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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0672300 |
| Transcript ID | LotjaGi1g1v0672300.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT2G41720.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720; TrEMBL-Plants: tr|I1JNC4|I1JNC4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0672300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:123694805..123699505) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCACCACCGCGCCTCACTGTGTCCAACTCGCCGGCGCCACCGTGTCAACTCGTCCGCGAAGCGCCACCGCCATCTC CTGCAAGAAGAAGGCGAACGAGTTGGCATTCAAGGAGACCAAAGATGGCTTCGTGGACTACGACAGAGGCCAGCACGAGG TCTCTGCCAGAGTCACCGGCCTCCGCAAGGACGACATCCCCGCCCACTACCGCCTCCGTGTCGCCGGAAACCGCTTCCAG ATGGACTGGACTGTGTCTGAGGTCGCCGAACAAGTCCTCTCCCTCACCCTCTATGATGACATCGACGGCCTTCTCAACCG CTGGGTTGGACGCTTCGCTCGCAAGAATTTCCCGTTCCTCATCAAGGTATCATCAAATTCTTAGGGTTTAACACTTCAAA ATCAAATGTGAATATCAAATGTAGGGTTATGCATTGAACTGAATTGCATTTTTGGAACTTCCATAGGAATTGACACAGAG AGGGTCAATTGAACACTGTAACCTAGTGTTCCAGTGGATGAAGAACCAGAGGAATTACTGTGCCAGGAATGATATATACA ACATGATGATTAGGTTGCATGCTAGGCACAATCGAATCGACCAGGCACGAGGGTTGTTTTTCGAGATGCAGGAATGGAGG TAGGTGTGTAGTTGTTGGCTTTAATCTTGTTTGAAATAGCATGTGGGTGTGTGTATGTTATTGTGTGGTATATTGTGGTT TGTAGGTGCAAACCTGATGTGGAGACTTACAATGCACTTATCAATGCGCATGGTAGAGCTGGACAATGGCGTTGGGCCAT GAATATCATGGACGACATGCTGCGTGCCGCTGTGTGTACTTAGTATTTTTCTTCCCCTATAAATCTTTAGTGAGTCAAAG TTGTTGTGATACACCAATCTTTCTTTTTTTCCTTTTACATTTCCTTCCTCTAACATAATATGAGGTTGTGGTTGAGCAAG AATTTAAAATATCATGCTTGTGTTACCAACTTGATATATATTTTTTTTTCTTCTTTGCTTTGGCCTGATATACTTTTCCA TAACATTGATACTTGAATTCTTTAGGCAGTTTACTAAGTGTAAAAAAGCATGTCTGGTGAAGGGAGAGAGAGCATGTGTA AGTGCTTTACTACTTCGCCATATTGTTTCACACTCACTTATAAGGCACGAACAGGTCCTGTTTTTGCAGGATCCAGTTTA TGATGATGCAGGCCTCTTGCAATCCGTATTCTTGATAATTTAATTAAGACTCATTTAGATTCTCCATTACATTGTGTACT TCAGGTTCCATCACTTAATACATACACATTACATTTGTTTACTTTGATGGTAGAAAACTTCTCTGACCCCCAATGCCGGC AAGTGTGAACCATATGGGTTTCGCTCTGGTCAGCATTGATTTGTTACATGCATAATATACTTATCTGCGCGCTGTACTAG TTGATTGTGAAGTTACTGTGCACATTAGAAATAAGTAGTTAGTCCTAGTGATGAGACATTTGTGTTCAGTGTGATCTTGC TAGCATTTTATTCAATTTTCTTCAGATACAATGCTGGAAATGTAAAAATTAAATACTTCGATTGTTGCTATCTTGTCTAT TAGTGCTGTTTGTGACACTACTAACATATCGTTGCAGATTCCACCAAGTCGGTCAACTTATAACAACTTGATAAATGCCT GTGGATCTAGTGGAAATTGGAAAGAAGCACTTAATGTTTGCAAGAAAATGACTGACAATGGAGTCGGGCCCGATCTCGTC ACTCACAATATTCTGTTATCTGCATTTAAAAGTGGTTCTCAGTATTCAAAAGCTTTGTCATATTTTGAACTAATGAAGGG AACTCACATTCGTCCTGACACAACAACACTTAATATTGTAATCCACTGTCTAGTGAAGCTTCGACAATATGACAAAGCCA TAGACATTTTTAATTCTATGAGGGAAAAGAAGTCAGAATGCCACCCTGATGTTGTATCATACACTAGTATCATTCACTTA TATTCTGTGAGCGGTCAGATTGAAAATTGTGAGGCTGCATTCAATATGATGCTTGCCGAAGGGATCAAACCAAGTATAGT TTCATATAATGCACTAGTGGGTGCATATGCTGCACATGGGATGGGAAAGGAAGCACTTCTAGTTTTTAATGAGATAAAAC AAAATGGTTTCCGCCCTGATATTGTATCTTATACATCTCTGCTGAATGCTTATGGAAGATCACAAAAGCCACAAAAAGCA AGGGGAGTATTTGAAATGATAAAGAGAAACAAGTTGAAGCCCAACCTTGTCAGTTACAATGCACTGATTGATGCCTATGG ATCTAATGGTTTGCTGGATGATGCAATTAAAATCTTGCGAGAAATGGAACAAGATGGTATTCAGCCAAATGTTGTCTCAA TATGCACACTCTTGGCTGCCTGTGGACGATGCAGTCAGAAGGTGAAGATTGAAACTGTGCTATCAGCAGCTCAGATGCGA GGCATTAAACTTAACACAGTTGCATATAATTCAGCTATAGGAAGCTATCTTAATGTGGGGGAGTATGACAAAGCTTTAGG CTTGTATAAATCAATGAGAAAGAAAAAAATTAAAGCTGATTCTGTTACATACACTATCTTGATAAGTGGTTCCTGTAAGA TGTCAAAATATGGTGAAGCTCTGTCTTTTATGGAAGAAATGATGCATCTAAAACTTCCTGTGTCCAAAGAGGTCTACTCA TCTATCTTATGTGCCTATAGCAAACAGGTATGTGCTTTGGTTAGAATGTGTCTAATTGATATTGTTAGAAATTTTATTTA AAACCATTCATGTGTTTTCACCGTATAGCGTAATCTTTTGGGTTAGGTAATTCTTAATATGGTACCAGAGCCTCTATGAC CAAGTGTCTAGGGTTTGATCCTTGCTTTGCCCCATCCTTTGAATAAAAAAAATGTATTTCAGCACAAGATTATTGGACTT GTGCAGTGTCCACACTAGTCTAAAGGGCTCTCGAGAGATGGGTGTGTTAGACATAAAATCTAAATCATTCATGTGCTTTC ATGCAATAGTTTAAACTTTTGGGGTAGTTGATTTACGATAGATGCATTCATAAAATTTGAGGCTTCTGTTTGTTTTCTTC ATTTCTTTTTTCTGTGATAATGTTTTAGGGCCAAATTGTAGAAGCAGAATCTACATTCAACTTGATGAAATCATCTGGTT GTAGTCCAGATGTGGTTACATATACTTCCATGCTTGACGCCTACACTGCAGCTGGTAAAATGAATTTTGAACCTCTAAAA TATGAAGATGGATTTTGGAAATGTATGCTTGAATAACAATATTTTATGATCAGAGAATTGGGAGAAAGCGTATGCACTCT TTAATGAAATGGAGGCAAATGACATCAAGCTAGATACTGTTGCATGTGCAGCTCTAATGAGAGCTTTCAATAGAGGAGGC CAGCCAGGGAGGGTCCTTAATCTGGCAGAAAGTATGAGAGAAAAAGATATTCCTTTAAGTGATACTATATTTTTTGAAAT GGTATCTGCCTGTAGCTTGTAAGTTCTGATTTGTTCTCATGTCTCCAGATAAAGCAGTTTATCTACGTGTTAAACTTGTC TTTCCATGTTTTTTTTTTTCTTGATAAGCTTTACTGAAACTTCACAAAATGCACCTTTACTGTAGTGCCTCTTCTGTTAG TCTAAGTTAAGCTAATTGATGCTGATATTTGCTTAGTATATTCCTGATGAAGAAATACTGGCACATTTTCCACCTGATCC AAAATTCTTGTGGCTATTAGTCTAATACTTATTATCATAATTTGAAGTTTATTACTTCCCGCTTTGATTAGTATTTTTGC TACTTTCGTCTTTATTCTTCAAACCAAGTTTAATAGAATTTCATATTATGCATATTTGAATATGTTGTTATCATTATTTA GAAGAAAAAGTTTTTTTTTTTCACAAATCACAAAAATATTAGGATTTTGTTAATTAAATCATTGGTGGAACTTGAAGTAG AATAGCAGGGTCTTATAATGAAACCCTAAGTTTCTAGACTATGCTATGACCTGTGGTGCTTTTGATATATTGTTCCTCAC CAAAGCTCAGAAGATCTAATGAGAACAGTGGGAAAGAAACTATAGGATAGATGCCTATTACTCAAACTTTGGTTTGATAT CCATAATTTACAGCATGATATTTTTTCTACAGTTACTGTATTTTGTTGTTATATTCCTGTCTATTGAATTTGTCTTTTGC TGCAAGATTACAAGATTGGAAGACAGCTTTTGATATGATCAAGTACATAGAGCCCTCGCTTCCGGTAATTTCATCTGGAT GTTTGAATCTGCTCCTGCATTCTTTAGGAAAGAGCGGAAGGATTGAAACTATGTTGAAGGTACCCTAATTATTGTCTCTG ATATTTATGAAAAGTTAATGTTACCTAACTCATTAAACATGATTCTCCACTATCATGATATCTCTCTTGCATTACCCTGC TTTCTTATTATCTTAATTTTTATGTGTGCACTGTGCAGTTATTCTTGAAAATGTTGGCATCGGGGGCTGATGTTAACTTC AATACTTATTCTATTTTACTGAAGAATGTTTTGTCCTCTGGAAATTGGAGGAAATATTTAGAGGTAAGATTCAGAAATAT AACATAAACGCATCTAAGTATTGATTTAACAGCTTAAACTTTTGGAAGAGTTGATTCTTGA
CDS sequence (LotjaGi1g1v0672300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACCACCGCGCCTCACTGTGTCCAACTCGCCGGCGCCACCGTGTCAACTCGTCCGCGAAGCGCCACCGCCATCTC CTGCAAGAAGAAGGCGAACGAGTTGGCATTCAAGGAGACCAAAGATGGCTTCGTGGACTACGACAGAGGCCAGCACGAGG TCTCTGCCAGAGTCACCGGCCTCCGCAAGGACGACATCCCCGCCCACTACCGCCTCCGTGTCGCCGGAAACCGCTTCCAG ATGGACTGGACTGTGTCTGAGGTCGCCGAACAAGTCCTCTCCCTCACCCTCTATGATGACATCGACGGCCTTCTCAACCG CTGGGTTGGACGCTTCGCTCGCAAGAATTTCCCGTTCCTCATCAAGGAATTGACACAGAGAGGGTCAATTGAACACTGTA ACCTAGTGTTCCAGTGGATGAAGAACCAGAGGAATTACTGTGCCAGGAATGATATATACAACATGATGATTAGGTTGCAT GCTAGGCACAATCGAATCGACCAGGCACGAGGGTTGTTTTTCGAGATGCAGGAATGGAGGTGCAAACCTGATGTGGAGAC TTACAATGCACTTATCAATGCGCATGGTAGAGCTGGACAATGGCGTTGGGCCATGAATATCATGGACGACATGCTGCGTG CCGCTATTCCACCAAGTCGGTCAACTTATAACAACTTGATAAATGCCTGTGGATCTAGTGGAAATTGGAAAGAAGCACTT AATGTTTGCAAGAAAATGACTGACAATGGAGTCGGGCCCGATCTCGTCACTCACAATATTCTGTTATCTGCATTTAAAAG TGGTTCTCAGTATTCAAAAGCTTTGTCATATTTTGAACTAATGAAGGGAACTCACATTCGTCCTGACACAACAACACTTA ATATTGTAATCCACTGTCTAGTGAAGCTTCGACAATATGACAAAGCCATAGACATTTTTAATTCTATGAGGGAAAAGAAG TCAGAATGCCACCCTGATGTTGTATCATACACTAGTATCATTCACTTATATTCTGTGAGCGGTCAGATTGAAAATTGTGA GGCTGCATTCAATATGATGCTTGCCGAAGGGATCAAACCAAGTATAGTTTCATATAATGCACTAGTGGGTGCATATGCTG CACATGGGATGGGAAAGGAAGCACTTCTAGTTTTTAATGAGATAAAACAAAATGGTTTCCGCCCTGATATTGTATCTTAT ACATCTCTGCTGAATGCTTATGGAAGATCACAAAAGCCACAAAAAGCAAGGGGAGTATTTGAAATGATAAAGAGAAACAA GTTGAAGCCCAACCTTGTCAGTTACAATGCACTGATTGATGCCTATGGATCTAATGGTTTGCTGGATGATGCAATTAAAA TCTTGCGAGAAATGGAACAAGATGGTATTCAGCCAAATGTTGTCTCAATATGCACACTCTTGGCTGCCTGTGGACGATGC AGTCAGAAGGTGAAGATTGAAACTGTGCTATCAGCAGCTCAGATGCGAGGCATTAAACTTAACACAGTTGCATATAATTC AGCTATAGGAAGCTATCTTAATGTGGGGGAGTATGACAAAGCTTTAGGCTTGTATAAATCAATGAGAAAGAAAAAAATTA AAGCTGATTCTGTTACATACACTATCTTGATAAGTGGTTCCTGTAAGATGTCAAAATATGGTGAAGCTCTGTCTTTTATG GAAGAAATGATGCATCTAAAACTTCCTGTGTCCAAAGAGGTCTACTCATCTATCTTATGTGCCTATAGCAAACAGGGCCA AATTGTAGAAGCAGAATCTACATTCAACTTGATGAAATCATCTGGTTGTAGTCCAGATGTGGTTACATATACTTCCATGC TTGACGCCTACACTGCAGCTGAGAATTGGGAGAAAGCGTATGCACTCTTTAATGAAATGGAGGCAAATGACATCAAGCTA GATACTGTTGCATGTGCAGCTCTAATGAGAGCTTTCAATAGAGGAGGCCAGCCAGGGAGGGTCCTTAATCTGGCAGAAAG TATGAGAGAAAAAGATATTCCTTTAAGTGATACTATATTTTTTGAAATGGTATCTGCCTGTAGCTTATTACAAGATTGGA AGACAGCTTTTGATATGATCAAGTACATAGAGCCCTCGCTTCCGGTAATTTCATCTGGATGTTTGAATCTGCTCCTGCAT TCTTTAGGAAAGAGCGGAAGGATTGAAACTATGTTGAAGTTATTCTTGAAAATGTTGGCATCGGGGGCTGATGTTAACTT CAATACTTATTCTATTTTACTGAAGAATGTTTTGTCCTCTGGAAATTGGAGGAAATATTTAGAGGTAAGATTCAGAAATA TAACATAA
Protein sequence (LotjaGi1g1v0672300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATTAPHCVQLAGATVSTRPRSATAISCKKKANELAFKETKDGFVDYDRGQHEVSARVTGLRKDDIPAHYRLRVAGNRFQ MDWTVSEVAEQVLSLTLYDDIDGLLNRWVGRFARKNFPFLIKELTQRGSIEHCNLVFQWMKNQRNYCARNDIYNMMIRLH ARHNRIDQARGLFFEMQEWRCKPDVETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEAL NVCKKMTDNGVGPDLVTHNILLSAFKSGSQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIDIFNSMREKK SECHPDVVSYTSIIHLYSVSGQIENCEAAFNMMLAEGIKPSIVSYNALVGAYAAHGMGKEALLVFNEIKQNGFRPDIVSY TSLLNAYGRSQKPQKARGVFEMIKRNKLKPNLVSYNALIDAYGSNGLLDDAIKILREMEQDGIQPNVVSICTLLAACGRC SQKVKIETVLSAAQMRGIKLNTVAYNSAIGSYLNVGEYDKALGLYKSMRKKKIKADSVTYTILISGSCKMSKYGEALSFM EEMMHLKLPVSKEVYSSILCAYSKQGQIVEAESTFNLMKSSGCSPDVVTYTSMLDAYTAAENWEKAYALFNEMEANDIKL DTVACAALMRAFNRGGQPGRVLNLAESMREKDIPLSDTIFFEMVSACSLLQDWKTAFDMIKYIEPSLPVISSGCLNLLLH SLGKSGRIETMLKLFLKMLASGADVNFNTYSILLKNVLSSGNWRKYLEVRFRNIT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 115 | 284 | 170 | 1.0E-41 | ||
| PANTHER | 120 | 254 | 135 | 5.0E-141 | – | |
| ProSiteProfiles | 149 | 183 | 35 | 10.249 | ||
| Pfam | 152 | 181 | 30 | 5.5E-5 | ||
| TIGRFAM | 152 | 185 | 34 | 2.8E-8 | ||
| Pfam | 183 | 230 | 48 | 7.4E-12 | ||
| ProSiteProfiles | 184 | 218 | 35 | 11.959 | ||
| TIGRFAM | 187 | 219 | 33 | 2.0E-6 | ||
| ProSiteProfiles | 219 | 253 | 35 | 12.014 | ||
| TIGRFAM | 222 | 254 | 33 | 9.8E-8 | ||
| Pfam | 242 | 300 | 59 | 1.8E-6 | ||
| PANTHER | 251 | 431 | 181 | 5.0E-141 | – | |
| ProSiteProfiles | 254 | 288 | 35 | 9.449 | ||
| TIGRFAM | 256 | 290 | 35 | 7.8E-5 | ||
| ProSiteProfiles | 289 | 323 | 35 | 9.909 | ||
| SUPERFAMILY | 289 | 665 | 377 | 8.22E-8 | ||
| TIGRFAM | 292 | 321 | 30 | 1.5E-7 | ||
| Gene3D | 300 | 412 | 113 | 6.0E-32 | ||
| Pfam | 324 | 372 | 49 | 6.7E-9 | ||
| ProSiteProfiles | 326 | 360 | 35 | 10.819 | ||
| TIGRFAM | 328 | 361 | 34 | 2.8E-5 | ||
| PANTHER | 358 | 533 | 176 | 5.0E-141 | – | |
| ProSiteProfiles | 361 | 395 | 35 | 11.772 | ||
| TIGRFAM | 363 | 397 | 35 | 3.7E-7 | ||
| Pfam | 384 | 445 | 62 | 2.9E-16 | ||
| ProSiteProfiles | 396 | 430 | 35 | 11.378 | ||
| TIGRFAM | 398 | 431 | 34 | 1.5E-6 | ||
| Gene3D | 413 | 585 | 173 | 6.6E-42 | ||
| ProSiteProfiles | 431 | 465 | 35 | 13.746 | ||
| TIGRFAM | 433 | 467 | 35 | 7.8E-10 | ||
| Pfam | 448 | 478 | 31 | 6.7E-4 | ||
| ProSiteProfiles | 466 | 500 | 35 | 6.018 | ||
| Pfam | 501 | 549 | 49 | 2.8E-14 | ||
| ProSiteProfiles | 501 | 535 | 35 | 10.654 | ||
| TIGRFAM | 503 | 536 | 34 | 1.1E-6 | ||
| PANTHER | 530 | 704 | 175 | 5.0E-141 | – | |
| ProSiteProfiles | 536 | 570 | 35 | 10.348 | ||
| TIGRFAM | 538 | 568 | 31 | 2.3E-5 | ||
| ProSiteProfiles | 571 | 605 | 35 | 11.29 | ||
| TIGRFAM | 574 | 607 | 34 | 1.7E-9 | ||
| Pfam | 574 | 617 | 44 | 1.1E-11 | ||
| Gene3D | 586 | 714 | 129 | 1.4E-26 | ||
| ProSiteProfiles | 606 | 640 | 35 | 11.608 | ||
| TIGRFAM | 608 | 642 | 35 | 2.6E-8 | ||
| Pfam | 629 | 673 | 45 | 0.001 | ||
| ProSiteProfiles | 641 | 675 | 35 | 8.605 | ||
| ProSiteProfiles | 711 | 745 | 35 | 8.616 | ||
| Gene3D | 715 | 773 | 59 | 3.7E-5 | ||
| TIGRFAM | 716 | 742 | 27 | 5.1E-4 | ||
| Pfam | 716 | 742 | 27 | 0.011 | ||
| ProSiteProfiles | 746 | 775 | 30 | 6.106 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0672300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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