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LotjaGi1g1v0672300.2

Overview

Field Value
Gene ID LotjaGi1g1v0672300
Transcript ID LotjaGi1g1v0672300.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Pentatricopeptide repeat-containing protein family; TAIR: AT2G41720.3 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720; TrEMBL-Plants: tr|A0A151TTX4|A0A151TTX4_CAJCA Pentatricopeptide repeat-containing protein family; Found in the gene: LotjaGi1g1v0672300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:123693802..123699505) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCCACCACCGCGCCTCACTGTGTCCAACTCGCCGGCGCCACCGTGTCAACTCGTCCGCGAAGCGCCACCGCCATCTC CTGCAAGAAGAAGGCGAACGAGTTGGCATTCAAGGAGACCAAAGATGGCTTCGTGGACTACGACAGAGGCCAGCACGAGG TCTCTGCCAGAGTCACCGGCCTCCGCAAGGACGACATCCCCGCCCACTACCGCCTCCGTGTCGCCGGAAACCGCTTCCAG ATGGACTGGACTGTGTCTGAGGTCGCCGAACAAGTCCTCTCCCTCACCCTCTATGATGACATCGACGGCCTTCTCAACCG CTGGGTTGGACGCTTCGCTCGCAAGAATTTCCCGTTCCTCATCAAGGTATCATCAAATTCTTAGGGTTTAACACTTCAAA ATCAAATGTGAATATCAAATGTAGGGTTATGCATTGAACTGAATTGCATTTTTGGAACTTCCATAGGAATTGACACAGAG AGGGTCAATTGAACACTGTAACCTAGTGTTCCAGTGGATGAAGAACCAGAGGAATTACTGTGCCAGGAATGATATATACA ACATGATGATTAGGTTGCATGCTAGGCACAATCGAATCGACCAGGCACGAGGGTTGTTTTTCGAGATGCAGGAATGGAGG TAGGTGTGTAGTTGTTGGCTTTAATCTTGTTTGAAATAGCATGTGGGTGTGTGTATGTTATTGTGTGGTATATTGTGGTT TGTAGGTGCAAACCTGATGTGGAGACTTACAATGCACTTATCAATGCGCATGGTAGAGCTGGACAATGGCGTTGGGCCAT GAATATCATGGACGACATGCTGCGTGCCGCTGTGTGTACTTAGTATTTTTCTTCCCCTATAAATCTTTAGTGAGTCAAAG TTGTTGTGATACACCAATCTTTCTTTTTTTCCTTTTACATTTCCTTCCTCTAACATAATATGAGGTTGTGGTTGAGCAAG AATTTAAAATATCATGCTTGTGTTACCAACTTGATATATATTTTTTTTTCTTCTTTGCTTTGGCCTGATATACTTTTCCA TAACATTGATACTTGAATTCTTTAGGCAGTTTACTAAGTGTAAAAAAGCATGTCTGGTGAAGGGAGAGAGAGCATGTGTA AGTGCTTTACTACTTCGCCATATTGTTTCACACTCACTTATAAGGCACGAACAGGTCCTGTTTTTGCAGGATCCAGTTTA TGATGATGCAGGCCTCTTGCAATCCGTATTCTTGATAATTTAATTAAGACTCATTTAGATTCTCCATTACATTGTGTACT TCAGGTTCCATCACTTAATACATACACATTACATTTGTTTACTTTGATGGTAGAAAACTTCTCTGACCCCCAATGCCGGC AAGTGTGAACCATATGGGTTTCGCTCTGGTCAGCATTGATTTGTTACATGCATAATATACTTATCTGCGCGCTGTACTAG TTGATTGTGAAGTTACTGTGCACATTAGAAATAAGTAGTTAGTCCTAGTGATGAGACATTTGTGTTCAGTGTGATCTTGC TAGCATTTTATTCAATTTTCTTCAGATACAATGCTGGAAATGTAAAAATTAAATACTTCGATTGTTGCTATCTTGTCTAT TAGTGCTGTTTGTGACACTACTAACATATCGTTGCAGATTCCACCAAGTCGGTCAACTTATAACAACTTGATAAATGCCT GTGGATCTAGTGGAAATTGGAAAGAAGCACTTAATGTTTGCAAGAAAATGACTGACAATGGAGTCGGGCCCGATCTCGTC ACTCACAATATTCTGTTATCTGCATTTAAAAGTGGTTCTCAGTATTCAAAAGCTTTGTCATATTTTGAACTAATGAAGGG AACTCACATTCGTCCTGACACAACAACACTTAATATTGTAATCCACTGTCTAGTGAAGCTTCGACAATATGACAAAGCCA TAGACATTTTTAATTCTATGAGGGAAAAGAAGTCAGAATGCCACCCTGATGTTGTATCATACACTAGTATCATTCACTTA TATTCTGTGAGCGGTCAGATTGAAAATTGTGAGGCTGCATTCAATATGATGCTTGCCGAAGGGATCAAACCAAGTATAGT TTCATATAATGCACTAGTGGGTGCATATGCTGCACATGGGATGGGAAAGGAAGCACTTCTAGTTTTTAATGAGATAAAAC AAAATGGTTTCCGCCCTGATATTGTATCTTATACATCTCTGCTGAATGCTTATGGAAGATCACAAAAGCCACAAAAAGCA AGGGGAGTATTTGAAATGATAAAGAGAAACAAGTTGAAGCCCAACCTTGTCAGTTACAATGCACTGATTGATGCCTATGG ATCTAATGGTTTGCTGGATGATGCAATTAAAATCTTGCGAGAAATGGAACAAGATGGTATTCAGCCAAATGTTGTCTCAA TATGCACACTCTTGGCTGCCTGTGGACGATGCAGTCAGAAGGTGAAGATTGAAACTGTGCTATCAGCAGCTCAGATGCGA GGCATTAAACTTAACACAGTTGCATATAATTCAGCTATAGGAAGCTATCTTAATGTGGGGGAGTATGACAAAGCTTTAGG CTTGTATAAATCAATGAGAAAGAAAAAAATTAAAGCTGATTCTGTTACATACACTATCTTGATAAGTGGTTCCTGTAAGA TGTCAAAATATGGTGAAGCTCTGTCTTTTATGGAAGAAATGATGCATCTAAAACTTCCTGTGTCCAAAGAGGTCTACTCA TCTATCTTATGTGCCTATAGCAAACAGGTATGTGCTTTGGTTAGAATGTGTCTAATTGATATTGTTAGAAATTTTATTTA AAACCATTCATGTGTTTTCACCGTATAGCGTAATCTTTTGGGTTAGGTAATTCTTAATATGGTACCAGAGCCTCTATGAC CAAGTGTCTAGGGTTTGATCCTTGCTTTGCCCCATCCTTTGAATAAAAAAAATGTATTTCAGCACAAGATTATTGGACTT GTGCAGTGTCCACACTAGTCTAAAGGGCTCTCGAGAGATGGGTGTGTTAGACATAAAATCTAAATCATTCATGTGCTTTC ATGCAATAGTTTAAACTTTTGGGGTAGTTGATTTACGATAGATGCATTCATAAAATTTGAGGCTTCTGTTTGTTTTCTTC ATTTCTTTTTTCTGTGATAATGTTTTAGGGCCAAATTGTAGAAGCAGAATCTACATTCAACTTGATGAAATCATCTGGTT GTAGTCCAGATGTGGTTACATATACTTCCATGCTTGACGCCTACACTGCAGCTGGTAAAATGAATTTTGAACCTCTAAAA TATGAAGATGGATTTTGGAAATGTATGCTTGAATAACAATATTTTATGATCAGAGAATTGGGAGAAAGCGTATGCACTCT TTAATGAAATGGAGGCAAATGACATCAAGCTAGATACTGTTGCATGTGCAGCTCTAATGAGAGCTTTCAATAGAGGAGGC CAGCCAGGGAGGGTCCTTAATCTGGCAGAAAGTATGAGAGAAAAAGATATTCCTTTAAGTGATACTATATTTTTTGAAAT GGTATCTGCCTGTAGCTTGTAAGTTCTGATTTGTTCTCATGTCTCCAGATAAAGCAGTTTATCTACGTGTTAAACTTGTC TTTCCATGTTTTTTTTTTTCTTGATAAGCTTTACTGAAACTTCACAAAATGCACCTTTACTGTAGTGCCTCTTCTGTTAG TCTAAGTTAAGCTAATTGATGCTGATATTTGCTTAGTATATTCCTGATGAAGAAATACTGGCACATTTTCCACCTGATCC AAAATTCTTGTGGCTATTAGTCTAATACTTATTATCATAATTTGAAGTTTATTACTTCCCGCTTTGATTAGTATTTTTGC TACTTTCGTCTTTATTCTTCAAACCAAGTTTAATAGAATTTCATATTATGCATATTTGAATATGTTGTTATCATTATTTA GAAGAAAAAGTTTTTTTTTTTCACAAATCACAAAAATATTAGGATTTTGTTAATTAAATCATTGGTGGAACTTGAAGTAG AATAGCAGGGTCTTATAATGAAACCCTAAGTTTCTAGACTATGCTATGACCTGTGGTGCTTTTGATATATTGTTCCTCAC CAAAGCTCAGAAGATCTAATGAGAACAGTGGGAAAGAAACTATAGGATAGATGCCTATTACTCAAACTTTGGTTTGATAT CCATAATTTACAGCATGATATTTTTTCTACAGTTACTGTATTTTGTTGTTATATTCCTGTCTATTGAATTTGTCTTTTGC TGCAAGATTACAAGATTGGAAGACAGCTTTTGATATGATCAAGTACATAGAGCCCTCGCTTCCGGTAATTTCATCTGGAT GTTTGAATCTGCTCCTGCATTCTTTAGGAAAGAGCGGAAGGATTGAAACTATGTTGAAGGTACCCTAATTATTGTCTCTG ATATTTATGAAAAGTTAATGTTACCTAACTCATTAAACATGATTCTCCACTATCATGATATCTCTCTTGCATTACCCTGC TTTCTTATTATCTTAATTTTTATGTGTGCACTGTGCAGTTATTCTTGAAAATGTTGGCATCGGGGGCTGATGTTAACTTC AATACTTATTCTATTTTACTGAAGAATGTTTTGTCCTCTGGAAATTGGAGGAAATATTTAGAGGTAAGATTCAGAAATAT AACATAAACGCATCTAAGTATTGATTTAACAGCTTAAACTTTTGGAAGAGTTGATTCTTGACACGTTATCAAACCTCTTT GGCCAAGGGGTACCAAGTTCAAGCCTTTCTAGACCCCATTCTTCTAATACAAAAGTTGAATTTTAGCGCTAGATTGTTCT GTACGTTGTTCTGCTTAAATCCCAAAAGGCTCTTGTGAGGGTATGTGCTAGAAAGAGAAAAACAGTTTGTGTTTTTACTT AACAATTTAAGCATTTGGAAGAATTGGTTCTGAAGAGTATCGGGTCGTTCTCTCTCACTCTCACTCACCGGCTTAAAGAT TAATGCTTACAGATTCTATGCTCAGGACTTTGGTGAGGTGCATTTTATGTATGATGCCAACTCGGTAACAATAGATTTTT AGGTTTATAAAGAGAGGTTCATAACTAAGTAACTGGAACAAATATTAGAGTTTTAACTCATCAAGTATTTGTTGAAATTA TAAGGAATTTATGGGAAAGTCGGAACAGAGAAAGAAGTGTATGTTTCATTGATAATGAGATGTTTATATAATAGGGCTAA GATTCCTAGTTATTGTCATTATCTAGGTGAAAAAACTATTGTAGGACAACTAGTATAAGCCCAGCCAATTAACACTAATA ACATAATAAGGCTCCTAAATATGTAAGAATTCTTCTATTAGAGGGTTTAGGGTTTAGGGTTTAGGGTTTATCTCTTGAGC TGATGTGTCACCATTGCCACTTTTACTAGTCCTATGGAAATTTGTGTTTTTCATGATCATATTAGATGAGTTTATTTTTC AAGTATTTCATATTGTAACAAACCATATCTGAAAAATCAAGAAAATTGAGGCAGGTACTGCAGTGGATGGAAGATGCAGG AATTCATCCATCAAATGAAATGTACCATGATATATCCTCCTTTTCGCAAAAATGCTGTGGGGCTGAAAATGCTGCCGTCA TAAAAGAAAGACTTGGTATGGATATTCATGTTGTATTGAGAATTGTCTTCTCTCTTGTTCAATTGCATGTGCTTTCATTC TTTTAATGCACTTTGCTCGTTTAA 

CDS sequence (LotjaGi1g1v0672300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCACCACCGCGCCTCACTGTGTCCAACTCGCCGGCGCCACCGTGTCAACTCGTCCGCGAAGCGCCACCGCCATCTC CTGCAAGAAGAAGGCGAACGAGTTGGCATTCAAGGAGACCAAAGATGGCTTCGTGGACTACGACAGAGGCCAGCACGAGG TCTCTGCCAGAGTCACCGGCCTCCGCAAGGACGACATCCCCGCCCACTACCGCCTCCGTGTCGCCGGAAACCGCTTCCAG ATGGACTGGACTGTGTCTGAGGTCGCCGAACAAGTCCTCTCCCTCACCCTCTATGATGACATCGACGGCCTTCTCAACCG CTGGGTTGGACGCTTCGCTCGCAAGAATTTCCCGTTCCTCATCAAGGAATTGACACAGAGAGGGTCAATTGAACACTGTA ACCTAGTGTTCCAGTGGATGAAGAACCAGAGGAATTACTGTGCCAGGAATGATATATACAACATGATGATTAGGTTGCAT GCTAGGCACAATCGAATCGACCAGGCACGAGGGTTGTTTTTCGAGATGCAGGAATGGAGGTGCAAACCTGATGTGGAGAC TTACAATGCACTTATCAATGCGCATGGTAGAGCTGGACAATGGCGTTGGGCCATGAATATCATGGACGACATGCTGCGTG CCGCTATTCCACCAAGTCGGTCAACTTATAACAACTTGATAAATGCCTGTGGATCTAGTGGAAATTGGAAAGAAGCACTT AATGTTTGCAAGAAAATGACTGACAATGGAGTCGGGCCCGATCTCGTCACTCACAATATTCTGTTATCTGCATTTAAAAG TGGTTCTCAGTATTCAAAAGCTTTGTCATATTTTGAACTAATGAAGGGAACTCACATTCGTCCTGACACAACAACACTTA ATATTGTAATCCACTGTCTAGTGAAGCTTCGACAATATGACAAAGCCATAGACATTTTTAATTCTATGAGGGAAAAGAAG TCAGAATGCCACCCTGATGTTGTATCATACACTAGTATCATTCACTTATATTCTGTGAGCGGTCAGATTGAAAATTGTGA GGCTGCATTCAATATGATGCTTGCCGAAGGGATCAAACCAAGTATAGTTTCATATAATGCACTAGTGGGTGCATATGCTG CACATGGGATGGGAAAGGAAGCACTTCTAGTTTTTAATGAGATAAAACAAAATGGTTTCCGCCCTGATATTGTATCTTAT ACATCTCTGCTGAATGCTTATGGAAGATCACAAAAGCCACAAAAAGCAAGGGGAGTATTTGAAATGATAAAGAGAAACAA GTTGAAGCCCAACCTTGTCAGTTACAATGCACTGATTGATGCCTATGGATCTAATGGTTTGCTGGATGATGCAATTAAAA TCTTGCGAGAAATGGAACAAGATGGTATTCAGCCAAATGTTGTCTCAATATGCACACTCTTGGCTGCCTGTGGACGATGC AGTCAGAAGGTGAAGATTGAAACTGTGCTATCAGCAGCTCAGATGCGAGGCATTAAACTTAACACAGTTGCATATAATTC AGCTATAGGAAGCTATCTTAATGTGGGGGAGTATGACAAAGCTTTAGGCTTGTATAAATCAATGAGAAAGAAAAAAATTA AAGCTGATTCTGTTACATACACTATCTTGATAAGTGGTTCCTGTAAGATGTCAAAATATGGTGAAGCTCTGTCTTTTATG GAAGAAATGATGCATCTAAAACTTCCTGTGTCCAAAGAGGTCTACTCATCTATCTTATGTGCCTATAGCAAACAGGGCCA AATTGTAGAAGCAGAATCTACATTCAACTTGATGAAATCATCTGGTTGTAGTCCAGATGTGGTTACATATACTTCCATGC TTGACGCCTACACTGCAGCTGAGAATTGGGAGAAAGCGTATGCACTCTTTAATGAAATGGAGGCAAATGACATCAAGCTA GATACTGTTGCATGTGCAGCTCTAATGAGAGCTTTCAATAGAGGAGGCCAGCCAGGGAGGGTCCTTAATCTGGCAGAAAG TATGAGAGAAAAAGATATTCCTTTAAGTGATACTATATTTTTTGAAATGGTATCTGCCTGTAGCTTATTACAAGATTGGA AGACAGCTTTTGATATGATCAAGTACATAGAGCCCTCGCTTCCGGTAATTTCATCTGGATGTTTGAATCTGCTCCTGCAT TCTTTAGGAAAGAGCGGAAGGATTGAAACTATGTTGAAGTTATTCTTGAAAATGTTGGCATCGGGGGCTGATGTTAACTT CAATACTTATTCTATTTTACTGAAGAATGTTTTGTCCTCTGGAAATTGGAGGAAATATTTAGAGGTACTGCAGTGGATGG AAGATGCAGGAATTCATCCATCAAATGAAATGTACCATGATATATCCTCCTTTTCGCAAAAATGCTGTGGGGCTGAAAAT GCTGCCGTCATAAAAGAAAGACTTGGTATGGATATTCATGTTGTATTGAGAATTGTCTTCTCTCTTGTTCAATTGCATGT GCTTTCATTCTTTTAA 

Protein sequence (LotjaGi1g1v0672300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATTAPHCVQLAGATVSTRPRSATAISCKKKANELAFKETKDGFVDYDRGQHEVSARVTGLRKDDIPAHYRLRVAGNRFQ MDWTVSEVAEQVLSLTLYDDIDGLLNRWVGRFARKNFPFLIKELTQRGSIEHCNLVFQWMKNQRNYCARNDIYNMMIRLH ARHNRIDQARGLFFEMQEWRCKPDVETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEAL NVCKKMTDNGVGPDLVTHNILLSAFKSGSQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIDIFNSMREKK SECHPDVVSYTSIIHLYSVSGQIENCEAAFNMMLAEGIKPSIVSYNALVGAYAAHGMGKEALLVFNEIKQNGFRPDIVSY TSLLNAYGRSQKPQKARGVFEMIKRNKLKPNLVSYNALIDAYGSNGLLDDAIKILREMEQDGIQPNVVSICTLLAACGRC SQKVKIETVLSAAQMRGIKLNTVAYNSAIGSYLNVGEYDKALGLYKSMRKKKIKADSVTYTILISGSCKMSKYGEALSFM EEMMHLKLPVSKEVYSSILCAYSKQGQIVEAESTFNLMKSSGCSPDVVTYTSMLDAYTAAENWEKAYALFNEMEANDIKL DTVACAALMRAFNRGGQPGRVLNLAESMREKDIPLSDTIFFEMVSACSLLQDWKTAFDMIKYIEPSLPVISSGCLNLLLH SLGKSGRIETMLKLFLKMLASGADVNFNTYSILLKNVLSSGNWRKYLEVLQWMEDAGIHPSNEMYHDISSFSQKCCGAEN AAVIKERLGMDIHVVLRIVFSLVQLHVLSFF 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 85 249 165 1.7E-32
PANTHER 120 254 135 4.8E-147
ProSiteProfiles 149 183 35 10.249
TIGRFAM 152 185 34 3.0E-8
Pfam 152 181 30 6.0E-5
Pfam 183 230 48 8.0E-12
ProSiteProfiles 184 218 35 11.959
SUPERFAMILY 184 317 134 3.67E-5
TIGRFAM 187 219 33 2.2E-6
ProSiteProfiles 219 253 35 12.014
TIGRFAM 222 254 33 1.1E-7
Pfam 242 300 59 1.9E-6
PANTHER 250 431 182 4.8E-147
ProSiteProfiles 254 288 35 9.449
TIGRFAM 256 290 35 8.5E-5
Gene3D 266 423 158 4.8E-44
ProSiteProfiles 289 323 35 9.909
SUPERFAMILY 289 665 377 2.66E-7
TIGRFAM 292 321 30 1.6E-7
Pfam 324 372 49 7.3E-9
ProSiteProfiles 326 360 35 10.819
TIGRFAM 328 361 34 3.1E-5
PANTHER 357 533 177 4.8E-147
ProSiteProfiles 361 395 35 11.772
TIGRFAM 363 397 35 4.0E-7
Pfam 384 445 62 3.2E-16
ProSiteProfiles 396 430 35 11.378
TIGRFAM 398 431 34 1.6E-6
Gene3D 424 489 66 6.9E-15
ProSiteProfiles 431 465 35 13.746
TIGRFAM 433 467 35 8.4E-10
Pfam 448 478 31 7.2E-4
ProSiteProfiles 466 500 35 6.018
Gene3D 490 567 78 3.8E-18
Pfam 501 549 49 3.0E-14
ProSiteProfiles 501 535 35 10.654
TIGRFAM 503 536 34 1.2E-6
PANTHER 525 703 179 4.8E-147
ProSiteProfiles 536 570 35 10.348
TIGRFAM 538 568 31 2.4E-5
Gene3D 569 686 118 1.1E-26
ProSiteProfiles 571 605 35 11.29
TIGRFAM 574 607 34 1.8E-9
Pfam 574 617 44 1.1E-11
ProSiteProfiles 606 640 35 11.608
TIGRFAM 608 642 35 2.8E-8
Pfam 629 673 45 0.0011
ProSiteProfiles 641 675 35 8.605
Gene3D 687 814 128 2.3E-13
ProSiteProfiles 711 745 35 8.616
PANTHER 715 785 71 4.8E-147
TIGRFAM 716 742 27 5.5E-4
Pfam 734 782 49 0.003
ProSiteProfiles 746 780 35 9.405

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0672300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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