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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0654900 |
| Transcript ID | LotjaGi1g1v0654900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase; TAIR: AT3G56940.1 dicarboxylate diiron protein, putative (Crd1); Swiss-Prot: sp|Q6SJV8|CRD1_GOSHI Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic; TrEMBL-Plants: tr|I3SCT7|I3SCT7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0654900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:121431101..121433735) extracted from Lotus japonicus Gifu genome v1.2.
ATTCTTGTCACTCTTCTCCTCAGTCCTCAGTCCTCAACCAGAGTTTGCAATGGCTCTTGTGAAACCCATTTCCAAGTTCA CCAATGCTGCTCCCAAATTCAGCAACCCCAGAACAATTTCACACTCCAAGTTCAGCACTGTAAGAATGTCTGCAACAACC ACACCACCATCCTCCACAAAACCAAGCAAGAAAGCCAATAAAACTTCCATCAAGGAGACCCTTTTGACACCAAGGTTCTA CACCACTGATTTTGATGAGATGGAGACCCTTTTCAACACTGAGATCAACAAGAACCTGAACGAGCATGAGTTTGAAGCTC TGCTTCAGGAGTTCAAGACTGATTACAACCAGACTCACTTTGTGAGGAACAAGGAGTTCAAGGAGGCTGCTGATAAGCTT GATGGCCCTCTCAGGCAGATCTTTGTGGAGTTCCTTGAGAGGTCTTGCACTGCTGAATTCTCTGGCTTTCTTCTCTACAA AGAGCTTGGAAGGAGGCTCAAGGTAATGAAAACTGAAAACTCCCTCTCTTTATTTCTTCACAATTTGATGCAGAATTCAA CTTTGCAAATTGATAGTTGTGGTTTTTATCAATTCAAAGGGGAAAAGATTTAATTTTTAGTTGTTAGAGAATTTTGTTCT TGCTCTATACAGTTAGGTATGAGGATTCTGGTCTTATTTTATGTGGGTTGTTTGATGTAATTCTGCTTATAGCATGTTTG TATCAACCTCTCTTTCATCAGAATCAATTCTGGAACCCAGAAGCTAATCATATAAGCTTCTTTTCAGAATTGATTTTGGC TTCGAAATCAATTATGGAAGAGTTTCCAAGCATGCACTTAGTAAAATCACTTTTGGCCTTCTATTCTTAGCCTGATTTAT TGCTTGGGATGTTGATATTGCAGAAAACCAACCCTGTGGTGGCTGAGATTTTCTCCCTGATGTCTAGGGATGAGGCTAGG CATGCTGGGTATAGACTCACCTTGTGCTTTTAAGTGCATGTTTGGATACATGGTGGAAAACTACGGTGAGCCTAAATCAC GGTAGACAAAAGCAACTTCCCTTAGCTTTTGTGCTGTCCACTGTGATTTTGGCTTGAATGTGGTTTTTCACCGTGTATCC AAACATCCACCAAGTCTTAATTGTTTCGTCCTTCCATCTTTCCATATGATGGTACATAACCTCATTCTTTTGATTCCATG CAGGTTTCTGAACAAGGGTTTATCTGATTTTAATTTGGCATTGGACTTGGGTTTCCTAACAAAAGCTAGGAAATACACAT TTTTCAAGCCCAAGTTTATCTTCTATGCTACATATTTGTCGGAGAAAATTGGATACTGGAGATACATAACCATATACAGG CATCTCAAGGCCAACCCTGAGTACCAATGTTATCCCATTTTCAAGTACTTTGAGAACTGGTGCCAGGATGAGAACAGGCA TGGAGACTTCTTCTCTGCCTTGATGAAGGCACAGCCACAATTTCTAAATGACTGGAAGGCTAAGTTGTGGTCCAGATTCT TCTGCCTATCGGTAATTTTTTCTCTTTTGCAAACAATTTTTTGGTTTTCTCTTTTGCAAAGTTGTGTGAATTGATGCTAA ATTATAGAATACACAGTGCAGACCTTAACCAATATTGCAAATCAATATCTGTTATATCCAAGATGCAAAACTTCAGTCTA AGAGATCACATTTCTCCTGTCTTTTATTATAAGGTTGTGTTCATTACCTCAACTTAAAACATAATTATCAAATTTGTCTT GCAGGTTTATGTGACCATGTATCTCAATGATTGCCAACGCACAGATTTCTATGAAGGCATTGGACTTAACACAAAAGAAT TTGACATGCATGTCATTATTGAGGTTAGTTTGTGTTCATATTTTTGCCATGATCACTGCTGAAAGCCATTTAGGGTGTGT TTGGGGAAACAATTCAATGAAACATTGATGTCAATAAGCGCTTATTTATAAGCTAATTTGAGAAGTTTATTGAAGCAAAC TCAAAATAGCTTATGGATACATATAAACGGCTCATTCAGAAGCTGATCTGAGCAACTTATAAACATAAGCTCAAAATAAC TTATAGGTAGGCCATAAACTATTTTTACAAGCTTACTCAAACACTTGTATAAGTGCTTATACTATAAGATAAGCTCTTCC AAAATCTGCCTTAGTAATTTACTGTTTGTTTCTACTCATTCTCCAATACTTAAGGATGAATATAGTAACTGACTTACAAA ATTTAAGTAATGGAACCTGTGTAACCATGAAAAACACACATGACAAGTAAGAGTTGATCAACATAGAACAAATGCTGAAC TCAAATTACAAGCATTTACTCAAAGTAACCTTTCTGGATTGTTTTTTGCAGACAAACCGCACAACGGCTCGGATTTTCCC GGCTGTTCTTGATGTTGAGAACCCCGAGTTCAAGCGAAGGCTTGACCGGATGGTGGAGATAAACGAGAAGATTCTTGCTG TTGGTGAGAGTGATGACATTCCATTTGTGAAGAACTTAAAGAGGATCCCACTGATTGCTGCCCTGGCATCCGAGCTCTTG GCTACATATCTAATGCCACCAATTGAGTCAGGATCTGTAGATTTGGCAGAATTCGAACCACAGCTTGTGTACTGA
CDS sequence (LotjaGi1g1v0654900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTTGTGAAACCCATTTCCAAGTTCACCAATGCTGCTCCCAAATTCAGCAACCCCAGAACAATTTCACACTCCAA GTTCAGCACTGTAAGAATGTCTGCAACAACCACACCACCATCCTCCACAAAACCAAGCAAGAAAGCCAATAAAACTTCCA TCAAGGAGACCCTTTTGACACCAAGGTTCTACACCACTGATTTTGATGAGATGGAGACCCTTTTCAACACTGAGATCAAC AAGAACCTGAACGAGCATGAGTTTGAAGCTCTGCTTCAGGAGTTCAAGACTGATTACAACCAGACTCACTTTGTGAGGAA CAAGGAGTTCAAGGAGGCTGCTGATAAGCTTGATGGCCCTCTCAGGCAGATCTTTGTGGAGTTCCTTGAGAGGTCTTGCA CTGCTGAATTCTCTGGCTTTCTTCTCTACAAAGAGCTTGGAAGGAGGCTCAAGAAAACCAACCCTGTGGTGGCTGAGATT TTCTCCCTGATGTCTAGGGATGAGGCTAGGCATGCTGGGTTTCTGAACAAGGGTTTATCTGATTTTAATTTGGCATTGGA CTTGGGTTTCCTAACAAAAGCTAGGAAATACACATTTTTCAAGCCCAAGTTTATCTTCTATGCTACATATTTGTCGGAGA AAATTGGATACTGGAGATACATAACCATATACAGGCATCTCAAGGCCAACCCTGAGTACCAATGTTATCCCATTTTCAAG TACTTTGAGAACTGGTGCCAGGATGAGAACAGGCATGGAGACTTCTTCTCTGCCTTGATGAAGGCACAGCCACAATTTCT AAATGACTGGAAGGCTAAGTTGTGGTCCAGATTCTTCTGCCTATCGGTTTATGTGACCATGTATCTCAATGATTGCCAAC GCACAGATTTCTATGAAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCATTATTGAGACAAACCGCACAACG GCTCGGATTTTCCCGGCTGTTCTTGATGTTGAGAACCCCGAGTTCAAGCGAAGGCTTGACCGGATGGTGGAGATAAACGA GAAGATTCTTGCTGTTGGTGAGAGTGATGACATTCCATTTGTGAAGAACTTAAAGAGGATCCCACTGATTGCTGCCCTGG CATCCGAGCTCTTGGCTACATATCTAATGCCACCAATTGAGTCAGGATCTGTAGATTTGGCAGAATTCGAACCACAGCTT GTGTACTGA
Protein sequence (LotjaGi1g1v0654900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALVKPISKFTNAAPKFSNPRTISHSKFSTVRMSATTTPPSSTKPSKKANKTSIKETLLTPRFYTTDFDEMETLFNTEIN KNLNEHEFEALLQEFKTDYNQTHFVRNKEFKEAADKLDGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEI FSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEYQCYPIFK YFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWSRFFCLSVYVTMYLNDCQRTDFYEGIGLNTKEFDMHVIIETNRTT ARIFPAVLDVENPEFKRRLDRMVEINEKILAVGESDDIPFVKNLKRIPLIAALASELLATYLMPPIESGSVDLAEFEPQL VY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 402 | 402 | 1.7E-256 | – | |
| PANTHER | 1 | 402 | 402 | 1.7E-256 | ||
| MobiDBLite | 31 | 51 | 21 | - | – | |
| Hamap | 43 | 402 | 360 | 48.752 | ||
| TIGRFAM | 47 | 387 | 341 | 1.3E-175 | ||
| CDD | 57 | 386 | 330 | 0.0 | ||
| SUPERFAMILY | 125 | 282 | 158 | 3.72E-17 | ||
| Pfam | 127 | 260 | 134 | 2.7E-41 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Photosynthesis | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. | ||
| Biological process | Chlorophyll biosynthetic process | The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. | ||
| Molecular function | Magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity | Catalysis of the reaction: magnesium protoporphyrin IX 13-monomethyl ester + 3 NADPH + 3 H+ + 3 O2 = divinylprotochlorophyllide + 3 NADP+ + 5 H2O. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi1g1v0654900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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