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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0673600 |
| Transcript ID | LotjaGi1g1v0673600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat protein; TAIR: AT4G33270.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q54MZ3|CDC20_DICDI Anaphase-promoting complex subunit cdc20; TrEMBL-Plants: tr|A0A1J7HIB5|A0A1J7HIB5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0673600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:123943933..123948041) extracted from Lotus japonicus Gifu genome v1.2.
CTTTACCAATCTCATTCTCCCTAGCACAGACAACTGAAGCAATCGATGGAACCTCTCGACTGAAACCACCGTTCCTCACG CTCGCTAGCTCCACCGTTGTCGTTCCCTTTCACCATAACCACCGTTCCTCACGCTCGCTAGATCCTCCGCCGGAGTCAGT GGTCGAATCCACAGTATGCGGTGGTGAATGGGTTTCCCTTCGCGTGTCCGCCGCTCGTCGCTCGCAAACCGTCATCCTCC ATCGCCAGTTAACAAGCTTAAGGGAAAAGTCTGAACCGTCATCCTCCATCGCCAGAGCTTAAGGAGCAACAAAAGGTATG ATCAATTTTTTAGGGTTATGCATATTGAAGGTCATCCATACCAGTATCCAACAGCATATTGAAGCTCTTTTTGTTTTGGT CCAACAGCATCTCGATTTCTATCCTGTATTACCAGCTTCCAGCTTATTAAGCAGCTCACGCAAGGGATACATCTGAGGAT GAGATATTGGCTTTCGGTGGCTTGGATGCTGTGGTTTTTGTAAGGATACTTGTGTTTAGGTTGTTCAATCCTTCTACAAT TTGAACAATTTTGGCTGTGTGCATTATGTTTTCTTGTTGAATGTTTCACTGGAATGAATTTAAATTGCTTTCTTATTTGA TAATTTCTTAATCTGGAATCTGCCAAACCAACCGAATGTTGATTTTTGATGCCTAGATAAGTACAAGTGATGAGGCCATT AAACTTATTCTAAAGATTTGTTTATTTTAAGTCTACTCTCTAGATGCACTTGATGTCTGTCTCTAAGAATACATATGTTA GGGGTATATATTTGATAAAACATCTCTGATCAATATTAATTAACATTCTTACTATGTTGCACAACAATTTTATCATTTTT TTCAATGACAATTTCTCATGCAAGTCAATCATTTGAGTCTTTGGGCTAAAGGGAAGCCTAACACTGAAATTCGTTAGGAA ACGGAAGATTCATCTAAAAATCATGCTTGATTGCATATTTATGCCATTGGATGGTGTAAGTACTTGAAATCTAATATGAT TTATGCTTTGAATAAGAAATCTAATATGATTTATGCAGTAGACACTGATGCTCATACATTTGGTAAAAAGAAAATGGTTG ATTCACATGACCTTGAGCTTGTGAGAGGACAGCTTTTGTGAATTGCGTGCCATGTTTGCCTAAACATGTTGAATATAGCA GAAACAGAATGCTATTTATTGTCTAACGTTTAACCGTATATTGGCACCTTTTCAAGAATTAGGTTTTCACCATCCATTAG GTGCTTGTCTTCAATTTCAGAATATGAACTTGTTGGCATATTGTTAGGATATGTTGCATTGAGTAAAGAAAGTATAGAGC GCGTTTAGGATATGTAATTCTACTTCAATTCCCTCTGAATTCTTTCTTTCTTTCTTTTTTTCAAGAACTGAGGATTTATT ATCTCTTATAATAACTACTTAACAGGAATCCTACAGACAGAAACTGGATGAGACGCTGAATTTGGGTTCTGATGGGAAGC CATTTAGGATGTTAGTTTTCAGAGGAAGTTCTAAATCAACTACAAAATCTATTCGTCACATCGATCAGGTGCGACAAGCA GACGCAGCCGCACTTCAAAACAGTATCAATCAGCCCCGCCCTCGTACAATGCCTAAGGTTCTCTTCATATCACTGCTCTT TTAATAATAATTTGTTTTCTGATTCTGTTTTTCTTGTTTTCTTTTTGTTTGAGATAATGCGATGTTTATATAGATCATGC AATACAAGTATTATCATTGTGTTAGTAAGTCCTAAGTTTGCCTCCTGCAATTTGCTTCCTCTTGGAGGAATCAATGAACA AGCGTTGTAAAATTGTAATATTGGGTGATGAGAAGAATCATTTCTGATTTCTAACCATTTTTATTCTCCTGCTGTACACT GATTTGATAAACTGAATAACTATGCATGCAGAAAGAGGCCAAGGTCTTGGATGCACCAAATATTAGAAATGACTACTATT CAAACACTATGGATTGGGGGAAAAACAACATTCTTGCTGTTGCTTTGGGATCAGAAATGTACCTTTGGAACTCTGTGAAC AACAATGTACATAGGTTGTTTGAAGCCACTCACAATGATTGTCCCACAAGTGTTGCCTGGTCACGGGATGCCAAACTTTT CGCAGCAGGATTTATGCACTCTAAGCTTCAACTCTGGGATGCTGAGACTTCTAAGCCAGTATGTATCTCTCTATTTATCT GCTTCTCTAATTATACAACATGAACGTCTGGACTCAATTCCTAGTTTTTAACTTTCAGATAAGAGTCCTAGAAAGTCATG GTCAAAGGATTGGAACCATTGCATGGAGTGGCGATACTTTAACTTCTGGAAGCCATGACAAATCTATAATCAACCATGAT GGTACGTATAGTTCTTTTTAACCCTTTAGATATATTTTGAGTACAGAAAGCTATTGATGAAATGTGATGATATAACATCT TGCTTTATTATGTTACTGTGAGCAGTTAGAGCAAGAAGAAATGTTATTTCACGGGTAAAAGCACACGGAGCAGAAGTTTG TGGCTTAAAATGGTCCAAAGGGGGAAATATGCTGGCAAGTGGCGGCAATGACAATCATATCTACATATGGGAATCATCTA AAATGAATTCATCGAGTTTCTTGCATTGTTTTAAGGACCATTCTGCTGCAGTCAAAGCCCTTGCTTGGTGCCCTTATGAT TCAAATGTGCTTGCTTCTGGAGGTGGCACAAATGATAGGTGTATTAAGATATGGAATATTCAAAAAGAAACTTGCATTCG CAGCATAGATACTACAGCTCAGGTAAGATACTTATTGTTTGTTTTTGGAGAATTAATAATTTCCATTCACCACAAATAAT TAATCACCATTGTTTTAATTGATTACTATTTAGTCTTTTGGACAAATGCATCCATTGTTTACTCTTGCTGAATGATAGTT TGGCATTATGTGCAGGTTTGTGGATTAGAATGGAATAGGCATCACAAGGAGATATTAAGTGGCCATGGCTTTAGCACAAG TACATCCCACAACGAACTTTGCTTGTGGCGGTATCCATCCATGAATAAAATGGGAGGCTTGGACCCTCATGCTTCAAGAG TCCTCCATCTATCTCAGGTATATATGCTTCCTATAAGTAAAAACTTCAACAGTTTCTTTATTTCTCTCTTCTTTTCCTAT CACACCACTCATCATATATCTCACTTCTCTCTCTTTTATTCCAATGTGGTGTGGGGTGGAATTGGGGTGTCAAAGTATTA TTTTCCATAACTTAAACTCTAGAACCTGGTCCAATTATAAATATTTAAAGCATGTAATGTAAGGTATGCAATCAGGAAGA GCATCTTATGTAGTACCTGTATTTGTTTGAACACTAGTGCCATATTATGCTGATGACTCCAATGAATTAATCCATTTAAA CTCAATCCTGGCAATTATTTCTTTCAAGTTAACACTAGGTTCTTATCTCTTGCAGAGCCCAGATGGGTTAACAGTGGTGT CAGCTGGGGCAGATGAAACTCTTCGCTTTTGGGATATTTTTGGGCCACCTGCTACTGATACATCAAAGATCTCACATCTG GATAACCTTTTGTCCCTGAAGATATCCGCATTAAGATAACATTTTCTTTTACGAGCTTGTTTGGTTGCGGACCAAAGAGC ACTTGTTGGAGCTTATTTAACTCATTTTTTAGTAGCTCCAATAAGTTCTCTTTAGTCCGTATCTGAAATCAATCTAAACC TGAAAGTCTCATTATTGTTTCCCTACTGATTTTCCCTACTGATTTTTCCCTACTGATTTTTCTAATTGTCCCTACTGATT TTTCTACTGATTTTTATAATTGTCCTACTGCTGTAGTTTTCAGTTTTCATGATGTCTAATATCTAAATCTTATGTGAAGG TTGATTTTGAAACACAAATTGCTGCAAGAGACTCACAGCATCACATAGATGATGAAGAATTAGAGGATGATTTGGATGGC ATTTGATTTAGATGAATATATGTATTTGATACTATGTTTTTAATTATACTTGACATTTTACCATGACTATATATGGATTC ACTACTATGGTTATGTAGGTTGATGAACA
CDS sequence (LotjaGi1g1v0673600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTGGGGGAAAAACAACATTCTTGCTGTTGCTTTGGGATCAGAAATGTACCTTTGGAACTCTGTGAACAACAATGT ACATAGGTTGTTTGAAGCCACTCACAATGATTGTCCCACAAGTGTTGCCTGGTCACGGGATGCCAAACTTTTCGCAGCAG GATTTATGCACTCTAAGCTTCAACTCTGGGATGCTGAGACTTCTAAGCCAATAAGAGTCCTAGAAAGTCATGGTCAAAGG ATTGGAACCATTGCATGGAGTGGCGATACTTTAACTTCTGGAAGCCATGACAAATCTATAATCAACCATGATGTTAGAGC AAGAAGAAATGTTATTTCACGGGTAAAAGCACACGGAGCAGAAGTTTGTGGCTTAAAATGGTCCAAAGGGGGAAATATGC TGGCAAGTGGCGGCAATGACAATCATATCTACATATGGGAATCATCTAAAATGAATTCATCGAGTTTCTTGCATTGTTTT AAGGACCATTCTGCTGCAGTCAAAGCCCTTGCTTGGTGCCCTTATGATTCAAATGTGCTTGCTTCTGGAGGTGGCACAAA TGATAGGTGTATTAAGATATGGAATATTCAAAAAGAAACTTGCATTCGCAGCATAGATACTACAGCTCAGGTTTGTGGAT TAGAATGGAATAGGCATCACAAGGAGATATTAAGTGGCCATGGCTTTAGCACAAGTACATCCCACAACGAACTTTGCTTG TGGCGGTATCCATCCATGAATAAAATGGGAGGCTTGGACCCTCATGCTTCAAGAGTCCTCCATCTATCTCAGAGCCCAGA TGGGTTAACAGTGGTGTCAGCTGGGGCAGATGAAACTCTTCGCTTTTGGGATATTTTTGGGCCACCTGCTACTGATACAT CAAAGATCTCACATCTGGATAACCTTTTGTCCCTGAAGATATCCGCATTAAGATAA
Protein sequence (LotjaGi1g1v0673600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDWGKNNILAVALGSEMYLWNSVNNNVHRLFEATHNDCPTSVAWSRDAKLFAAGFMHSKLQLWDAETSKPIRVLESHGQR IGTIAWSGDTLTSGSHDKSIINHDVRARRNVISRVKAHGAEVCGLKWSKGGNMLASGGNDNHIYIWESSKMNSSSFLHCF KDHSAAVKALAWCPYDSNVLASGGGTNDRCIKIWNIQKETCIRSIDTTAQVCGLEWNRHHKEILSGHGFSTSTSHNELCL WRYPSMNKMGGLDPHASRVLHLSQSPDGLTVVSAGADETLRFWDIFGPPATDTSKISHLDNLLSLKISALR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 296 | 296 | 9.2E-165 | – | |
| PANTHER | 1 | 296 | 296 | 9.2E-165 | ||
| ProSiteProfiles | 1 | 293 | 293 | 33.485 | ||
| Gene3D | 1 | 289 | 289 | 4.9E-91 | ||
| SUPERFAMILY | 6 | 285 | 280 | 1.69E-55 | ||
| SMART | 24 | 64 | 41 | 0.16 | ||
| Pfam | 26 | 87 | 62 | 1.8E-4 | ||
| ProSiteProfiles | 32 | 73 | 42 | 9.874 | ||
| SMART | 67 | 104 | 38 | 0.039 | ||
| SMART | 108 | 147 | 40 | 4.1E-7 | ||
| Pfam | 114 | 146 | 33 | 3.4E-6 | ||
| ProSiteProfiles | 115 | 147 | 33 | 12.781 | ||
| ProSitePatterns | 134 | 148 | 15 | - | ||
| SMART | 153 | 195 | 43 | 1.1E-5 | ||
| Pfam | 156 | 195 | 40 | 2.5E-4 | ||
| ProSitePatterns | 182 | 196 | 15 | - | ||
| SMART | 198 | 242 | 45 | 78.0 | ||
| SMART | 245 | 284 | 40 | 0.0016 | ||
| Pfam | 252 | 284 | 33 | 0.0023 | ||
| ProSiteProfiles | 252 | 285 | 34 | 12.881 | ||
| ProSitePatterns | 271 | 285 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Anaphase-promoting complex binding | Interacting selectively and non-covalently with an anaphase-promoting complex. A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis. | ||
| Molecular function | Ubiquitin-protein transferase activator activity | Increases the activity of a ubiquitin-protein transferase, an enzyme that catalyzes the covalent attachment of ubiquitin to lysine in a substrate protein. | ||
| Biological process | Positive regulation of ubiquitin protein ligase activity | Any process that activates or increases the frequency, rate or extent of ubiquitin protein ligase activity. |
Expression pattern of LotjaGi1g1v0673600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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