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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0673600 |
| Transcript ID | LotjaGi1g1v0673600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat protein; TAIR: AT4G33270.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q54MZ3|CDC20_DICDI Anaphase-promoting complex subunit cdc20; TrEMBL-Plants: tr|K7LIT2|K7LIT2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0673600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:123943933..123948041) extracted from Lotus japonicus Gifu genome v1.2.
CTTTACCAATCTCATTCTCCCTAGCACAGACAACTGAAGCAATCGATGGAACCTCTCGACTGAAACCACCGTTCCTCACG CTCGCTAGCTCCACCGTTGTCGTTCCCTTTCACCATAACCACCGTTCCTCACGCTCGCTAGATCCTCCGCCGGAGTCAGT GGTCGAATCCACAGTATGCGGTGGTGAATGGGTTTCCCTTCGCGTGTCCGCCGCTCGTCGCTCGCAAACCGTCATCCTCC ATCGCCAGTTAACAAGCTTAAGGGAAAAGTCTGAACCGTCATCCTCCATCGCCAGAGCTTAAGGAGCAACAAAAGGTATG ATCAATTTTTTAGGGTTATGCATATTGAAGGTCATCCATACCAGTATCCAACAGCATATTGAAGCTCTTTTTGTTTTGGT CCAACAGCATCTCGATTTCTATCCTGTATTACCAGCTTCCAGCTTATTAAGCAGCTCACGCAAGGGATACATCTGAGGAT GAGATATTGGCTTTCGGTGGCTTGGATGCTGTGGTTTTTGTAAGGATACTTGTGTTTAGGTTGTTCAATCCTTCTACAAT TTGAACAATTTTGGCTGTGTGCATTATGTTTTCTTGTTGAATGTTTCACTGGAATGAATTTAAATTGCTTTCTTATTTGA TAATTTCTTAATCTGGAATCTGCCAAACCAACCGAATGTTGATTTTTGATGCCTAGATAAGTACAAGTGATGAGGCCATT AAACTTATTCTAAAGATTTGTTTATTTTAAGTCTACTCTCTAGATGCACTTGATGTCTGTCTCTAAGAATACATATGTTA GGGGTATATATTTGATAAAACATCTCTGATCAATATTAATTAACATTCTTACTATGTTGCACAACAATTTTATCATTTTT TTCAATGACAATTTCTCATGCAAGTCAATCATTTGAGTCTTTGGGCTAAAGGGAAGCCTAACACTGAAATTCGTTAGGAA ACGGAAGATTCATCTAAAAATCATGCTTGATTGCATATTTATGCCATTGGATGGTGTAAGTACTTGAAATCTAATATGAT TTATGCTTTGAATAAGAAATCTAATATGATTTATGCAGTAGACACTGATGCTCATACATTTGGTAAAAAGAAAATGGTTG ATTCACATGACCTTGAGCTTGTGAGAGGACAGCTTTTGTGAATTGCGTGCCATGTTTGCCTAAACATGTTGAATATAGCA GAAACAGAATGCTATTTATTGTCTAACGTTTAACCGTATATTGGCACCTTTTCAAGAATTAGGTTTTCACCATCCATTAG GTGCTTGTCTTCAATTTCAGAATATGAACTTGTTGGCATATTGTTAGGATATGTTGCATTGAGTAAAGAAAGTATAGAGC GCGTTTAGGATATGTAATTCTACTTCAATTCCCTCTGAATTCTTTCTTTCTTTCTTTTTTTCAAGAACTGAGGATTTATT ATCTCTTATAATAACTACTTAACAGGAATCCTACAGACAGAAACTGGATGAGACGCTGAATTTGGGTTCTGATGGGAAGC CATTTAGGATGTTAGTTTTCAGAGGAAGTTCTAAATCAACTACAAAATCTATTCGTCACATCGATCAGGTGCGACAAGCA GACGCAGCCGCACTTCAAAACAGTATCAATCAGCCCCGCCCTCGTACAATGCCTAAGGTTCTCTTCATATCACTGCTCTT TTAATAATAATTTGTTTTCTGATTCTGTTTTTCTTGTTTTCTTTTTGTTTGAGATAATGCGATGTTTATATAGATCATGC AATACAAGTATTATCATTGTGTTAGTAAGTCCTAAGTTTGCCTCCTGCAATTTGCTTCCTCTTGGAGGAATCAATGAACA AGCGTTGTAAAATTGTAATATTGGGTGATGAGAAGAATCATTTCTGATTTCTAACCATTTTTATTCTCCTGCTGTACACT GATTTGATAAACTGAATAACTATGCATGCAGAAAGAGGCCAAGGTCTTGGATGCACCAAATATTAGAAATGACTACTATT CAAACACTATGGATTGGGGGAAAAACAACATTCTTGCTGTTGCTTTGGGATCAGAAATGTACCTTTGGAACTCTGTGAAC AACAATGTACATAGGTTGTTTGAAGCCACTCACAATGATTGTCCCACAAGTGTTGCCTGGTCACGGGATGCCAAACTTTT CGCAGCAGGATTTATGCACTCTAAGCTTCAACTCTGGGATGCTGAGACTTCTAAGCCAGTATGTATCTCTCTATTTATCT GCTTCTCTAATTATACAACATGAACGTCTGGACTCAATTCCTAGTTTTTAACTTTCAGATAAGAGTCCTAGAAAGTCATG GTCAAAGGATTGGAACCATTGCATGGAGTGGCGATACTTTAACTTCTGGAAGCCATGACAAATCTATAATCAACCATGAT GGTACGTATAGTTCTTTTTAACCCTTTAGATATATTTTGAGTACAGAAAGCTATTGATGAAATGTGATGATATAACATCT TGCTTTATTATGTTACTGTGAGCAGTTAGAGCAAGAAGAAATGTTATTTCACGGGTAAAAGCACACGGAGCAGAAGTTTG TGGCTTAAAATGGTCCAAAGGGGGAAATATGCTGGCAAGTGGCGGCAATGACAATCATATCTACATATGGGAATCATCTA AAATGAATTCATCGAGTTTCTTGCATTGTTTTAAGGACCATTCTGCTGCAGTCAAAGCCCTTGCTTGGTGCCCTTATGAT TCAAATGTGCTTGCTTCTGGAGGTGGCACAAATGATAGGTGTATTAAGATATGGAATATTCAAAAAGAAACTTGCATTCG CAGCATAGATACTACAGCTCAGGTAAGATACTTATTGTTTGTTTTTGGAGAATTAATAATTTCCATTCACCACAAATAAT TAATCACCATTGTTTTAATTGATTACTATTTAGTCTTTTGGACAAATGCATCCATTGTTTACTCTTGCTGAATGATAGTT TGGCATTATGTGCAGGTTTGTGGATTAGAATGGAATAGGCATCACAAGGAGATATTAAGTGGCCATGGCTTTAGCACAAG TACATCCCACAACGAACTTTGCTTGTGGCGGTATCCATCCATGAATAAAATGGGAGGCTTGGACCCTCATGCTTCAAGAG TCCTCCATCTATCTCAGGTATATATGCTTCCTATAAGTAAAAACTTCAACAGTTTCTTTATTTCTCTCTTCTTTTCCTAT CACACCACTCATCATATATCTCACTTCTCTCTCTTTTATTCCAATGTGGTGTGGGGTGGAATTGGGGTGTCAAAGTATTA TTTTCCATAACTTAAACTCTAGAACCTGGTCCAATTATAAATATTTAAAGCATGTAATGTAAGGTATGCAATCAGGAAGA GCATCTTATGTAGTACCTGTATTTGTTTGAACACTAGTGCCATATTATGCTGATGACTCCAATGAATTAATCCATTTAAA CTCAATCCTGGCAATTATTTCTTTCAAGTTAACACTAGGTTCTTATCTCTTGCAGAGCCCAGATGGGTTAACAGTGGTGT CAGCTGGGGCAGATGAAACTCTTCGCTTTTGGGATATTTTTGGGCCACCTGCTACTGATACATCAAAGATCTCACATCTG GATAACCTTTTGTCCCTGAAGATATCCGCATTAAGATAACATTTTCTTTTACGAGCTTGTTTGGTTGCGGACCAAAGAGC ACTTGTTGGAGCTTATTTAACTCATTTTTTAGTAGCTCCAATAAGTTCTCTTTAGTCCGTATCTGAAATCAATCTAAACC TGAAAGTCTCATTATTGTTTCCCTACTGATTTTCCCTACTGATTTTTCCCTACTGATTTTTCTAATTGTCCCTACTGATT TTTCTACTGATTTTTATAATTGTCCTACTGCTGTAGTTTTCAGTTTTCATGATGTCTAATATCTAAATCTTATGTGAAGG TTGATTTTGAAACACAAATTGCTGCAAGAGACTCACAGCATCACATAGATGATGAAGAATTAGAGGATGATTTGGATGGC ATTTGATTTAGATGAATATATGTATTTGATACTATGTTTTTAATTATACTTGACATTTTACCATGACTATATATGGATTC ACTACTATGGTTATGTAGGTTGATGAACA
CDS sequence (LotjaGi1g1v0673600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAGTTTTCAGAGGAAGTTCTAAATCAACTACAAAATCTATTCGTCACATCGATCAGGTGCGACAAGCAGACGCAGC CGCACTTCAAAACAGTATCAATCAGCCCCGCCCTCGTACAATGCCTAAGAAAGAGGCCAAGGTCTTGGATGCACCAAATA TTAGAAATGACTACTATTCAAACACTATGGATTGGGGGAAAAACAACATTCTTGCTGTTGCTTTGGGATCAGAAATGTAC CTTTGGAACTCTGTGAACAACAATGTACATAGGTTGTTTGAAGCCACTCACAATGATTGTCCCACAAGTGTTGCCTGGTC ACGGGATGCCAAACTTTTCGCAGCAGGATTTATGCACTCTAAGCTTCAACTCTGGGATGCTGAGACTTCTAAGCCAATAA GAGTCCTAGAAAGTCATGGTCAAAGGATTGGAACCATTGCATGGAGTGGCGATACTTTAACTTCTGGAAGCCATGACAAA TCTATAATCAACCATGATGTTAGAGCAAGAAGAAATGTTATTTCACGGGTAAAAGCACACGGAGCAGAAGTTTGTGGCTT AAAATGGTCCAAAGGGGGAAATATGCTGGCAAGTGGCGGCAATGACAATCATATCTACATATGGGAATCATCTAAAATGA ATTCATCGAGTTTCTTGCATTGTTTTAAGGACCATTCTGCTGCAGTCAAAGCCCTTGCTTGGTGCCCTTATGATTCAAAT GTGCTTGCTTCTGGAGGTGGCACAAATGATAGGTGTATTAAGATATGGAATATTCAAAAAGAAACTTGCATTCGCAGCAT AGATACTACAGCTCAGGTTTGTGGATTAGAATGGAATAGGCATCACAAGGAGATATTAAGTGGCCATGGCTTTAGCACAA GTACATCCCACAACGAACTTTGCTTGTGGCGGTATCCATCCATGAATAAAATGGGAGGCTTGGACCCTCATGCTTCAAGA GTCCTCCATCTATCTCAGAGCCCAGATGGGTTAACAGTGGTGTCAGCTGGGGCAGATGAAACTCTTCGCTTTTGGGATAT TTTTGGGCCACCTGCTACTGATACATCAAAGATCTCACATCTGGATAACCTTTTGTCCCTGAAGATATCCGCATTAAGAT AA
Protein sequence (LotjaGi1g1v0673600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVFRGSSKSTTKSIRHIDQVRQADAAALQNSINQPRPRTMPKKEAKVLDAPNIRNDYYSNTMDWGKNNILAVALGSEMY LWNSVNNNVHRLFEATHNDCPTSVAWSRDAKLFAAGFMHSKLQLWDAETSKPIRVLESHGQRIGTIAWSGDTLTSGSHDK SIINHDVRARRNVISRVKAHGAEVCGLKWSKGGNMLASGGNDNHIYIWESSKMNSSSFLHCFKDHSAAVKALAWCPYDSN VLASGGGTNDRCIKIWNIQKETCIRSIDTTAQVCGLEWNRHHKEILSGHGFSTSTSHNELCLWRYPSMNKMGGLDPHASR VLHLSQSPDGLTVVSAGADETLRFWDIFGPPATDTSKISHLDNLLSLKISALR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 358 | 358 | 1.6E-190 | – | |
| PANTHER | 1 | 358 | 358 | 1.6E-190 | ||
| Gene3D | 2 | 349 | 348 | 2.6E-103 | ||
| SUPERFAMILY | 61 | 347 | 287 | 8.24E-56 | ||
| SMART | 86 | 126 | 41 | 0.16 | ||
| Pfam | 87 | 149 | 63 | 1.8E-4 | ||
| ProSiteProfiles | 94 | 135 | 42 | 9.874 | ||
| ProSiteProfiles | 94 | 355 | 262 | 32.746 | ||
| SMART | 129 | 166 | 38 | 0.039 | ||
| SMART | 170 | 209 | 40 | 4.1E-7 | ||
| Pfam | 176 | 208 | 33 | 4.3E-6 | ||
| ProSiteProfiles | 177 | 209 | 33 | 12.781 | ||
| ProSitePatterns | 196 | 210 | 15 | - | ||
| SMART | 215 | 257 | 43 | 1.1E-5 | ||
| Pfam | 218 | 257 | 40 | 3.2E-4 | ||
| ProSitePatterns | 244 | 258 | 15 | - | ||
| SMART | 260 | 304 | 45 | 78.0 | ||
| SMART | 307 | 346 | 40 | 0.0016 | ||
| Pfam | 314 | 346 | 33 | 0.0029 | ||
| ProSiteProfiles | 314 | 347 | 34 | 12.881 | ||
| ProSitePatterns | 333 | 347 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Anaphase-promoting complex binding | Interacting selectively and non-covalently with an anaphase-promoting complex. A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis. | ||
| Molecular function | Ubiquitin-protein transferase activator activity | Increases the activity of a ubiquitin-protein transferase, an enzyme that catalyzes the covalent attachment of ubiquitin to lysine in a substrate protein. | ||
| Biological process | Positive regulation of ubiquitin protein ligase activity | Any process that activates or increases the frequency, rate or extent of ubiquitin protein ligase activity. |
Expression pattern of LotjaGi1g1v0673600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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