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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0686400 |
| Transcript ID | LotjaGi1g1v0686400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT3G53190.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9SCP2|PLY12_ARATH Probable pectate lyase 12; TrEMBL-Plants: tr|A0A072U2V5|A0A072U2V5_MEDTR Pectate lyase; Found in the gene: LotjaGi1g1v0686400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125356951..125363072) extracted from Lotus japonicus Gifu genome v1.2.
TTGAAACCTTAATTAGTAGTAGTATAATACTACTACAATACAAAAACATTATCCTGTGCTTCTGTTCACACTCATGCTCA ACCACGTTCCTTAATTATTGTAAAGAAAAAAGCTGATTTCCCCTGCTTATTAATTCACCTCACTCAACACTATCTAACAC TTTTACAGAATCAACTAGCCATGACATGACACAGTAGTACTAAGGACACTGAGAGAGTGTGTGAAAATTGTGAGGACTGA GCATTGACCAACAACAATGCTGCTCCTCCAAACAACTTGCATTGTGCTCATCTCTGTTCTGGGCTTGTTTTCACAGCTTG GAACAGCAATGCTGAACCTAACTCTCCCCGGAGCACACCCTGACCCTGAAGCTGTTGCTCACGAAGTTCACAGGTACTAC TCTCTTCTCTGTTTTGAGTTGACCCCACAATGTAGTTCCTACATTGCAGGAATTTAGAGGGAAAAGAACAGATCTTTGCA TCAGGGTCATGTTTTTTCACTTTCCAGTTGCATTATGGCTTAGATCAGGATTTTAAGTTATGGTTGGGGCTATGTTACAA CTGTGGACAAATGCAAGTTCATATGGCTGCAGTGTAAAGAACTTTAGCCTTTAGACTGTCAACATTGACATCACAACAAC AATCGCAGCCGCATAAACGGGCATTTGTCCGCTCAACCCCGCAACACAGCCGCAACCACAATTTAAAACTAGTTAGGTGC ACTAACCAATTTTTGTTGTGTAAGAAGGTCAATGTTCTTTCACTTTCCTTTTGTGTTATGAGTTAGATTTGGGTTTTAAA TTGTGGTTCCGGCTATGTTGTGGAATCCTGAACAAACGCAAGTTGATGTGGCTGCAATTGCTGTCACGATGCTGAATGTG GCTTTAGACTCATAGCATACGAATTGTGACAATAATTGCAGCCACATTAATTGCATTTGTCCCGTCATTCCGAACAAAGT TACAATTGCAACCGCAATGTAAAACTCTGAAAGTGAGGTGCATTGACCAATTTTTTGTTGTGTAGGAAGGTGAATGCTTC AATTGCAAGAAGGGAAATGCTGGCGGTTTCATGGGAGAAAGATGAGTCCGCGTGTGCAACAGGGAACCCCATTGATGATT GCTGGAAATGCGACCCCGACTGGCCGAACAATCGACAGAGGCTAGCGGACTGCGTGATCGGGTTCGGGCAGTACGCGAAG GGAGGAAAAGGTGGGGAGTTTTATCTGGTGACGGATTCCTCCGACAACGATGTGGTTAACCCGAAACCGGGGACGCTGAG GTATGGGGTGATACAGAATGAGCCTTTGTGGATAGTGTTTCCTAGTAATATGATGATAAAGCTGTCTCAGGAGCTGATCT TCAACAGCTACAAGACAATTGATGGTCGCGGTGCTGATGTGCACATTGTGGGAGGAGGGTGCATCACTTTGCAGTATATA AGCAATGTCATCATACATAACATTCACATTCATCATTGTCATCCCTCGGGTAACACCCTCTTATTCTAAAATGCATATTT GAAAACTTGTAAGCTAAAATGAATGATGGTGGACAGAACACTGAAGCTAAAAGCTAAAGTCACAGTGGAGAAAAGCAAAT GTTCAAGACTTTTACTTCTATCCCCCATAATTTTGATTTCATAGTGATTTTCAAACAAATTTTCAAACATGCTATTAGGA ACCTGCAAAAATCAATCATGGAAAGCAGTTTTTGTGAGTAGTCTATGTGTTAGAATTGATTCTGGGAAAAAGAAACTTAA TATAAACATGTTATTAATTGATTAGCAACAATGCAGGTAACACGAACGTGCGGTCAAGCCCAGAGCACTACGGTTACAGA ACAGAATCGGATGGTGATGGAATATCCATATTTGGAGCAAAGGATATATGGATCGACCATTGCACCCTCTCACGGTGCAA GGACGGGCTCATCGACGCGGTGATGGGTTCCACAGGGATAACCATCTCCAACAACTACATGTCCCACCACAACGAGGTCA TGCTCCTCGGACACAGCGATGACTACCTCCCTGACTCTGGCATGCAGGTCACCATCGCCTTCAACCACTTCGGCCAAAAC CTCGTCCAGAGAATGCCCCGGTGCCGGAGGGGCTACATCCACGTCGTTAACAATGAGTTCACCCAGTGGGAGATGTACGC CATCGGCGGCAGCGGGAACCCCACCATAAATAGCCAGGGGAACCGATATAGTGCGCCTTCGAACCCTTTTGCTAAGGAGG TTACAAAGAGGGTAGAGACCGAGAAGGATAAGTGGAAAGGGTGGAATTGGAGGTCAGAAGGTGATGTTTTGGTGAATGGA GCATTTTTTGTGACATCAGGGGAAGTTCTTGAGGTTAAGTACGAGAAGGCTTACAGTGTTGAACCGAAGTCCGCTGATCG GATTGCTCTGCTTACCATGTATTCAGGTGTTCTCGGTGTTGCCAGGTACCAAACAAAAACAATAAAAATACAATCTTTTT AGTTTTTAAGATGTGGGTTTTTTTTTCGGTTGAAATTTTAAGTGAGGTGATGAACAGGGACAATAATCTGGGAATGTGGA GCAGAGGACCCGAAAGTGAGGGTGATGGCGGTTCAGAGTTTGGCCTGATGTACTCCGACGATATGTCGGGGGGTGGAGGA GCAGTGCTACCACTACGTTCATTTCCTTTTACTCTTGGAATGTGCTTCTTGTCCTGGAAAATAATAATACCGTTAACATT TATTCTATGACAATTCATGGAATGGATCATCTTCTTCAGTGTAATGTAATGTGACAGCATGCTGTTTCTGTATTCCCTCA TTATTGAATGAAATGGGCTTGGTGCTGCTCAATTCTAAAAGACCAAGCACCATTAAGACTGTACATATTCTCCTTCATCC CATTCTCATTTGAGCTCTGTTTGATTTGATCGGGTACCATTAAGACTGGCAAAAGTTGCATTAACATGCCACGAATAGGA ATAGAATAGGAGGGGAATGAGTTGATGTTTTAGGAAATAAAGGAAAAATAGAAAGAAAAAGTAAGTGATAATAAGATTAA AAATAATAATATTGGGTAAAAATGAAATAGAAAAAATGAATCAAAACTCTTACACTATCCATGGTGCTTGGATTTAGGAA AGGGATTTTTTTGCCACACTTGCATTTAAGTGGAAAAGAGGTAGATGGTGGGGGAAAATAGAAAGAAAAGATAAAAGAAA AGGAGAAAGTAAGAGATGTGATGATGATGTTATTGGAAAAGAAGATAGATGGAAAGAAAGTGGAGGTAGAAATAGGTAAA AAAGAAAGTGAGTGAATAAATCATAATTGTTTTGAAAATTCTACCAACAACCAAGGTTTATATCAAAGTAGTGACAGTTT GGTGTTATAAGCATACTCCATTATAAACAATTTTTTAAGGATCAAAATATCCTTAAATGATATAAGTTCAATCATTTTAA CCTCAAAAAGATGGGAAACAAGAATTTCAGCCTCTCCAAGAACGATTATCTTTCTTCAGGAACTAAAGTCTAAAGTGGCC GATCCCATATTTTTTAAGGGATCACAGTAAGTGAAGCCAAGAACCAAATCCTTATTTGGAATTGGAAGCAAATATCTCAA TTTTGAACTGCTTTAAACAGGAAAGGCAGCATACTAGCATAAGGTAGATGTGCACACCACTAGCCACTTGCAGTTTAAGC TATATTTTTAAAGTTTTTCTTTTATTAATTCAATCTATTGCATTACATGGGACGAAGAAGCTAAACATTGGATTTTCAAA AATAGATATTATTCGTTTTGGTGGGGAACGGGGGGATGAGTACGCAACAAAACTACCTCAGCTTGCACTCGACTATTGGG AAAATGAAAGCAAGACTAAATACAAAATGAGCCTCGGCTTCACCTTTCAAGAAATGCCATACCATCAGCGCTCTATGAAT GATTTGTTCATAAGCTCAACTGCATCGTCCATGAACTGCATGCATAAAAACAACTACATTAATCATGAAAGTTCATTGAA TATTTAGAATTGCATGTCTCATGTGAATGTAATATTCAATCATGAGCAGAGCAAATTATAAGGCCAGGCAAGATAAATAA ACACAAAAGTTTAAGCAGCTGTGATACTTTAAGATTAGAAATGAATTGACTGTTCAACTAGTTCACAAAAAGCATTGAGA ATATGCTTGAACCAATTCTAGTATTTCCAGGAAAAAGACATTGTACACAATTTGTAATATACTCCTAAAAGTATGGGTTT ATGAGCAGAGCATCTGGCAAGGTCTGCAAAATACTAGAGGTCCTTTAAAAACATCATGCTTTATAGCTACATTGAACTTC ATAGCCGAACTCCCTACACTATTGGCCTTTCTGAAAAGAAGAAGTATTCTTATAATACACAGCACACAGACACTGCAGTT ACTTGATAGTGATAGGCAAAGTTGTTATCACATGGGGCAATGCAAATCATTTTTTTCACAATATCAGGAAGTATAAGGGC GCATATATGGCTAGTAGCAACGTTGCTTTGTTCCTGATTCTGAGCAAGTTAATGTGCACATATGTTCAATCTGAATTCAA GGGTTGAATGCAACATATTGGTTGAAAAATACATAAAAGAAACTACGTATTCTATTCCACAATTCATCAATATTAGATGC AAAGAAGTCGTTAAGTTCAAGAGGAATGTATGCATGAAAAATATAAAAAAAGCCCTTCACCTTCCCAAGCTGCTTAAGTT CTCGCCCAACTGGTTCCAAAAATTTCAGGTCAACGTTTATCGGCCATACCTACAACATGAAAACATATAATAAGTGAAGA AGGAAAGATCAGCATTACTTAACATAGCACACCTCTAAATTACAAAACAAGACAAGGATCCCTTGACTCTTGGCCATTTG GTATTTATGTAGAAATTATGTTTTCATCACCTCTCCACCTTACACTTTTAGAGAGATATAGGAACAGAAGAGAGAGAAAT GAGTGATATGATATGTGATGTGATGAAAACAAAAGAGAGAGACAGAAAGAAAACGAGGTAGAAAAAATGTTATATGTACT GTTTTCTGTCCAAATATTTGAAAACAGCAAATAAAGTAAAAACAATATGACATTTTTGTAATTACTAATGAAAATAGGAA ATAAAAACAGAAACGCTTTTTTAGACTACACAAGCACTTAAGATGGATAGAAGCAGATGTGTGAAGTAACATTCCATACT AAAGGAGCTGGCTATCAGTGTATCTATCCGCTTGGATGCAAACCAAAGAGCACTTATTGAAGCTTATTTAGTGCACTTTC TAGTAGATAAGCTCCAATAAACTCCAATAAGCCCATATCCAGACGGGCTCTATATCATATAAAATTCAATTATATAGAGG AGAAGACCCAAGCTTTCAGCTTCATGGAAACATAGTTTATTGCATTTTTCTGAAGTTCTTTATAAAAGGAGTACTGCTAA GTACTAAATCCTCTTGGGGAAAAAACAATTAAAAACCTTGTTCCTAATTACTCAAACAGAACATAATCAAATGTAACCCA AAATTCATTCCACTTGAAAGATTACATACAAAATTGATTCCTAATACAATAGTTTACCGGCCATAACAAGAAGAAAATAG TTACCTTGAGGCCAAGCAGTTTGATGGGCATAGCCTGACCAGGTACTATGCAATCAGGACCAGCTGCTTCAACTATAGCA CCCTCACCAAACCCACCTCCAATAGGGTCTGGATGCTGAAAAACCCCAAAACATTCAAATTCAAATAAAAATTGAAACTT TGCAACTAAAAGCGATTAACGAGTAGCAAAAAAAGAGACCCTCATGACGGAGATGGCATAATCGGAAAAGGGGTTCTGGG AAATGCGAAGAACAGGAGATTGGTGAATTTTGGGCACTGGTTTCATAGAAGAAGATAAAGCTCTCCATGGAACATCGTTT TGCAACGAAGGTGAACCTCCTCCTGCTCCTTTTTTCGACATTTTCAATGTTTTGTTATCAGAATCACTTCAAAGTTTCAA TCTTTTGTTATCAGAATCACTTCAGAAACATGGATGGATGAAGTGAATGAAGCTGTATTGGACACAAATGTTGGATATTC TCTAATCTATTTCCTTGACCCAACTTAATAGATGGCTTGTCG
CDS sequence (LotjaGi1g1v0686400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGCTCCTCCAAACAACTTGCATTGTGCTCATCTCTGTTCTGGGCTTGTTTTCACAGCTTGGAACAGCAATGCTGAA CCTAACTCTCCCCGGAGCACACCCTGACCCTGAAGCTGTTGCTCACGAAGTTCACAGGAAGGTGAATGCTTCAATTGCAA GAAGGGAAATGCTGGCGGTTTCATGGGAGAAAGATGAGTCCGCGTGTGCAACAGGGAACCCCATTGATGATTGCTGGAAA TGCGACCCCGACTGGCCGAACAATCGACAGAGGCTAGCGGACTGCGTGATCGGGTTCGGGCAGTACGCGAAGGGAGGAAA AGGTGGGGAGTTTTATCTGGTGACGGATTCCTCCGACAACGATGTGGTTAACCCGAAACCGGGGACGCTGAGGTATGGGG TGATACAGAATGAGCCTTTGTGGATAGTGTTTCCTAGTAATATGATGATAAAGCTGTCTCAGGAGCTGATCTTCAACAGC TACAAGACAATTGATGGTCGCGGTGCTGATGTGCACATTGTGGGAGGAGGGTGCATCACTTTGCAGTATATAAGCAATGT CATCATACATAACATTCACATTCATCATTGTCATCCCTCGGGTAACACGAACGTGCGGTCAAGCCCAGAGCACTACGGTT ACAGAACAGAATCGGATGGTGATGGAATATCCATATTTGGAGCAAAGGATATATGGATCGACCATTGCACCCTCTCACGG TGCAAGGACGGGCTCATCGACGCGGTGATGGGTTCCACAGGGATAACCATCTCCAACAACTACATGTCCCACCACAACGA GGTCATGCTCCTCGGACACAGCGATGACTACCTCCCTGACTCTGGCATGCAGGTCACCATCGCCTTCAACCACTTCGGCC AAAACCTCGTCCAGAGAATGCCCCGGTGCCGGAGGGGCTACATCCACGTCGTTAACAATGAGTTCACCCAGTGGGAGATG TACGCCATCGGCGGCAGCGGGAACCCCACCATAAATAGCCAGGGGAACCGATATAGTGCGCCTTCGAACCCTTTTGCTAA GGAGGTTACAAAGAGGGTAGAGACCGAGAAGGATAAGTGGAAAGGGTGGAATTGGAGGTCAGAAGGTGATGTTTTGGTGA ATGGAGCATTTTTTGTGACATCAGGGGAAGTTCTTGAGGTTAAGTACGAGAAGGCTTACAGTGTTGAACCGAAGTCCGCT GATCGGATTGCTCTGCTTACCATGTATTCAGGTGTTCTCGGTGTTGCCAGGGACAATAATCTGGGAATGTGGAGCAGAGG ACCCGAAAGTGAGGGTGATGGCGGTTCAGAGTTTGGCCTGATGTACTCCGACGATATGTCGGGGGGTGGAGGAGCAGTGC TACCACTACGTTCATTTCCTTTTACTCTTGGAATGTGCTTCTTGTCCTGGAAAATAATAATACCGTTAACATTTATTCTA TGA
Protein sequence (LotjaGi1g1v0686400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLLQTTCIVLISVLGLFSQLGTAMLNLTLPGAHPDPEAVAHEVHRKVNASIARREMLAVSWEKDESACATGNPIDDCWK CDPDWPNNRQRLADCVIGFGQYAKGGKGGEFYLVTDSSDNDVVNPKPGTLRYGVIQNEPLWIVFPSNMMIKLSQELIFNS YKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPEHYGYRTESDGDGISIFGAKDIWIDHCTLSR CKDGLIDAVMGSTGITISNNYMSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGQNLVQRMPRCRRGYIHVVNNEFTQWEM YAIGGSGNPTINSQGNRYSAPSNPFAKEVTKRVETEKDKWKGWNWRSEGDVLVNGAFFVTSGEVLEVKYEKAYSVEPKSA DRIALLTMYSGVLGVARDNNLGMWSRGPESEGDGGSEFGLMYSDDMSGGGGAVLPLRSFPFTLGMCFLSWKIIIPLTFIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 35 | 35 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 17 | 16 | - | – | |
| PANTHER | 5 | 435 | 431 | 4.6E-272 | – | |
| PANTHER | 5 | 435 | 431 | 4.6E-272 | – | |
| Phobius | 18 | 35 | 18 | - | – | |
| Phobius | 36 | 480 | 445 | - | – | |
| SUPERFAMILY | 68 | 384 | 317 | 2.67E-98 | ||
| Gene3D | 72 | 414 | 343 | 4.0E-121 | ||
| PRINTS | 95 | 112 | 18 | 1.2E-73 | ||
| PRINTS | 119 | 144 | 26 | 1.2E-73 | ||
| SMART | 147 | 344 | 198 | 1.4E-92 | ||
| PRINTS | 155 | 171 | 17 | 1.2E-73 | ||
| Pfam | 156 | 336 | 181 | 6.6E-21 | ||
| PRINTS | 219 | 240 | 22 | 1.2E-73 | ||
| PRINTS | 299 | 318 | 20 | 1.2E-73 | ||
| PRINTS | 321 | 340 | 20 | 1.2E-73 | ||
| PRINTS | 363 | 387 | 25 | 1.2E-73 | ||
| PRINTS | 392 | 415 | 24 | 1.2E-73 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0686400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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