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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0703100 |
| Transcript ID | LotjaGi1g1v0703100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tyrosine decarboxylase family protein; TAIR: AT2G20340.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; Swiss-Prot: sp|Q8RY79|TYDC1_ARATH Tyrosine decarboxylase 1; TrEMBL-Plants: tr|G7KYF4|G7KYF4_MEDTR Tyrosine/DOPA decarboxylase; Found in the gene: LotjaGi1g1v0703100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:127134756..127140999) extracted from Lotus japonicus Gifu genome v1.2.
CCTCTTCCTGGTTGGTGTGCACTGTGCACACACACTGTGATCATCGAATGTTGTGTGGTCTATCTCTCTTCTCATCAGAG TAACACAGTGCAGTGTAAACAACAACGTCAACAGAGTCAAACGTTCGAAACTTTTGCGATGTGAGTTGCAACAAATGTAT CAAATTCATACAATGATTTTCATCTCTTTCATTCATTCAATGTTGTTGGTGTTTGAAATTGTACAGGGAAGGAAATGGGT TGAGACCAATGGATGCTGAGCAACTCAGAGAGCAGGGTCATAAGATGGTTGATTTCATTGCTGATTACTACAAAACCATT GAAAATTACCCAGTTCTTAGCCAAGTTGAGGTACTACCAGCTAAATGAATGACTGTATTGCAGTGATTTTAGCTTTCTTA TTGGAATGAAACATAGAAGATAGTGAGTTTCTTTAATATATGGTTATAGATGATGATTATGATTGCCCCATGTTGTTTTT TATTGCTTATAGAGCTTGTTTGGATGCAGAGTAAAAAGCACTTATTGGAATTTATCCAGTGCTTTTTTCTAGTAGATAAG CTCCAATAAGTGCGCTTTTAGTCTGTATCCAAGCGGAATGATAATATTTCTTACTTGCTTGTGGTCATTGTGAACATGTC CTTTTGTTACAAGATTTTACCTTGTTGCAGCCAGGTTATCTTGGGAAGCTTTTACCTGATTCTGCTCCTACTTATCCTGA GTCATTGCAACAGGTTTTGGATGGTGAAATTTCTTACTTGGGTTTCTGAATTAACCTTTTCTTTCATTCAATATATTATT ATGTCATGTTTTGTTTGTCATAGAATTATGTGACCTATTCTAGCATGATATTATTAAATTACTCTCTAAGACAGTTTTTT TTTTCTTTTACTTTGTTTGAGATGGCTGAAACATATTTCATATTGTAGATGTAAAGGAAAAGATATTGCCAGGGGTGACA CATTGGCAAAGCCCAAATTATTTTGCATATTTTCCTTCCAACAGTAGCATTGCTGGATTTCTAGGAGAGATGCTCAGTGC TGGTATTAACATTGTGGGTTTCAGCTGGATAACTTCTCCTGCTGCAACCGAACTCGAAACAATTGTCCTGGACTGGCTTG CCAAGGCGCTCAATTTGCCTGATAATTTCTATTCTACTGGTAAGGTCATGGGTTTGGAGGAGTTTGTTGGCTCATGATTC ATGCTTGATTTCATTAAGCTGCTAATTGAATGAAGTTCATGGATGATCAAAATTTGAAACTAAACGGCATATGGACCCGG GAAAGTTTATTCATAGAAACTCAAATATTGAGATATTTGAACTTGTGAAACATGGGATGTGATTTTGTTGCAGGGCAAGG TGGTGGAGTTATACAGGGAACAGCTAGTGAGGCTGTGCTAGTTGTCTTGGTGGCCGCCCGTGACAAGATATTGAGGAGGG TTGGAAGGGATGCCCTTCCTAAGCTTGTGACGTATGCATCAGATCAAACACACTCTGCTTTACAAAAAGCTTGCCAGGTA CCTTCAGTACCACATAAAAATGAAAAGAGCCATCTAGTCATTATAAATGATATATGGTTCCCTTTTTCTCCTTCGCTGTA GTATGTTTTCCATCAACTAACTGGTCATTGATAACTCTTGTTGACAATTGTTAATTGCTTTCTGATTTATTTAAATGCCA CCAGCCATATCTTAAACTTAAATTTTTATTCATTGGTATTTTATGTCATGGTCAATGAGACCTTTTACTTTTTTAAAATC TACTATCTTTGATTCTGAACTGTTTTTGACTTTGTTATTTTATCTGGGGAAGGGACTGTTTAAATTATATTTTAATTCAA TATTCATACTTGTAAATAATTTACAAAATGATGAAATTGAATAGTTTTCTTGACTCATCTTAGAAAATGCAAACCTATTC TTATGTATTAAAATGTTTGGGGTTATTATCCCCTTGTGGTTGTATTAGTACATTATATTAAGTCAAATCACCATCTGATA TCTAAATTATAGTTATAGTCTTTTGATATTCTACGGTATTTTTATACTAAGTTTTCTAACCCTTGACACATGTGGTAAAC AAGCTGTCTTTTATTAACGGAATGGGTCTTAGCATTGAACCTCACATTTTGGAAAAGAAGTCTTTCAAAGTGATGCATGG TTGCATCCTTGAAGATAGCATTATCATCAAGTAGATCATTTTGATGATTTATTACAATGGTTTTTTAATTTTCATTGGCA GATAGCTGGACTTAATCCAGAGCTTTGCAGGTTGCTTAAAACTGATTCTTCCACAAATTTTGCGCTTTCTCCTGATGTAC TTTCTGAAGCAATTTCAAGAGACATTGCCAGCGGTCTTATTCCCTTTTTCTTGTGTGCTACTGTAAGAATTAATGGCTTC TAATATTAGTTTGTGCTAAATTGCTTTACAGTGCATTAACTTAATTATCCATCTTTTGTGTGAGTGTGTGTCTTATATCC AAGATTTTTTGTTTATCTTTTATCTTACCAGTATATTGGATTTACAAATTAGAAACTACTCAACTCATCTGATCATTGGG TTAAGGGATCATATATCCTTGTTGTAGGAGCTTTGTTTCTTCATTGTTTATTGCTGGACAGATGTGATTCCAGAGTCCAG AGGTCAATAGCCCTTAGATTCATGAAAAAATTTCTTTCTGGATCTTAAATTGTAAAGTCAAGGATATTTCTGGTTGGATG TTGTGTGTATTAATCTGATCATTGGGTTAAGGGATCATATATCCTTGTTGATTTCTCTAAATGGATGATTAATGTGGTAA ACATTTGGCGCACTAATGTTCATTCTGTACTTCTGTTTTACTTGTTGATGGACGAGGACGTATCTGAATATTTATATCAC TTTGAGGTGCTTCTAGAGTCTATTGTTGGTGGATATTAAATTTCTGGTATTGACATCAACTCTGCATTTATGCATGCAGG TTGGTACGACTTCATCAACAGCAGTTGATCCTCTGCCTGCATTGGCAGAAATAGCTAAGGTAATATATTGATTCTGTAAT TGGATTGGTGATAAAACTTGCTAGTTCAACTGCAACCATTGATGCATTGTAGTGAGGATATTAACAACAAACTATTTAAA AAAAGTTATGTGACCCATATAAGGAACTAGGGAAACAGCTAGATAGATGAAAACTGGAAGTGATTTTGCAGTAAGTCAGA AACTCAACGAGATAATGACATTATGGAGATTGACAACAAAGTGTTTAAAAAAAGTATGTGACAGTATGAGGAACTAGGAA GACAGCTAGATAGATGAAAACTGGAAATGATTATGCTGTAAGTTAGGAATTCAACGAAATAATGATTTTGTGGTTTGTGG AGTTGCAACAGAGAAAAAATTGCGACATGAATTTTCCAACTCTTAGACTAAGCCCTTTTTTTGTCATGATCTAAGAGGTT AGGTTCTTGAACATCCATCCACAATTATAAGCTTTTGTAGGATTGCCTATGAGATAACCTGTATAAAATGTTTCTCATTT TTGAGTCCGCATTACCATATGATAATGCTTGTTATGCATGTCTTCTTGGCAGACCAACACAATCTGGTTTCATGTGGATG CTGCATATGCTGGCAGTGCCTCTATATGTCCAGAGTACCGCCACCACATTGATGGTGTTGAAGAAGCAGACTCTTTTAAC ATGAATGCACATAAATGGTTCTTGACAAATTTTGACTGTTCACTACTTTGGGTGAAGGTATCAATAATAACTTTTCTCAA TGTCACTTTTGCTTCTATGTTTGTAACATTTCAATTTACTACAAAATAAAGAATGTACATAAATCAAAGTGTATATTCTC ATGCTTGTCATAACAGGACAGGAGTGCTCTGATCCAGTCACTGTCTACAAATCCTGAATTTCTGAAAAACAAGGTTAAGT TTCAATTTTCATGCTTGTGGTTTTTATTGAAGTTTTGCTGTGAGAGGTTTTCAAACTCTTGTATCACCTTAGTTTTTTTC TTTGTGCATGTGTGGAGCTTTCAATACATTTGTAATTTCTTTTATTATTGTTAAACTAGATTTCATTCAGTCAAGGATAT TATCATATTTGAGTATCACATGAAATTTATAAGTTTATTCTTCAGACTTGAATAATTTTGAAAAATATCAATGGTTATTC ATTGTGTCTAATAGGAAGGGCTATTCGGCTTTGAAGGAACCTAAAATAATATTTATCCAGGTACAAAATTGTGTTATTAT AATATGGTACTCTAGAGTTACCTTACATTGTAAGCTATTAAAGAAGGAAAGGGGGAAAAATAAAAGAAACAAACAAAATT GCAGCACCTGCAATATCCTTCTTCCTCTTTTTCCTCTTCCTATGTAGACCTGCTTCAAATGCAATGAGAAAAAAATACCT TTTGGATGACCAAGAAATAAACCTGGAATTATTTGTTTGCCAATTCTTTTTCTGGTATATCCCTCTTTTCTTCCTTTCAT GGATTTGGTCTTATCTTGAGGGAACAGGGTCATGTGGGAAATGTATCTTAGACAAGAAGCAAGTGTTTAAAATGTTGCAG ATACTGTTATTAAGCCCTTGTCTAATTGTCTGCTTATGCTATTGAATTTGCAGGCTACTCAAGGAAACCTGGTCATAGAT TACAAAGATTGGCAAATTCCTCTCGGGCGTCGCTTTAGGTGTGTCTTTCAAAGCTTTCCTTTAGAAACACTTTGTCACTG CTTTCTATTAATAGAATGATATGTTTATGTGATATTGGAATCTCTCGTTCCCTCTCAACTTGACTTATTTTGTAGAGAGA AAATTTACATGCATATATACAGATGATCATGCATATTAGAAGCATCATTCATGCCTTTCGGACTCCTGACTCATTTAAAA CTGAATGTACTCTTTATTTAATAAGTGATTGTGATTTGTAGTATAAGTATTTCTTGAATTTCATGAATTTGTATGTGTAC TGGTTTCTTTCTTTCTTTCTTCGCTTTTCCATTTGAAAGGTTGCAAGAACCTCAGATGTTCTAATTTCTGTTAAATCCTT AGTACCTCTTCCTAATAAAAATTTGTATAAATGTCATCGGACTTGTAACATTGCTAATTGGACTTACACTGGGCATCAGA TCATTAAAACTGTGGATGGTGTTGAGACTTTATGGATTGGAAGGTCTGCAAAGTCACATAAGAAGCCATATTGCGATGGC TGCTTATTTTGAGGAACTTGTTGGTCAGGACACAAGATTCAAGGTATTCTTCCTTGTAAAAACCTAATTCACTATTCTCA AATAAATTGCATAATACATCGAATGGATAACTCTATCCTGGTGTTAGAGTTTTGCTGTAAAATAATGGTTTTGAAGTCAA AGATGCCAAATATGAATGTCTTATCTTTGTATTTAAGTATCTGCATTATATCGCGAAAAAACTTGCAATAAATCATGTAC AACGCAGGCCGTTGCACCCCGCACATTCTCTTTAATTTGCTTCCGGCTTTTGCCTCCCTCCAACTCTGAAGATCATGGCA ATAAGCTAAATCGTGATCTACTGGAGTCAGTAAATTCAACAGGAAAAATTTTCATAACACACACGGTATGCATTCTTCAA AGTTTTGTTCTGTTTTCACCAATGTATTTTTCCTTGACAATAACCTACATGTGCAGGTTCTATCAGGTGAGTACATTCTA CGTCTTGCAGTAGGAGCACCATTGACAGAAAAGAGGCATGTCACCATGGCGTGGCAAATTTTGCAAGATAAAGCCACTGC TCTACTTGAGAGTTTATAGGATGAGTCTGCTCTGCTCCCAGCATCAACCATTGCTTTCTGAAACATCCAAGGTTTCACAT GACAACATTGTTTTGTGATTCTTTTCTCTACACATAGCGGAAGCTTTATAGCACCCGGTTTGCTCTTATTATTATACATA AATCCTTCATTTGGCAGTGTTGTCTTGTGCTGTAAGCCTGTAAGTTTGTCTTAAGCAGCATTCTTTTTCTTTAACTCATC AATAATTGCCAATTGTAGACAGCACAGAGCAAACCCTGCAACAAAATCTCTTGTAATTCATTACTATTGTTTTTGTCAAT GTGAAACAAGCCCCCATTCGATTGGATTCTCATATGTTAAAATTTCATGTCATGTGAAAATTTTGAAACTTTTTTTTCCT CATAGACACTAAATATGTTGGGTTCTATTAAAATTTGTATTTAGTTTATAAAAAAAGAAATGTATACGAAGTTCTATGAT GGCC
CDS sequence (LotjaGi1g1v0703100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGAAATGGGTTGAGACCAATGGATGCTGAGCAACTCAGAGAGCAGGGTCATAAGATGGTTGATTTCATTGCTGA TTACTACAAAACCATTGAAAATTACCCAGTTCTTAGCCAAGTTGAGCCAGGTTATCTTGGGAAGCTTTTACCTGATTCTG CTCCTACTTATCCTGAGTCATTGCAACAGGTTTTGGATGATGTAAAGGAAAAGATATTGCCAGGGGTGACACATTGGCAA AGCCCAAATTATTTTGCATATTTTCCTTCCAACAGTAGCATTGCTGGATTTCTAGGAGAGATGCTCAGTGCTGGTATTAA CATTGTGGGTTTCAGCTGGATAACTTCTCCTGCTGCAACCGAACTCGAAACAATTGTCCTGGACTGGCTTGCCAAGGCGC TCAATTTGCCTGATAATTTCTATTCTACTGGGCAAGGTGGTGGAGTTATACAGGGAACAGCTAGTGAGGCTGTGCTAGTT GTCTTGGTGGCCGCCCGTGACAAGATATTGAGGAGGGTTGGAAGGGATGCCCTTCCTAAGCTTGTGACGTATGCATCAGA TCAAACACACTCTGCTTTACAAAAAGCTTGCCAGATAGCTGGACTTAATCCAGAGCTTTGCAGGTTGCTTAAAACTGATT CTTCCACAAATTTTGCGCTTTCTCCTGATGTACTTTCTGAAGCAATTTCAAGAGACATTGCCAGCGGTCTTATTCCCTTT TTCTTGTGTGCTACTGTTGGTACGACTTCATCAACAGCAGTTGATCCTCTGCCTGCATTGGCAGAAATAGCTAAGACCAA CACAATCTGGTTTCATGTGGATGCTGCATATGCTGGCAGTGCCTCTATATGTCCAGAGTACCGCCACCACATTGATGGTG TTGAAGAAGCAGACTCTTTTAACATGAATGCACATAAATGGTTCTTGACAAATTTTGACTGTTCACTACTTTGGGTGAAG GACAGGAGTGCTCTGATCCAGTCACTGTCTACAAATCCTGAATTTCTGAAAAACAAGGCTACTCAAGGAAACCTGGTCAT AGATTACAAAGATTGGCAAATTCCTCTCGGGCGTCGCTTTAGATCATTAAAACTGTGGATGGTGTTGAGACTTTATGGAT TGGAAGGTCTGCAAAGTCACATAAGAAGCCATATTGCGATGGCTGCTTATTTTGAGGAACTTGTTGGTCAGGACACAAGA TTCAAGGCCGTTGCACCCCGCACATTCTCTTTAATTTGCTTCCGGCTTTTGCCTCCCTCCAACTCTGAAGATCATGGCAA TAAGCTAAATCGTGATCTACTGGAGTCAGTAAATTCAACAGGAAAAATTTTCATAACACACACGGTTCTATCAGGTGAGT ACATTCTACGTCTTGCAGTAGGAGCACCATTGACAGAAAAGAGGCATGTCACCATGGCGTGGCAAATTTTGCAAGATAAA GCCACTGCTCTACTTGAGAGTTTATAG
Protein sequence (LotjaGi1g1v0703100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGNGLRPMDAEQLREQGHKMVDFIADYYKTIENYPVLSQVEPGYLGKLLPDSAPTYPESLQQVLDDVKEKILPGVTHWQ SPNYFAYFPSNSSIAGFLGEMLSAGINIVGFSWITSPAATELETIVLDWLAKALNLPDNFYSTGQGGGVIQGTASEAVLV VLVAARDKILRRVGRDALPKLVTYASDQTHSALQKACQIAGLNPELCRLLKTDSSTNFALSPDVLSEAISRDIASGLIPF FLCATVGTTSSTAVDPLPALAEIAKTNTIWFHVDAAYAGSASICPEYRHHIDGVEEADSFNMNAHKWFLTNFDCSLLWVK DRSALIQSLSTNPEFLKNKATQGNLVIDYKDWQIPLGRRFRSLKLWMVLRLYGLEGLQSHIRSHIAMAAYFEELVGQDTR FKAVAPRTFSLICFRLLPPSNSEDHGNKLNRDLLESVNSTGKIFITHTVLSGEYILRLAVGAPLTEKRHVTMAWQILQDK ATALLESL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 89 | 85 | 4.4E-36 | – | |
| PANTHER | 6 | 484 | 479 | 4.1E-234 | – | |
| PANTHER | 6 | 484 | 479 | 4.1E-234 | – | |
| SUPERFAMILY | 9 | 481 | 473 | 3.69E-141 | ||
| PRINTS | 14 | 33 | 20 | 5.1E-78 | ||
| PRINTS | 37 | 54 | 18 | 5.1E-78 | ||
| Pfam | 43 | 416 | 374 | 3.7E-119 | ||
| PRINTS | 55 | 74 | 20 | 5.1E-78 | ||
| PRINTS | 81 | 100 | 20 | 5.1E-78 | ||
| CDD | 84 | 479 | 396 | 5.21186E-117 | – | |
| Gene3D | 90 | 382 | 293 | 8.6E-105 | ||
| PRINTS | 102 | 120 | 19 | 5.1E-78 | ||
| PRINTS | 121 | 140 | 20 | 5.1E-78 | ||
| PRINTS | 146 | 166 | 21 | 5.1E-78 | ||
| ProSitePatterns | 299 | 320 | 22 | - | ||
| PRINTS | 355 | 370 | 16 | 5.1E-78 | ||
| Gene3D | 383 | 488 | 106 | 1.7E-33 | ||
| PRINTS | 398 | 417 | 20 | 5.1E-78 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Cellular amino acid metabolic process | The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. | ||
| Molecular function | Carboxy-lyase activity | Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. | ||
| Biological process | Carboxylic acid metabolic process | The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi1g1v0703100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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