTTCTCCTAATGAT AAAGCCTTGAATTTCCTGCTATGAAATTCCAGGTTCAAAAGCAGTTACAAATGAGAATTGAAGCTCAGGGCAAATACTTG CAGAAGATCATAGAGGAACAGCAAAAATTAGGTAGTACCTTGACAGTCTCAGAAATGCTTCCACTGTCACATGATAAGCA AAATCATCCTCAGTCAGAGCCTTCTGGATCCAGTGATGCCCTTGCCGGCACTTTGTCTCCACATAAACGACGGAGAATTG ATGATGGTTCAAATGATGACTTAGCTGCTTCCCAAGATCCAAGAGAGACTGCACAGAAGAATGACTGCAATGTCGGTCAA TTAGATCCAAACTTGTATGAAGATGATGCAGGGTTTGGATATGATTTGGAGAGAGAAAATGATGAAGATGAGGAGAGTGA GCAATAAGAACTAGGTTCGGATTGTAGGTAAACACTTGTCTCATTGTAATGTCTAGGGTATTTACTTTTCTGGTAGAAAT ACAAGTCATGCTTTTGTAAATTATACTTCATGCATTCCATTTGTACATGGTAAGGTAGATATAGATGCATTATTCTCCCT GTTGTATGAGTTATAAACACTGCGTTTTCACACCCAACAGAAATGCATGACATGCTTTTTACATGTGGTCTTGAAAGATG GATGTCGGAAGCTGGATACTCATGAATGTTCAGCTTGTTATTGTTAAGTCAATATCAAAGATATCAATTAGCTAGTGATG ACATTGTTAATCCTTAGCCAATGTCATCCAGTGAGATAAGGCCTTGTTTGTTGAAGATAGCAATGAAAAGCTTCCCATTA CTTTAATCTTGTTTTTTACTTAAAAGAGGTTGATGTTGTTTGGCATGTTTTCCTCATTACGCTCATACACTCGTTCAAAA ATAGCAATTTCCACTCCTTCTACCAAGTAAAAGAATAGTAATTGAAGAGTTTATTAATATGGATGGGGTGAACTATCTCG TGGTGGATTGATACAGTCTGGGAGATTAGACAAGCTGAGTAGGTTATATTCTTACTATGTACATTCGGAAAGAAAGGGAG GAAGGGTGTGAGAGGGGTGCTCCTAACCCCTACAGGCTACAGCCCTACTTGACTTTTGACTTCCGTTCAGGGATTGAAGT AACCCAATTGCCACCCAAAGATCCGTAATGAAACAATCACTCTGAATGTTTGGGGGAAATAGAAAAGAAAGCAAAACAAC ACCTCAATTTGAAAGGCATTTGATCATAGCTAAACTTTAGTCCATGAAAAATGCCATCAGCGTTGTTCTTTAAGTTCGAC ATCTCATG
CDS sequence (LotjaGi1g1v0653900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATCAGGAAAAGAAGTTTTCTCCAACAACCATGGTGCCACAGAAATCTCAAGGTGGTGGTGGTGGTGCTGAGCAGCT TGCTAATGTTGGGGTTTTGGCCTTGGGTGGATCTGCTGCTGTTAGAAGCCCCACACCTGCTGGGGGGAATGGGAAACAAC GTTTACGCTGGACTTCGGATCTTCATGACCGCTTTGTGGATGCTATTACTCAGCTTGGTGGACCAGATAGAGCGACACCA AAAGGTGTTCTGAGAGTGATGGGTGTACCTGGACTGACCATTTATCATGTCAAAAGCCATTTACAGAAGTATCGCCTGGC AAAGTACTTACCTGATTCACTAGTTGATGACTCTAAAGAGGAGAAAAGGACTTCTGGAGACAGCACTTCCGGTGTTGATT CTTCCCCGGGATTGCAAATCAATGATGCTCTAAGAATGCAAATGGAGGTTCAGAAACGTCTCCATGAACAGCTTGAGGTT CAAAAGCAGTTACAAATGAGAATTGAAGCTCAGGGCAAATACTTGCAGAAGATCATAGAGGAACAGCAAAAATTAGGTAG TACCTTGACAGTCTCAGAAATGCTTCCACTGTCACATGATAAGCAAAATCATCCTCAGTCAGAGCCTTCTGGATCCAGTG ATGCCCTTGCCGGCACTTTGTCTCCACATAAACGACGGAGAATTGATGATGGTTCAAATGATGACTTAGCTGCTTCCCAA GATCCAAGAGAGACTGCACAGAAGAATGACTGCAATGTCGGTCAATTAGATCCAAACTTGTATGAAGATGATGCAGGGTT TGGATATGATTTGGAGAGAGAAAATGATGAAGATGAGGAGAGTGAGCAATAA
Protein sequence (LotjaGi1g1v0653900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYQEKKFSPTTMVPQKSQGGGGGAEQLANVGVLALGGSAAVRSPTPAGGNGKQRLRWTSDLHDRFVDAITQLGGPDRATP KGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPDSLVDDSKEEKRTSGDSTSGVDSSPGLQINDALRMQMEVQKRLHEQLEV QKQLQMRIEAQGKYLQKIIEEQQKLGSTLTVSEMLPLSHDKQNHPQSEPSGSSDALAGTLSPHKRRRIDDGSNDDLAASQ DPRETAQKNDCNVGQLDPNLYEDDAGFGYDLERENDEDEESEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 279 | 279 | 8.0E-115 | – | |
| MobiDBLite | 1 | 17 | 17 | - | – | |
| MobiDBLite | 1 | 25 | 25 | - | – | |
| PANTHER | 1 | 279 | 279 | 8.0E-115 | – | |
| ProSiteProfiles | 49 | 109 | 61 | 12.008 | ||
| Gene3D | 50 | 109 | 60 | 3.8E-27 | – | |
| SUPERFAMILY | 52 | 106 | 55 | 4.12E-17 | ||
| TIGRFAM | 52 | 107 | 56 | 4.6E-26 | ||
| Pfam | 55 | 105 | 51 | 2.2E-6 | ||
| MobiDBLite | 116 | 138 | 23 | - | – | |
| Pfam | 138 | 184 | 47 | 8.3E-24 | ||
| Coils | 141 | 161 | 21 | - | – | |
| MobiDBLite | 199 | 283 | 85 | - | – | |
| MobiDBLite | 199 | 217 | 19 | - | – | |
| MobiDBLite | 220 | 237 | 18 | - | – | |
| MobiDBLite | 238 | 254 | 17 | - | – | |
| MobiDBLite | 269 | 283 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0653900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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