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LotjaGi1g1v0698500.1

Overview

Field Value
Gene ID LotjaGi1g1v0698500
Transcript ID LotjaGi1g1v0698500.1
Lotus japonicus genome version Gifu v1.2
Description Histone H2B; TAIR: AT2G37470.1 Histone superfamily protein; Swiss-Prot: sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1; TrEMBL-Plants: tr|I3SY24|I3SY24_LOTJA Histone H2B; Found in the gene: LotjaGi1g1v0698500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:126648314..126650391) extracted from Lotus japonicus Gifu genome v1.2.

CATCCATCACTCGTTCTCTGCATTCACCCTCTTCCCAACAAACCACCAAATCCTCTCATCACCACCACCAATGGCTCCAG CAAAGGCCGAGAAGAAGCCAGCGGAGAAGAAACCCGCGGCGGAGAAAGCCCCGGCGGAGAAGAAACCCAAGGCCGAGAAG AAGATCGCGAAGGAAGGAGGCAGCGAGAAGAAGAAGAAGAAGAGCAAGAAGAGCGTCGAGACCTACAAGATCTACATCTT CAAGGTTCTGAAGCAGGTTCACCCTGACATTGGAATCTCCAGCAAGGCCATGGGGATCATGAACAGCTTCATCAATGACA TCTTCGAGAAGCTCGCTCAGGAGTCTTCTAGGCTCGCTCGCTACAACAAGAAGCCTACGATCACCTCTCGGGAGATTCAA ACCGCTGTGCGTTTGGTGCTTCCTGGAGAATTGGCGAAGCACGCTGTCTCTGAGGGAACCAAGGCTGTGACGAAGTTTAC CAGCTCTTAGATTAGATTTGTTTTCCCTTTTGTCTAGGGTTTCGTTTGATCCCCTTTCGAATTAGGGTTTTTTTCTGTTT TTAATTAGAGAGTGTAGATGAACCTGAAAGTTTTAAATTTCCAGTAATGAAATTAATGATTCCTTGAACCATGTTTATGT TTGAGTGAATAACCTTTGTCTCTTGTTTTTGCTTGTTAATAATCGCTTTACAGTTCCAAAACAGTGCCTGTGAAGTTTGA AGATGCAATGTTGAGTTGAAAATACAATGTTGGATTTCACATTGCCTTCAATACATCTTATTGGACTTGATATCATTTTT TTATTGCTCTAATATTTGTTTTGTTGGATGAATTTAGTGTGTTTTTGTTAGTTAAATTGGATTTGGTATATGAATGTGCT TTATTGATCATCAAACTTTGATCAGTTAGAATGATTGTTCTGGAATGCAAACCCTAAACCAAACATATTCCAAAGGCATT TTCCAATGATTAACTTTGGCAGAGTTTTGTTGATTCTAATTTAGTTGGAATTATTATTTGTGATAAGAGAAGTGTCTGCT TTTGATTGAAATGAAGCTTAATTTTTGAACAAACATGGATTTTTGAAATTTCATGGTATTGTCTTGTGAGTTTTAAGTAC TCCTACTGACTGTGTATAACTTTCTCATGTTGTTAACTGGTTTTGTTAATATTGAATCACAACAGTGTCTTCTTATGGAC ACTTGTAAATGTCCCTGACGCCTTTCTAATTCTTTGCTTTCTGTGAGAGAAAGGAATGGCATAACTTTGTCAAGTGTGAG AGACAGTTTGAGGGAACATTTTCTTCTACTCAAATGCAAGGGAATTGTCAGTTTTTATTGTCAATTCTAAACCCTTGTAC CCACCTTTCAAATTTGTTTCAGTGAGAATTAGCTAGCTTACTAGTAGGTGTGGATAAGATTTATTACTGTCCCCCAGGTA AGTTTACACTTCCCTCTACCTCCCAATTTAATTTTTGCCTGAGAAATTCCTGAACCTATGAAAATTAGTGTTCTGTCAAT GGCACTGGTGTATCTTTGTACATATTGCATACGCAGTACACACATGCCTGCAAGGCTGCTTCTGCAGAATTTTGCTCGCG TCAATTTTATATGGTTTTTGGCATATTACGCTTACTCTGTAGAGACTTCAGATTATCCATGCATATTTAGGGCTGGCAAT ATGCGGCGATGACAACATCATGTCGTGGAAGGAGATAACAGGTGGAGCCAACGATCCGCTAAGACTAACGTATCTACAAC TCCATCCCCGAGCGGCAGTCAAACGGAGGCGTGAATGCAAGATGCCAGCGGAATGATCGGCCGGATAGAGGCTAGGGCTG CTTCCTTCCCACCGCATCCTTCCTTGTGTGTCGGAGATATAAAGTGTGTGCACCAGAAAAGAACGGGAACTGGGTCGATC CGGCCCAACCCCAACCCCAAGAAAGAGGAGTGAGTTGGGTGACCCATTTTGGAATGTAGGTTGGTGGGTTACCTTCAAAT GGAAAAACAAAAACAAAAATCTTTTAGCAAGACTTATAATGATTTAAATACTCAACTTGTGCTAGACCTTATGTTTCA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0698500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTCCAGCAAAGGCCGAGAAGAAGCCAGCGGAGAAGAAACCCGCGGCGGAGAAAGCCCCGGCGGAGAAGAAACCCAA GGCCGAGAAGAAGATCGCGAAGGAAGGAGGCAGCGAGAAGAAGAAGAAGAAGAGCAAGAAGAGCGTCGAGACCTACAAGA TCTACATCTTCAAGGTTCTGAAGCAGGTTCACCCTGACATTGGAATCTCCAGCAAGGCCATGGGGATCATGAACAGCTTC ATCAATGACATCTTCGAGAAGCTCGCTCAGGAGTCTTCTAGGCTCGCTCGCTACAACAAGAAGCCTACGATCACCTCTCG GGAGATTCAAACCGCTGTGCGTTTGGTGCTTCCTGGAGAATTGGCGAAGCACGCTGTCTCTGAGGGAACCAAGGCTGTGA CGAAGTTTACCAGCTCTTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0698500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAPAKAEKKPAEKKPAAEKAPAEKKPKAEKKIAKEGGSEKKKKKSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSF INDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 48 48 - –
PANTHER
PTHR23428:SF227
2 139 138 6.0E-82 –
PANTHER
PTHR23428
2 139 138 6.0E-82
IPR000558
Gene3D
G3DSA:1.10.20.10
2 139 138 8.2E-60
IPR009072
Pfam
PF00125
6 115 110 6.4E-23
IPR007125
SUPERFAMILY
SSF47113
23 139 117 5.97E-53
IPR009072
SMART
SM00427
42 138 97 5.5E-73
IPR000558
PRINTS
PR00621
52 70 19 2.8E-49
IPR000558
PRINTS
PR00621
71 91 21 2.8E-49
IPR000558
PRINTS
PR00621
93 110 18 2.8E-49
IPR000558
ProSitePatterns
PS00357
107 129 23 -
IPR000558
PRINTS
PR00621
110 123 14 2.8E-49
IPR000558
PRINTS
PR00621
123 136 14 2.8E-49
IPR000558

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0698500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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