Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0672300 |
| Transcript ID | LotjaGi1g1v0672300.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT2G41720.2 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720; TrEMBL-Plants: tr|I1JNC4|I1JNC4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0672300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:123694827..123697921) extracted from Lotus japonicus Gifu genome v1.2.
TTGCTATCTTGTCTATTAGTGCTGTTTGTGACACTACTAACATATCGTTGCAGATTCCACCAAGTCGGTCAACTTATAAC AACTTGATAAATGCCTGTGGATCTAGTGGAAATTGGAAAGAAGCACTTAATGTTTGCAAGAAAATGACTGACAATGGAGT CGGGCCCGATCTCGTCACTCACAATATTCTGTTATCTGCATTTAAAAGTGGTTCTCAGTATTCAAAAGCTTTGTCATATT TTGAACTAATGAAGGGAACTCACATTCGTCCTGACACAACAACACTTAATATTGTAATCCACTGTCTAGTGAAGCTTCGA CAATATGACAAAGCCATAGACATTTTTAATTCTATGAGGGAAAAGAAGTCAGAATGCCACCCTGATGTTGTATCATACAC TAGTATCATTCACTTATATTCTGTGAGCGGTCAGATTGAAAATTGTGAGGCTGCATTCAATATGATGCTTGCCGAAGGGA TCAAACCAAGTATAGTTTCATATAATGCACTAGTGGGTGCATATGCTGCACATGGGATGGGAAAGGAAGCACTTCTAGTT TTTAATGAGATAAAACAAAATGGTTTCCGCCCTGATATTGTATCTTATACATCTCTGCTGAATGCTTATGGAAGATCACA AAAGCCACAAAAAGCAAGGGGAGTATTTGAAATGATAAAGAGAAACAAGTTGAAGCCCAACCTTGTCAGTTACAATGCAC TGATTGATGCCTATGGATCTAATGGTTTGCTGGATGATGCAATTAAAATCTTGCGAGAAATGGAACAAGATGGTATTCAG CCAAATGTTGTCTCAATATGCACACTCTTGGCTGCCTGTGGACGATGCAGTCAGAAGGTGAAGATTGAAACTGTGCTATC AGCAGCTCAGATGCGAGGCATTAAACTTAACACAGTTGCATATAATTCAGCTATAGGAAGCTATCTTAATGTGGGGGAGT ATGACAAAGCTTTAGGCTTGTATAAATCAATGAGAAAGAAAAAAATTAAAGCTGATTCTGTTACATACACTATCTTGATA AGTGGTTCCTGTAAGATGTCAAAATATGGTGAAGCTCTGTCTTTTATGGAAGAAATGATGCATCTAAAACTTCCTGTGTC CAAAGAGGTCTACTCATCTATCTTATGTGCCTATAGCAAACAGGTATGTGCTTTGGTTAGAATGTGTCTAATTGATATTG TTAGAAATTTTATTTAAAACCATTCATGTGTTTTCACCGTATAGCGTAATCTTTTGGGTTAGGTAATTCTTAATATGGTA CCAGAGCCTCTATGACCAAGTGTCTAGGGTTTGATCCTTGCTTTGCCCCATCCTTTGAATAAAAAAAATGTATTTCAGCA CAAGATTATTGGACTTGTGCAGTGTCCACACTAGTCTAAAGGGCTCTCGAGAGATGGGTGTGTTAGACATAAAATCTAAA TCATTCATGTGCTTTCATGCAATAGTTTAAACTTTTGGGGTAGTTGATTTACGATAGATGCATTCATAAAATTTGAGGCT TCTGTTTGTTTTCTTCATTTCTTTTTTCTGTGATAATGTTTTAGGGCCAAATTGTAGAAGCAGAATCTACATTCAACTTG ATGAAATCATCTGGTTGTAGTCCAGATGTGGTTACATATACTTCCATGCTTGACGCCTACACTGCAGCTGGTAAAATGAA TTTTGAACCTCTAAAATATGAAGATGGATTTTGGAAATGTATGCTTGAATAACAATATTTTATGATCAGAGAATTGGGAG AAAGCGTATGCACTCTTTAATGAAATGGAGGCAAATGACATCAAGCTAGATACTGTTGCATGTGCAGCTCTAATGAGAGC TTTCAATAGAGGAGGCCAGCCAGGGAGGGTCCTTAATCTGGCAGAAAGTATGAGAGAAAAAGATATTCCTTTAAGTGATA CTATATTTTTTGAAATGGTATCTGCCTGTAGCTTGTAAGTTCTGATTTGTTCTCATGTCTCCAGATAAAGCAGTTTATCT ACGTGTTAAACTTGTCTTTCCATGTTTTTTTTTTTCTTGATAAGCTTTACTGAAACTTCACAAAATGCACCTTTACTGTA GTGCCTCTTCTGTTAGTCTAAGTTAAGCTAATTGATGCTGATATTTGCTTAGTATATTCCTGATGAAGAAATACTGGCAC ATTTTCCACCTGATCCAAAATTCTTGTGGCTATTAGTCTAATACTTATTATCATAATTTGAAGTTTATTACTTCCCGCTT TGATTAGTATTTTTGCTACTTTCGTCTTTATTCTTCAAACCAAGTTTAATAGAATTTCATATTATGCATATTTGAATATG TTGTTATCATTATTTAGAAGAAAAAGTTTTTTTTTTTCACAAATCACAAAAATATTAGGATTTTGTTAATTAAATCATTG GTGGAACTTGAAGTAGAATAGCAGGGTCTTATAATGAAACCCTAAGTTTCTAGACTATGCTATGACCTGTGGTGCTTTTG ATATATTGTTCCTCACCAAAGCTCAGAAGATCTAATGAGAACAGTGGGAAAGAAACTATAGGATAGATGCCTATTACTCA AACTTTGGTTTGATATCCATAATTTACAGCATGATATTTTTTCTACAGTTACTGTATTTTGTTGTTATATTCCTGTCTAT TGAATTTGTCTTTTGCTGCAAGATTACAAGATTGGAAGACAGCTTTTGATATGATCAAGTACATAGAGCCCTCGCTTCCG GTAATTTCATCTGGATGTTTGAATCTGCTCCTGCATTCTTTAGGAAAGAGCGGAAGGATTGAAACTATGTTGAAGGTACC CTAATTATTGTCTCTGATATTTATGAAAAGTTAATGTTACCTAACTCATTAAACATGATTCTCCACTATCATGATATCTC TCTTGCATTACCCTGCTTTCTTATTATCTTAATTTTTATGTGTGCACTGTGCAGTTATTCTTGAAAATGTTGGCATCGGG GGCTGATGTTAACTTCAATACTTATTCTATTTTACTGAAGAATGTTTTGTCCTCTGGAAATTGGAGGAAATATTTAGAGG TAAGATTCAGAAATATAACATAAACGCATCTAAGTATTGATTTAACAGCTTAAAC
CDS sequence (LotjaGi1g1v0672300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGACAATGGAGTCGGGCCCGATCTCGTCACTCACAATATTCTGTTATCTGCATTTAAAAGTGGTTCTCAGTATTC AAAAGCTTTGTCATATTTTGAACTAATGAAGGGAACTCACATTCGTCCTGACACAACAACACTTAATATTGTAATCCACT GTCTAGTGAAGCTTCGACAATATGACAAAGCCATAGACATTTTTAATTCTATGAGGGAAAAGAAGTCAGAATGCCACCCT GATGTTGTATCATACACTAGTATCATTCACTTATATTCTGTGAGCGGTCAGATTGAAAATTGTGAGGCTGCATTCAATAT GATGCTTGCCGAAGGGATCAAACCAAGTATAGTTTCATATAATGCACTAGTGGGTGCATATGCTGCACATGGGATGGGAA AGGAAGCACTTCTAGTTTTTAATGAGATAAAACAAAATGGTTTCCGCCCTGATATTGTATCTTATACATCTCTGCTGAAT GCTTATGGAAGATCACAAAAGCCACAAAAAGCAAGGGGAGTATTTGAAATGATAAAGAGAAACAAGTTGAAGCCCAACCT TGTCAGTTACAATGCACTGATTGATGCCTATGGATCTAATGGTTTGCTGGATGATGCAATTAAAATCTTGCGAGAAATGG AACAAGATGGTATTCAGCCAAATGTTGTCTCAATATGCACACTCTTGGCTGCCTGTGGACGATGCAGTCAGAAGGTGAAG ATTGAAACTGTGCTATCAGCAGCTCAGATGCGAGGCATTAAACTTAACACAGTTGCATATAATTCAGCTATAGGAAGCTA TCTTAATGTGGGGGAGTATGACAAAGCTTTAGGCTTGTATAAATCAATGAGAAAGAAAAAAATTAAAGCTGATTCTGTTA CATACACTATCTTGATAAGTGGTTCCTGTAAGATGTCAAAATATGGTGAAGCTCTGTCTTTTATGGAAGAAATGATGCAT CTAAAACTTCCTGTGTCCAAAGAGGTCTACTCATCTATCTTATGTGCCTATAGCAAACAGGGCCAAATTGTAGAAGCAGA ATCTACATTCAACTTGATGAAATCATCTGGTTGTAGTCCAGATGTGGTTACATATACTTCCATGCTTGACGCCTACACTG CAGCTGAGAATTGGGAGAAAGCGTATGCACTCTTTAATGAAATGGAGGCAAATGACATCAAGCTAGATACTGTTGCATGT GCAGCTCTAATGAGAGCTTTCAATAGAGGAGGCCAGCCAGGGAGGGTCCTTAATCTGGCAGAAAGTATGAGAGAAAAAGA TATTCCTTTAAGTGATACTATATTTTTTGAAATGGTATCTGCCTGTAGCTTATTACAAGATTGGAAGACAGCTTTTGATA TGATCAAGTACATAGAGCCCTCGCTTCCGGTAATTTCATCTGGATGTTTGAATCTGCTCCTGCATTCTTTAGGAAAGAGC GGAAGGATTGAAACTATGTTGAAGTTATTCTTGAAAATGTTGGCATCGGGGGCTGATGTTAACTTCAATACTTATTCTAT TTTACTGAAGAATGTTTTGTCCTCTGGAAATTGGAGGAAATATTTAGAGGTAAGATTCAGAAATATAACATAA
Protein sequence (LotjaGi1g1v0672300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTDNGVGPDLVTHNILLSAFKSGSQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIDIFNSMREKKSECHP DVVSYTSIIHLYSVSGQIENCEAAFNMMLAEGIKPSIVSYNALVGAYAAHGMGKEALLVFNEIKQNGFRPDIVSYTSLLN AYGRSQKPQKARGVFEMIKRNKLKPNLVSYNALIDAYGSNGLLDDAIKILREMEQDGIQPNVVSICTLLAACGRCSQKVK IETVLSAAQMRGIKLNTVAYNSAIGSYLNVGEYDKALGLYKSMRKKKIKADSVTYTILISGSCKMSKYGEALSFMEEMMH LKLPVSKEVYSSILCAYSKQGQIVEAESTFNLMKSSGCSPDVVTYTSMLDAYTAAENWEKAYALFNEMEANDIKLDTVAC AALMRAFNRGGQPGRVLNLAESMREKDIPLSDTIFFEMVSACSLLQDWKTAFDMIKYIEPSLPVISSGCLNLLLHSLGKS GRIETMLKLFLKMLASGADVNFNTYSILLKNVLSSGNWRKYLEVRFRNIT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 55 | 55 | 1.2E-5 | ||
| Gene3D | 1 | 147 | 147 | 7.2E-38 | ||
| PANTHER | 5 | 186 | 182 | 3.5E-120 | – | |
| ProSiteProfiles | 9 | 43 | 35 | 9.449 | ||
| TIGRFAM | 11 | 45 | 35 | 4.9E-5 | ||
| ProSiteProfiles | 44 | 78 | 35 | 9.909 | ||
| SUPERFAMILY | 44 | 420 | 377 | 4.93E-8 | ||
| TIGRFAM | 47 | 77 | 31 | 9.5E-8 | ||
| Pfam | 78 | 127 | 50 | 3.4E-9 | ||
| ProSiteProfiles | 81 | 115 | 35 | 10.819 | ||
| TIGRFAM | 83 | 116 | 34 | 1.8E-5 | ||
| PANTHER | 112 | 288 | 177 | 3.5E-120 | – | |
| ProSiteProfiles | 116 | 150 | 35 | 11.772 | ||
| TIGRFAM | 118 | 152 | 35 | 2.3E-7 | ||
| Pfam | 139 | 200 | 62 | 1.8E-16 | ||
| ProSiteProfiles | 151 | 185 | 35 | 11.378 | ||
| TIGRFAM | 153 | 186 | 34 | 9.3E-7 | ||
| Gene3D | 158 | 273 | 116 | 5.8E-29 | ||
| ProSiteProfiles | 186 | 220 | 35 | 13.746 | ||
| TIGRFAM | 188 | 222 | 35 | 4.9E-10 | ||
| Pfam | 203 | 233 | 31 | 4.2E-4 | ||
| ProSiteProfiles | 221 | 255 | 35 | 6.018 | ||
| Pfam | 256 | 304 | 49 | 1.7E-14 | ||
| ProSiteProfiles | 256 | 290 | 35 | 10.654 | ||
| TIGRFAM | 258 | 291 | 34 | 7.1E-7 | ||
| PANTHER | 283 | 459 | 177 | 3.5E-120 | – | |
| ProSiteProfiles | 291 | 325 | 35 | 10.348 | ||
| TIGRFAM | 293 | 323 | 31 | 1.4E-5 | ||
| Gene3D | 310 | 459 | 150 | 6.2E-33 | ||
| ProSiteProfiles | 326 | 360 | 35 | 11.29 | ||
| TIGRFAM | 329 | 362 | 34 | 1.0E-9 | ||
| Pfam | 329 | 372 | 44 | 6.6E-12 | ||
| ProSiteProfiles | 361 | 395 | 35 | 11.608 | ||
| TIGRFAM | 363 | 397 | 35 | 1.6E-8 | ||
| Pfam | 384 | 428 | 45 | 6.5E-4 | ||
| ProSiteProfiles | 396 | 430 | 35 | 8.605 | ||
| ProSiteProfiles | 466 | 500 | 35 | 8.616 | ||
| Gene3D | 466 | 528 | 63 | 2.3E-5 | ||
| Pfam | 471 | 497 | 27 | 0.0068 | ||
| TIGRFAM | 471 | 497 | 27 | 3.2E-4 | ||
| ProSiteProfiles | 501 | 530 | 30 | 6.106 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0672300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…