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LotjaGi1g1v0693200.2

Overview

Field Value
Gene ID LotjaGi1g1v0693200
Transcript ID LotjaGi1g1v0693200.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent RNA helicase; TAIR: AT3G09720.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q84TG1|RH57_ARATH DEAD-box ATP-dependent RNA helicase 57; TrEMBL-Plants: tr|V7CHF2|V7CHF2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0693200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:126100146..126104114) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCCAACGACTCGTTGTTTGCCGGCATTCATTTCGATAGAAAGAAGTTCGGCGCTGATATTGCCAGGTTCCAGGTAAC AATATCTCGTTCGTTTCTTCCCATATGCCTTCATTTCATTTCAAAGTGAATGTCGCGTGCTAACAGTTATTCATTGCTTG AAAAGAAAAAAGAGAACGCTAACGATTCAGTGAAGATTTGGAGCGTGACTGAAGATGAAAGTGAGAAAACAGAAGATACA GTCAAGGAGAGAGCACCGTCTGTGAAGAAGAGGAAGCGCAAGAGAAACTCTCGCGGTATTCTCATTCTCATGCTTTATAT CATGCCATGGCATCCCTTGTATTAATATTCTTTATCTCACTTTTACTTTGTTTCTGTAAATGAATAGAAGAAACGGTTGA AGGGTTTAGTGTGTTTAGAAGTTCAGCACACGAGCCACAGTTGGAATTGAATGATGAAGTCCAACCTGACGATGATGAGT CCATTCGACTGAAGAAAGAAAAAAATAGACAACTTGAGGTTGAGTTCCTTTCTGTTTTGTGCAGTATACAACATAATTCT CCGCGCTATTAAGTTTGTGCAATGATTTCTCATCACTCACTTCCATTTTGGTCTGTTTTCAGCGGGATGCTCTCTTCAGG AAGACACATAACATTCATGTCTCTGGTTATAATGTGCCATCCCCACTTCAAAACTTTGATGAATTGAAATCAAGGTATCT TTTATGAGAATATTACATTATCCTCTGGAAACCACTTATTCTGTATGTCGTTTATTCTGCTTGTTATATTTATAAGAAAC AGTTGAAAATCTTTATCAATTCTTTACAGATATAATTGTCCGTCATATTTATTGCGCAATCTCGCAAAACTTGGATTTAG AGAACCAACACCAATCCAACGGCAGGCTATTCCAGTACTTTTACATGTATGGATTACATTCAATATTTTGGTCTTTAGAA AATTATTTATTGCTGAAATTTTGATCATAATTCATGCCCACTTGATATTTTCACCGAGATAGATGTTATCATAATATTGT TTTCTACTGCTGTTCTCCTTCACTGATTTGGGATAGGGTCGTGAATGCTTTGCTTGTGCCCCAACTGGTTCTGGAAAAAC CTTTGCTTTTGTGTGTCCCATGCTTATGAAGCTCAAGGTATTACTTATATTATCTCCAATGGTATTTTCAGTTCCCAACT TTCCATGTCCTTGATCTTATAATCAACTATGTTTTACAGGAACCTTCCAGAGATTGCATTCGGGCTGTTATCCTTTGTCA CACCCGTGAATTATCTGCTCAAACATACCGAGAGTGCAAAAAGCTTGCTAAAGGGAAAAATTTTCGTATCAAGTTATTGA CGAAACAACTTCTACGAAATGCAGATTTTTCGAAATTTCCATGTGACATACTTATATCCACACCACTTCGATTACGCATG GCTATCCGAAGGAAAAAGGTTGATCTCAGCAGGTGTGTGATGATGGGAATTTCCTATTGATTTAACTATAAAATTCTTGA AATATCAATCAAGTAATCATCACATAACACATATTTCTGGTCCATAGGGAATGCCATTAAATGCTTGTAGAGATGATTTA TAGCTGCTCTCTATGTGTCAAGTTTACCGCGGTTTTGTGAAAGTAGACAAATAAACAGTTGATTTTTCAGCTGGCTCACA AACCAGAGACCCAGACGGTTTCAGTTCTGGGCAGTTGCTTTGTGTTAAGGTCACTTAATAGTTAATATAAGTACTAGTTC AGTTGTACAAAGGTATTTCTGAAATAGCATGTACTTTCATACAAGTTGGGAGAGTCCAATGTCTATTAAATATTCCACAC AATTATTTGGTAATTGTTTCCTCTTAATTAGGTGTTACCTATTGCAATGATAAAATTGATTGTGTATAACGATTTAAATG GCATGGCCCAACTGCAGTTGATGCAGCTCACTTTAGAGGTAAACTAATTACAATGCTTTAAGCATTACAATATTCTGCAG GATGCTTTGAGCTGTATCTTACATTGTGTCTGTAAGGTCAATAGTTGTCTAGTAGATATGTGATTTATTAAGCAGCCCTT TGCATTGATATTTTTTTCATTCCAACTATTTTGTGTTCTGCAGAGTTGAGTATCTTGTCTTGGATGAATCCGATAAGTTA TTTGAACCTGACTTGTTCAAGCAGATTGATTCTGTTATTAAAGCATGCTCGAATCCCTCAATAATACGCTCCCTGTTCAG TGCCACTTTACCTGATTTTGTTGAAGATAGAGCTCGAGAACTCATGCATGATGCTGTTCGGGTAATTGTTGGCAGGAAGT AAGTTCATTACAAAAATTTACAGAACATGATGCTCCTTAGCATTACCTTAATGCGGTTCTGCTTCATTTAAATGTAAATT TGACATTTAATGCTCTTATATGAATCAGGAATACAGCTTCTGAAACAATAAAGCAAAAATTGGTGTTTACTGGAAGTGAA GAAGGAAAACTTCTGGCAATTCGTCAAAGTTTTGCAGAGGTACGTCTAGCTAAATGGCATTTGTCAGTCTGGTTTTCTTC TGCATCAAGGGCTTGTGTCCCATCCATGACTATACATTAGTCAGAGTAGGTTTGTTTGAAAAGATATCCGAAACATCACT GCAATTAATTATTAATATGTATTTTCTATTATTATTCTATCTTGTTTGTAGCCTGATGTCATTCTTGCTTATTGTGTGCT GCATATTTATTTCATTGAACATTCTGTTTTTTTCTGTGTTTGGTGTTAACTGAAACATATCGTGAACATAACATGGAATA ACGTGGTTGTACTTCACTTTAATATATTTCATATGGCTTATCAAATAAAAATTATTGCTGCTACACTTGCATTCCATTGA AACTTGTGGAAGAAGAGATGTAATGTTGTAGTGGTATTTTTTTAGTAGCTGGTCTTTGTTAACCAACCTTTTATTTTGCC TGCAATATCTTGTAGAGTCTAAATCCTCCAGTTTTGGTCTTTCTCCAAAGCAAGGAACGAGCCAAGGAGCTGTATGGTGA ACTTGCATTTGACAACATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGGTAGCTTTCAACCCCTTTAAAA GAACTAAAGTTTCTTATTGGAGAATTTGAAGAAAATCTTAAACATTTCTCACTTCCCTCTAGAAAGCTCCAAAATAAAAA GGGAAACCCATGATGCAGCCAAGATCTGGTCCCTACTAGTTGTAGGGTGAAGATGTCAAATAATGATATTGCTATTGGCA ACAATTTTTAATTTTTTTTTTGTACTTGGCTATTCTACTCATCATTATCATAGTTTGTGACAAACCTGTTTTAATATTCA ATTCACAATTCCTGTTATCATCACCAATAATACTCTAGTACTAAAACATGTTAATCTAGTAGTTATTCTGATTTCAACTA TGCTAATCTATTGAATTGTATGCAGCGAGAAAATGCTATTGATAACTTCAGAGCTGGAAAGACATGGGTTTTGATTGCTA CTGACGTGGTTGCCCGTGGCATGGATTTCAAAGCTGTCAACTGTGTGATCAATTATGATTTCCCAGATTCTGCTTCTGCA TATATCCACAGAATTGGTAGGTTCCATGATATTAAACTATTATTGTTTTTACATTTGAAAAGAAATATTGAAGGGGATTA TAGTTTGTCTAATTCTTTCATGGAGCCTTTTTTGTAAATTATTATTTGCTTAATTTTTTGCTAAGTAGAAAATTTTGATT TTTCAATAGGTCGTTCTGGCAGAGCTGGGAGGAGTGGAGAAGCGATTACATTTTACACCGAGGAAGACATTCCCTTCCTG CGGAATGTATCTAATCTTATGGCTTCATCAGGCTGCGAAGTTCCATCCTGGTTAATGGAGTTGCAAAAAAAGAAGTGGAG GAGACATCGGCCAAAAAGAGATTCAATCTCTACCTAACCAGATATTTAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0693200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCAACGACTCGTTGTTTGCCGGCATTCATTTCGATAGAAAGAAGTTCGGCGCTGATATTGCCAGGTTCCAGAAAAA AGAGAACGCTAACGATTCAGTGAAGATTTGGAGCGTGACTGAAGATGAAAGTGAGAAAACAGAAGATACAGTCAAGGAGA GAGCACCGTCTGTGAAGAAGAGGAAGCGCAAGAGAAACTCTCGCGAAGAAACGGTTGAAGGGTTTAGTGTGTTTAGAAGT TCAGCACACGAGCCACAGTTGGAATTGAATGATGAAGTCCAACCTGACGATGATGAGTCCATTCGACTGAAGAAAGAAAA AAATAGACAACTTGAGCGGGATGCTCTCTTCAGGAAGACACATAACATTCATGTCTCTGGTTATAATGTGCCATCCCCAC TTCAAAACTTTGATGAATTGAAATCAAGATATAATTGTCCGTCATATTTATTGCGCAATCTCGCAAAACTTGGATTTAGA GAACCAACACCAATCCAACGGCAGGCTATTCCAGTACTTTTACATGGTCGTGAATGCTTTGCTTGTGCCCCAACTGGTTC TGGAAAAACCTTTGCTTTTGTGTGTCCCATGCTTATGAAGCTCAAGGAACCTTCCAGAGATTGCATTCGGGCTGTTATCC TTTGTCACACCCGTGAATTATCTGCTCAAACATACCGAGAGTGCAAAAAGCTTGCTAAAGGGAAAAATTTTCGTATCAAG TTATTGACGAAACAACTTCTACGAAATGCAGATTTTTCGAAATTTCCATGTGACATACTTATATCCACACCACTTCGATT ACGCATGGCTATCCGAAGGAAAAAGGTTGATCTCAGCAGAGTTGAGTATCTTGTCTTGGATGAATCCGATAAGTTATTTG AACCTGACTTGTTCAAGCAGATTGATTCTGTTATTAAAGCATGCTCGAATCCCTCAATAATACGCTCCCTGTTCAGTGCC ACTTTACCTGATTTTGTTGAAGATAGAGCTCGAGAACTCATGCATGATGCTGTTCGGGTAATTGTTGGCAGGAAGAATAC AGCTTCTGAAACAATAAAGCAAAAATTGGTGTTTACTGGAAGTGAAGAAGGAAAACTTCTGGCAATTCGTCAAAGTTTTG CAGAGAGTCTAAATCCTCCAGTTTTGGTCTTTCTCCAAAGCAAGGAACGAGCCAAGGAGCTGTATGGTGAACTTGCATTT GACAACATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCTATTGATAACTTCAGAGCTGG AAAGACATGGGTTTTGATTGCTACTGACGTGGTTGCCCGTGGCATGGATTTCAAAGCTGTCAACTGTGTGATCAATTATG ATTTCCCAGATTCTGCTTCTGCATATATCCACAGAATTGGTCGTTCTGGCAGAGCTGGGAGGAGTGGAGAAGCGATTACA TTTTACACCGAGGAAGACATTCCCTTCCTGCGGAATGTATCTAATCTTATGGCTTCATCAGGCTGCGAAGTTCCATCCTG GTTAATGGAGTTGCAAAAAAAGAAGTGGAGGAGACATCGGCCAAAAAGAGATTCAATCTCTACCTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0693200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MANDSLFAGIHFDRKKFGADIARFQKKENANDSVKIWSVTEDESEKTEDTVKERAPSVKKRKRKRNSREETVEGFSVFRS SAHEPQLELNDEVQPDDDESIRLKKEKNRQLERDALFRKTHNIHVSGYNVPSPLQNFDELKSRYNCPSYLLRNLAKLGFR EPTPIQRQAIPVLLHGRECFACAPTGSGKTFAFVCPMLMKLKEPSRDCIRAVILCHTRELSAQTYRECKKLAKGKNFRIK LLTKQLLRNADFSKFPCDILISTPLRLRMAIRRKKVDLSRVEYLVLDESDKLFEPDLFKQIDSVIKACSNPSIIRSLFSA TLPDFVEDRARELMHDAVRVIVGRKNTASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYGELAF DNIRVDVIHSDLSQEERENAIDNFRAGKTWVLIATDVVARGMDFKAVNCVINYDFPDSASAYIHRIGRSGRAGRSGEAIT FYTEEDIPFLRNVSNLMASSGCEVPSWLMELQKKKWRRHRPKRDSIST
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
39 56 18 - –
MobiDBLite
mobidb-lite
39 72 34 - –
PANTHER
PTHR24031:SF25
53 486 434 1.5E-83 –
PANTHER
PTHR24031
53 486 434 1.5E-83 –
Gene3D
G3DSA:3.40.50.300
114 347 234 1.0E-66 –
ProSiteProfiles
PS51195
139 167 29 9.618
IPR014014
CDD
cd17957
150 343 194 2.9675E-102 –
SMART
SM00487
158 355 198 1.2E-46
IPR014001
Pfam
PF00270
163 327 165 2.3E-34
IPR011545
ProSiteProfiles
PS51192
170 340 171 25.662
IPR014001
SUPERFAMILY
SSF52540
170 485 316 5.76E-59
IPR027417
Gene3D
G3DSA:3.40.50.300
348 523 176 2.3E-51 –
ProSiteProfiles
PS51194
351 512 162 23.5
IPR001650
CDD
cd18787
352 482 131 1.33527E-56 –
Pfam
PF00271
369 473 105 2.8E-29
IPR001650
SMART
SM00490
392 473 82 7.3E-33
IPR001650

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0693200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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