Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0656100 |
| Transcript ID | LotjaGi1g1v0656100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING-finger ubiquitin ligase; TAIR: AT1G68070.1 Zinc finger, C3HC4 type (RING finger) family protein; Swiss-Prot: sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1; TrEMBL-Plants: tr|K7MY22|K7MY22_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0656100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:121576053..121581278) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAATGATTCATGATGTTCCAAAGTCAACAAGAGTATCTAGTTGCTGCCGCCGCATTATCGCCCTCTAGTGTCACCAC GCTTCAATTAATCCTTCGCACTCTCGATGCGACGTCGTTTCACTCCCCTCCAGAAATCTCATTTCACCACCCAATTTCCT CTCATTTTCTATTCAAACCCTCTCTCTACTTTCTCTCTCTAGAGAATTTCTCTCTCTAGCATGGAACCACAGCAGCAGCA ACCAGAGCAGCGCCACCTCCTCACCGGCGGAGGCGATTCTCCGGCGCTCTGCGGCCCCACCACCTTCACTTTCCCCTTCG CCGGCGGTGAGGGCTGCGCGTATTCAAGGGCGGTACTGGTGGTGGACATGGTGTGGAACCTGGCGTTCGTGGTGGCCGCC GCCGGCGTGCTCCTCTTCACGCTCCACGAGCGGCCTTCTACTCCCTTGAGGCTGTGGCTCTGTGGCTACGCCTTCGAGTG TCTTCTCCACATGGCTTTCGTCTACTCTGAGTATCGCTCCTCCACGGCTCTTGATTCCTTCTCCCGCACTCCCTACAGGT AACCGGAACTTTCACTCTGATTCCTTTCTCCAATTCCTCTCTCAACTAACTGAAGCAATTGATTAGAGAAATTTTGAAGT TGCATGTTTATTTTGTGCTTGCAATTGATTTGATGATTATCTAGGAAATTTTGTGTGTTTGTTTTGCTGTTGAATTTTTA GTATGGCATTGTGTGATCCATGTAGCGAACCTCATCTTCATCTAGTGGTAAGAGACTTGGTTTCTGTTCTTGTTGGGGAC TGGATGATTGATGTTCATGGTGTTGTTATATGAGAGTGATGATATTCTGTTGTCTATGTGTGCTTTTGTTCCCGTTCCTT TGCAGTGGCATGTGAATGATGTGATTGAACTTTAATTTTACTTTATTCTTCAATGCTTTCAGTATTTTGAAGAAGTTGGA ACCTATGAACACTTTGACATCGTCCGTTTGGTGGGTGTTTGGATTTTACTGGATTGTTGTGGGCGGCCAAGCACTTGTGG AGGATTCTCCACGTCTCTACTGGTAAGAACCTTAATTTCAATGTTTTCTTTCTTTTTATGGCAAGAAAATGTGATGAATA ACGAGATAACCTTCAAAAATAATATAGCAGTTAAAAAAATAGTTTTGACTACTTGAAAGTTCCTCCTGAGTCTTGAGCAG AATAAGTAGAGAGTAGATTGTACTTAAGAAGTATGAAATAGATTATCGTGGAATGTTGTGCCTCTGTTTGGCTTGGATGT CATATAAATAAGGGGAATGAAAGTGAGGTGAAACTATATCCACAACCACCAATAATTAATTTTTGTTGATGCGTTATTTA ATGAAGTTTAGAGGTTCTGAGAATTGGAGATAACTGAAGAATGAATTCACTGATTATTTAGTATTGCAGATACAGGTATA TATGGAGTCTCAATGTTCTGTTGAGCTACTGTCAAAATTTAAAACTAACTAATTTACAGCTGTTGTTTACTAACTAACAG ACACAGGGATACAATAAGGTGCACTCTTAGTATAGCTTAAGATATATACTCCAGTACTCCTCCCTCAAACTCAACTAGGG TGTGAGAGGATCACTCACAGTGAGCTTGGAGAAACCTACTGGATGGCGAGGGCTTGGTAAGAGCATCAGCCACCTGGAGT CTGCTGGCAGATGCCGAGCTACAAGTTCCTTGTTAATGACCTTCTGTCAAAAGAAATGTTCAATTGCATATGCTTGGTCC GTGCTTGTAGGAGTAGGACCGAGTTGTGTGACAAGGAAACCCTGCTGAGGTTGTCACAGAAAAATGAAGGAACAACTGGA ACAACCTTAAGCTCCTGAAGGAGAATCTGAAAGAATGGAGCCTAAAAATGTGCATACAGTGCCCAGCAATCGCTTGCTTC CGAGACCACCAAGAGATAAGAATGGAGCCTCAAAATGTGCAGGCACCACAGATAGATTTGCAGTCATCTAGGTCACGGGC TAGTCCGTATCAGAGAAGCCCTGAATGTGAAGCAAGGATGAGGTTGCAGGCCGCAAAAGAGGGCCATAGGGCATAGTGCC TTTGAGATAATGCACAATATGCTTGAATGTAGTCCAACGAGGGCAGTCATCTGGGTCATGGCCTAGTCCGTATCAGAGAA GCCCTGAATGTGAAGAGAGGATGAGGTTGCAGGCCGCATAGTGCCTTTGAGATAATGCACAATATGCTTGAATGTAGTCC AACGAGAGTCCAAAAGTATTGAACCTAATCTGGAAGACCTTATTCTATGCGTAGCTTAGTTCGTGCCTTGTAGTGGTTAT GTACTGAAGGGGCCCCACAACCAACAGATAGAGTAATTGATCCAAGAAGGGAGAGCCACTAGTTTTTGCAAGTCTGTAAC CACTATCATAGGTGATGAAATGGGACAGCAGTCAGTCATATTGGCCTTAACCAATAGGTCCTGAATATATTTCCTGCTGA GGGAGGAGAAGAGAGCTAGGAGAAACCTCTTTGACTTCAATACCTAGGAAGTAGTCAAGTGTATCCAACTGCTTAAGGTT GAAACAACAACCGCCTCCACCACCAAACCTTTTTCCATTAGATGGTGAAACCATGGAAGATCCTTCTTCTTTTTTTCCTT TTAGGAAATCATTCTCATTTCTCAATTCTTTACATTTGTCTTGCTTTTATAGTTTTCAAACCTTTAAACTAGTTGATGAA ATGCAAAATCCTTACTGGTTTAACTAAAGAACTCTGTTGAATAGTCTGACTTTGACCCATATTTAGGACTAACAAGCTTT CATTATGCTGAAATCATATTATCTAATTCTTAAACTGGAAATTTGGGGTTACCTTTTCCATGGCATGGTGCACACAGAAG TCTTGTTGGAATAGGCTCCTATTTCTTGTCTGATATAAAGTTGGATCAAAGAGTAGTCTCTTGTGAGGTTGTGGTTACTT TGACGATTTCAAACTAGACCTACCCTACCAGTTAAGTTTGACTTATTTTATTGGAATAGGGCCTCTTGTTGAGCCTGTTG ATTCAAACTGAGGCTTTGTCAAGATACTCAGCTCAAGCGAGAATAAATAATATCACTCCCTTCGGTCCCAATGATAAAGT CCTCTCCAGACAATTACGCTTATTAAGAAAACATTTAATAAGGTTAGTTACTGTATTGGTTTCAAAAAAAATATATACAA TCTTCCACATTTATCCTTATTTAAAACAAAATTCTTTAGTGATTGTATTACTTGTATGATCCCACTATCTCTTTAATGGG TAGCATGGAAGAGAATTAATAGTGGGTGGTAATCAATATTTGGGAATTGAAAAGTAAAGAATACTAGGGGCATATATGGA AAAAGATAATAGAAATTCCTGAAATTTAGTAGGGGGTCTAATATAATGGGATACCAAGTATGTCTCTAAAGTGTCTTATA ATTAGGACTAGAGGGATAGAGAGTATACTTTTTTAGTAATTTTACAATGCAATACTTGTTTATTTCATCTTCTGGCATAA AAAGATCTTATCTAACATAATTATTCACTGATAAGTTTTCTAACATTATTTATACGCTCAATGACATTTTTATCACATTT GTGCAGGTTAACGGTGGTCTTTCTAGCATTCGATGTATTTTTTATTATCTTTTGCATTGGGATGGCGTGTGTAGTTTTCT TTGCTCTCTTCTGCATCCTCCCAATAATAGCATTAGCTTATGCTATAAGAATCAGAGAAGGTGCATCTGAAGAAGATATC AAGTCACTTCCTAAGTATAGGTTTAGTCAGTCAAATTCACTGCTGATGGTCCATGACAACAAGAAGCAGCTTATTAATGC AAGAAATGATTCATGCAACGAAAGCCATACAAGTGAAATTTTTCTAGATCCAGATGATTCGGTGAGTACTGACTGTGTCT CCTCATATCTCCGTATTACTTGCTGAAAATTACTCACCGTGATTGATTGCTTTTTGTCATAAAGTTGAAATAAATATGAA ACCACTGAAAGAGAATTAAACTGCTTGTGATTTATGTTGTAGGAATGCTGTATCTGCCTGTGTACATATGTTGATGGAGT AGAACTCTATCGCCTTCCCTGTACCCACCATTTTCATAGTGGATGCATTAGCCGATGGCTTCGGACGAAAGCAACCTGCC CCCTCTGCAAATTTAATCTCCTTAGAGCTGATACATTGGTTTGACCCTTCATAGATATAAAGATTGGAAGACAGTGAGTT ACAGTGTCAATTGAGAGGAACATGACACTAGTAAACCAATACATTTGCTAATCTGCTGACTAGTGTTGTTAAGTAAGTAG TAAGTAGTAGAAAAGGAAATGCTCAACCCCTTCATCTTTTAGTGGGTTCTAGTTTTAGGTTGTTTCCATAGTGGTCTTTC ATCTTTTGAATGTTCTTAAGCTTATGATGGGGTATGTGTATATATTGAGGGCCCATGAAGAGGGTCCCACCCCCCATAAT TTGTACTTATGAGGCATTATATAAACAAATTTTCTGTATAGCAATGTTTTTATTTTATTTTATAATTTGTTGAGTGTTTC CCCATTTCCACCCATAAATAAATTTAAGACTATATAGACGTCATAGCATACTTAACCATTTGGTTGTGAATAAAATTAAT AGAAATCTGCCTCATTGCTCTTTAAGTTGGGATGCATTGTCATGCGTTTCCACTAGTTGCATTTTCACATTGATGCAAGC CATATGCAAAGACAATACATAGTATAGAATGTAAGTGTAATTAAACATATTTGTGAATACATAGTATGTAATTGGGTGAT TTTATAGAGTTGAGAGATTAGAATTGATGTGGGAAGTAAATTAAATTGTAAAAGTAAATGACGTGGGTTAGAAGTTAACC CTTGGAAAAATACAAATTAGAAAGTTGCCAGGTGGGTTTAACGGTAAGAAAAATGGTCATAAATAGATATCCTTCCCTTT TATTTTTTTTCATTCTATTATTCGAAAACAGAGAGGGAGAGGGTGTGTGATAGCGAGTGAGAAATGGAAGGAAGAGGACT TGACGAAAGAGAGAGAGAGAGTTTGTTGGCGGCGGTGCAACGGCAGAAACGATGGCTTACTGGTGGTTCTCCGTCGCGGG TGGGTCTGATTCTTTGATTCTTGAGGGACGAAGAAACACGAATTGCGATTTTGACACGGTGAAAAGGTAAGGTTCTTGAG GTAAGAACTGTATCTGTGTTACTGCG
CDS sequence (LotjaGi1g1v0656100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACCACAGCAGCAGCAACCAGAGCAGCGCCACCTCCTCACCGGCGGAGGCGATTCTCCGGCGCTCTGCGGCCCCAC CACCTTCACTTTCCCCTTCGCCGGCGGTGAGGGCTGCGCGTATTCAAGGGCGGTACTGGTGGTGGACATGGTGTGGAACC TGGCGTTCGTGGTGGCCGCCGCCGGCGTGCTCCTCTTCACGCTCCACGAGCGGCCTTCTACTCCCTTGAGGCTGTGGCTC TGTGGCTACGCCTTCGAGTGTCTTCTCCACATGGCTTTCGTCTACTCTGAGTATCGCTCCTCCACGGCTCTTGATTCCTT CTCCCGCACTCCCTACAGTATTTTGAAGAAGTTGGAACCTATGAACACTTTGACATCGTCCGTTTGGTGGGTGTTTGGAT TTTACTGGATTGTTGTGGGCGGCCAAGCACTTGTGGAGGATTCTCCACGTCTCTACTGGTTAACGGTGGTCTTTCTAGCA TTCGATGTATTTTTTATTATCTTTTGCATTGGGATGGCGTGTGTAGTTTTCTTTGCTCTCTTCTGCATCCTCCCAATAAT AGCATTAGCTTATGCTATAAGAATCAGAGAAGGTGCATCTGAAGAAGATATCAAGTCACTTCCTAAGTATAGGTTTAGTC AGTCAAATTCACTGCTGATGGTCCATGACAACAAGAAGCAGCTTATTAATGCAAGAAATGATTCATGCAACGAAAGCCAT ACAAGTGAAATTTTTCTAGATCCAGATGATTCGGAATGCTGTATCTGCCTGTGTACATATGTTGATGGAGTAGAACTCTA TCGCCTTCCCTGTACCCACCATTTTCATAGTGGATGCATTAGCCGATGGCTTCGGACGAAAGCAACCTGCCCCCTCTGCA AATTTAATCTCCTTAGAGCTGATACATTGGTTTGA
Protein sequence (LotjaGi1g1v0656100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEPQQQQPEQRHLLTGGGDSPALCGPTTFTFPFAGGEGCAYSRAVLVVDMVWNLAFVVAAAGVLLFTLHERPSTPLRLWL CGYAFECLLHMAFVYSEYRSSTALDSFSRTPYSILKKLEPMNTLTSSVWWVFGFYWIVVGGQALVEDSPRLYWLTVVFLA FDVFFIIFCIGMACVVFFALFCILPIIALAYAIRIREGASEEDIKSLPKYRFSQSNSLLMVHDNKKQLINARNDSCNESH TSEIFLDPDDSECCICLCTYVDGVELYRLPCTHHFHSGCISRWLRTKATCPLCKFNLLRADTLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 49 | 49 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| PANTHER | 36 | 304 | 269 | 1.6E-146 | – | |
| PANTHER | 36 | 304 | 269 | 1.6E-146 | – | |
| TMHMM | 45 | 67 | 23 | - | – | |
| Phobius | 50 | 69 | 20 | - | – | |
| Phobius | 70 | 75 | 6 | - | – | |
| Phobius | 76 | 95 | 20 | - | – | |
| Phobius | 96 | 126 | 31 | - | – | |
| TMHMM | 126 | 145 | 20 | - | – | |
| Phobius | 127 | 145 | 19 | - | – | |
| Phobius | 146 | 151 | 6 | - | – | |
| Phobius | 152 | 170 | 19 | - | – | |
| TMHMM | 165 | 187 | 23 | - | – | |
| Phobius | 171 | 175 | 5 | - | – | |
| Phobius | 176 | 193 | 18 | - | – | |
| Phobius | 194 | 304 | 111 | - | – | |
| Gene3D | 241 | 303 | 63 | 5.3E-17 | ||
| SUPERFAMILY | 246 | 298 | 53 | 9.19E-18 | – | |
| Pfam | 252 | 294 | 43 | 4.7E-12 | ||
| ProSiteProfiles | 253 | 294 | 42 | 12.047 | ||
| SMART | 253 | 293 | 41 | 4.6E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0656100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…