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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0695900 |
| Transcript ID | LotjaGi1g1v0695900.2 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Arginine/serine-rich splicing factor, putative; TAIR: AT3G53500.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein; Swiss-Prot: sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32; TrEMBL-Plants: tr|I3S601|I3S601_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0695900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:126330405..126334721) extracted from Lotus japonicus Gifu genome v1.2.
TCCACTTCGCAAGGGTTAGGTTTCGAGAGAGAAATCAGCAAACTACCCAAAGGTACCTCCTCTCTCAATTCGATTCCATC TTCTTCTTCTTTCTTTTCTGGTTTGTGATTTCAATCGGAATTTTCCATCGCACGCTTTTTCTTGTCAATTAATTATCCCC TCAATTGAATCGATTGGATCCCTTTTGTTAATTCTCGAAAGGATTTGTTCTTGCAGTATTTTGATTTTGATTTGTTTCAA TTTGTCGTGATAATTGCAATTGGAGTTAGGGTTGTTTCTCTGTGATCAATTCCTCAGTTAATTACGCAATTTCTGTTTGT TGTGTGTTTCAGAGCTTACAAGGAATCAACAATGCCTCGCTATGATGATAAGTATGGTAACACCCGCCTCTATGTGGGTC GCTTGTCTTCCAGGACGCGTTCCCGTGATCTCGAGCGAGTCTTCAGCAGATATGGAAGGTAACTCCCCTTCTTATCACCA AAATATGCATAGATATACTCTTGGTTACTGCTCAATGCAATCTTGGGACATTGTTGTTTGCAATGCTTTGGTATCTTTTC TGTGTTTGTTCTGTCATGCCATGGTTGCTTTTGTGTATATATTGGATAGGATAGGATTGGATAGGATGAATAACTTCAAT TCTATGATTACCTCCTTTTTTTCGCTGAGAGTCGCAAAGAACTTTTGTTGTAGCACATTGTTGTTCAATTTGTGTCAATT CATGTGTGGAAAACTGATTATCATTTACAATGGGCAAGAGAGATAAATTAGGGATAAGTGGGCGTGGGGTGCCGTCCATG TGTTGCGCTGGAATTTAAGGGCTAATATACAGGCTTTTCCAAGCTTCGTATTGCGCTTGGATTTATGAATTGGTTATTCG TCATGTTATTAGTGGGAACGATATCCCTTAGGTGTCTTGTTTTAACTTGAATGATCTTGTTGAAGGTTTCTGGGGTTTTG GCCAAATCTGAAGGTCTGTGGTGGGAGGGTGTCCTTGGTGGAATTGGTGCAATCCCCCTAGTATCTCCTTTGGCGATTCT TTCTGTAATGTTATTGCGTGTTTTTATGGAATTGGCAACAATCACAAACTGGTGTTTAGTTCTGTCTTTGAGGGGCGCAG TATCATGCAGTTCCAGTAGTTAAGTAATGATGGCCTTACTGTTTATGGAAACCATTTCCGCAGAGTTCGAGACGTGGATA TGAAGCGTGATTATGCCTTTGTTGTAAGTTGTCACCCTTTCCCTGTCTCTGTTCTTTATTCCTTTTGGCTTCTATTTTTC CTCATGCTTTTGATTAAAGGTGGCTTCTAGTATCTGCTTGGGGGAAATCAGGTGTAAATGTTGGCAAGATTTATGTGTTG CTTTCCTGCCTTGGTCCTTACATCTTTTGAACAGGAATTTAGCGATCCTCGAGATGCTGATGATGCAAGATATAACTTGG ATGGACGTGATGTTGATGGAAGTCGTCTTATTGTTGAATTTGCAAAAGGGGTAGGAATACTTCCCTTTGAGGCTTATCAG TACCAGTTTTTTATTGGTTATTTTAGTCTTATTATATCATTTATAATTAACTATCAATGTGATCTTTCCTTTGGTGCTAT ACTATTGGTTAATGCATGTCTGTAAAAGAGTCGAGATATTTCATTTGAAAGAGCTTACTCCATATGTTCACATTTACATG CATTGGATCTTAAAGTTACGTACAGTGACATGATCCTTGTGTTTGTGTTTGAGCGCACCAATTTTGCAAAGGCAGTATGT GTTTGTGTCACTTTTATAATCTATAAATAAACTTTTTCCTATCCTCAGTGTCTCACCAACATTGTTTACTTCAGTGATTC TTTCGATATATTGATTCTGGTTATAAACTTTTAACTGGAATTGTCCCTCGACTGATTAGAATCCTGCCTCGAATAATATT GAAATTTTGCATTTAGTTTTTTTTGCTTCACTATTAGCTTTTGTGCTATTGAACCATCCTCTTTTTATGTACTAGTTGTT TAAATTAGAGAGTAAATTACACTCCCCTTTCCCGAGTGACGCCTAAATTACTGTCCTCTCCTTCAATGTAAATAATATCA CTAATCTTTCTTTAAGATAAACATGTGTTGCATTTTTGTCTATTACTGCCCTCTCCTTTAATGTAATTAATATCAGTACC CTGTATTTACGATATACAAGTGTTGCATTTTTTGTCTATTTGAGCAACCTTCTTGCATACCTCTTTTTCCTCCATTTGTT ATTCTTGTGATCATGAGCATATAGTTTTGAACTCATCAACCATTAGACTATGCAAGTTGAAATGAAGGGTTTTCGTACAG TTTTGAAGTGTTGATAATATGAGTGCTATAAACAACATTATATCCACTGAAGTCCTAAAATCAATAATAAGTTGCTCAAA ACTAGTTGTCTTTAACATTTAACATTTTTAGAGAAAGGAAATATATTTTGGGGGACTCAATTGTAGTTGCTTACCATCAC TAAAAGGAGACGCAATAATATTTTGGGAGACTCATCAATTGACTCTTCTGTGGATGGTATTTTATTATTGTAGTGGTTGC TTGAATACTTTTCATAGTATCAATTGTTTGTGTACTCTGGCATTCCTGATCTTGTTTCGATTGTCTTTATGTGGTTTTTA ATTATTCAGGTTCCCCGTGGTTCTCGTGAAGGGGGCGGGGGCCGGGACCGCGACCGGGAATATATGGGTCGTGGTCCACC TCCTGGATCTGGACGCTGCTTTAACTGTGGTATTGATGGCCACTGGGCTCGAGATTGCAAAGCTGGGGATTGGAAGAACA AGTGTTATAGATGTGGAGAGAGAGGTCATATAGAAAAGAACTGCAAGAACAGTCCCAAAAAGTTGAGGTAGGCTCCAAAC TGCTGCTGCATTGTCACTTTGTTTTTAACATGGCTACTGCAATATTGCTTTCTAATGGATTTTCTGAGCTTTTATACTGA TGGTTTCAATTTTACTTTTTCTGTAAGTCGACACCCTAGGAGTGATTCACGTTCACCAGTCAGGTCACGATCTCCTAGGC GTGGCAGGAGCCGGGATCGAAGTTACACCCCAGAGCGCAGCTACAGGTATAATACTGTTGGTCGTTGAGTCTAACATGTG ATGCAGTTGTTATGCTGCAAGGTTTCATTTATAATTAACATTTTTTTGTTCTAGATGTCTTGTTTGCCGTTGTATCTGTT ATCTTTCTGTGAATTCTTTTACTTTTTAAGCTAAACTTTGGGTGCCTTTGTGGTTGCCAGCCGATCAAGATCCCCAGTCA GAAGAGATCGAAGCCCTTTTCCTGAAGATCGATCAAGGAGTCCTCCCTCCAGGACAAGGAAGCATAGTCTATCTCCTGAC CTAGACAGCCCACAGAAGAGAAGTGATGCATCTCCTCCTGGCAATGATAGGTTGGCCACAACCCGAGATGGATCTGACTA CAGCGATGATGCCAGGGCGAAGAGTAGAAGCCCCGCAAGGGACCTTGATGATGATAGCCCCAAAGCTGACAATGGGCGTA GCCGCAGTGCTAGCCCTAGGGATGATGATAGGAGCCCCATTGAAGAAGATGATGACAACCACCGTCAATCTCCGTCACCT TAGAAAGTACTTCTCTTATAAATGAGCTCAGGCTGTGTTCCTGGATTTATCTTCTTTATTTATGAAACTCTGGTGTTTAT TTATAGTTATGACTTTTGAAGATTGGATTTATGTATGCTATTGTATTGATTTTGTTGGTTGCGCTTACATGCGTGGAGTC TAATTTGAACTGATGTGAGTTAAGAGATATTTGCTTTAAATTCTTTGAACTCCATTATAGGCTTTATGTCTTTCTTTTCC GCTAATTAGGTTGATAATTATTTATGTTCTTCAATTTTGTCAAGGAAAAACTTAGGTAGTTATTTGGGTACTCTTTATTA CGCCCAATTAAAAACTTACCTACCCACTATCTTAATATTTTTTGAGTAAAGCTATATGGCATGGGAAAATGGGCGACGAA GGTGACGACAAACTAATCAGACGGTTTAAATGAATTAAGTTGGAAAAAAACCAGAGTTGTTACATATTTTACTCACGGTG TGCAATTTGTGGATAGTTTGGGTCGTGCCACGCCCATATTTTTTAGTGTGGTTAATTACTACGCCCAATTAATACTCTTT ATCACACATTGAATTGCATGTTAATTGTTGCTTTCATTTTTGTACAACTCCACGTACAAGGGTAAAATATTGTGCAGTGT ACAATTAGAAATTGAGTGCATATGTTGTAAAATAGGGAAGGAGTAATCTTAAGGAAAATGTTGAGGGTGATGGTCAT
CDS sequence (LotjaGi1g1v0695900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGCAAGATTTATGTGTTGCTTTCCTGCCTTGGTCCTTACATCTTTTGAACAGGAATTTAGCGATCCTCGAGATGC TGATGATGCAAGATATAACTTGGATGGACGTGATGTTGATGGAAGTCGTCTTATTGTTGAATTTGCAAAAGGGGTTCCCC GTGGTTCTCGTGAAGGGGGCGGGGGCCGGGACCGCGACCGGGAATATATGGGTCGTGGTCCACCTCCTGGATCTGGACGC TGCTTTAACTGTGGTATTGATGGCCACTGGGCTCGAGATTGCAAAGCTGGGGATTGGAAGAACAAGTGTTATAGATGTGG AGAGAGAGGTCATATAGAAAAGAACTGCAAGAACAGTCCCAAAAAGTTGAGTCGACACCCTAGGAGTGATTCACGTTCAC CAGTCAGGTCACGATCTCCTAGGCGTGGCAGGAGCCGGGATCGAAGTTACACCCCAGAGCGCAGCTACAGCCGATCAAGA TCCCCAGTCAGAAGAGATCGAAGCCCTTTTCCTGAAGATCGATCAAGGAGTCCTCCCTCCAGGACAAGGAAGCATAGTCT ATCTCCTGACCTAGACAGCCCACAGAAGAGAAGTGATGCATCTCCTCCTGGCAATGATAGGTTGGCCACAACCCGAGATG GATCTGACTACAGCGATGATGCCAGGGCGAAGAGTAGAAGCCCCGCAAGGGACCTTGATGATGATAGCCCCAAAGCTGAC AATGGGCGTAGCCGCAGTGCTAGCCCTAGGGATGATGATAGGAGCCCCATTGAAGAAGATGATGACAACCACCGTCAATC TCCGTCACCTTAG
Protein sequence (LotjaGi1g1v0695900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLARFMCCFPALVLTSFEQEFSDPRDADDARYNLDGRDVDGSRLIVEFAKGVPRGSREGGGGRDRDREYMGRGPPPGSGR CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSRHPRSDSRSPVRSRSPRRGRSRDRSYTPERSYSRSR SPVRRDRSPFPEDRSRSPPSRTRKHSLSPDLDSPQKRSDASPPGNDRLATTRDGSDYSDDARAKSRSPARDLDDDSPKAD NGRSRSASPRDDDRSPIEEDDDNHRQSPSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 15 | 15 | - | – | |
| Phobius | 7 | 17 | 11 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Gene3D | 19 | 71 | 53 | 3.0E-6 | ||
| PANTHER | 20 | 216 | 197 | 9.5E-59 | – | |
| PANTHER | 20 | 216 | 197 | 9.5E-59 | – | |
| SUPERFAMILY | 20 | 78 | 59 | 3.1E-8 | ||
| Phobius | 23 | 270 | 248 | - | – | |
| MobiDBLite | 51 | 74 | 24 | - | – | |
| MobiDBLite | 57 | 71 | 15 | - | – | |
| SUPERFAMILY | 71 | 119 | 49 | 1.29E-12 | ||
| Gene3D | 72 | 98 | 27 | 9.6E-7 | – | |
| Pfam | 80 | 95 | 16 | 1.8E-6 | ||
| SMART | 80 | 96 | 17 | 2.9E-4 | ||
| ProSiteProfiles | 80 | 95 | 16 | 10.147 | ||
| Gene3D | 99 | 144 | 46 | 1.6E-5 | – | |
| Pfam | 101 | 118 | 18 | 9.3E-5 | ||
| ProSiteProfiles | 102 | 118 | 17 | 10.625 | ||
| SMART | 102 | 118 | 17 | 0.0016 | ||
| MobiDBLite | 114 | 137 | 24 | - | – | |
| MobiDBLite | 114 | 270 | 157 | - | – | |
| MobiDBLite | 144 | 192 | 49 | - | – | |
| MobiDBLite | 212 | 270 | 59 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0695900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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