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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0706500 |
| Transcript ID | LotjaGi1g1v0706500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat protein 7A; TAIR: AT4G28600.1 no pollen germination related 2; Swiss-Prot: sp|Q66GN3|NPGR2_ARATH Protein NPGR2; TrEMBL-Plants: tr|A0A072U4B1|A0A072U4B1_MEDTR TPR 7B-like protein; Found in the gene: LotjaGi1g1v0706500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:127481431..127487503) extracted from Lotus japonicus Gifu genome v1.2.
AATAAATAAAGAAAGAAAAGAAAAAAGAAAAAGGCGATAAAAAAGGAAAAACCGAATCAGTGAAAGAAGCTTTTCATTGA TTCAAAGGTAACCTTTGATTACAGAAAGAAAGAAAGAAATTGAACAATGGCTTTCACTGTTCATATCTCCTTCCCTTCTT CAACTCTCTGCTTTTCTTTCTCAATAAACAAAAGTTTAGTTTATTCCTATTTCTTCTTTTTCCTCTGTCTCTTTCTCTCT TTACTGTTCAATCCTATTTCTCAGGTTCATACAAATTCAAACAGCTCCAAATTCTGTAAGAAAATTTTCATTTATCTCTA TTTTTTTATTTCACATTTGCTGACTCATTTTATGTCAATTTCATCATCACGCTACTTATCTTATTCTTTCAATTAATTCT GTTAGCTTTATCATCGGAATCCATGGATTTATTAGTTTCTTTATCATACCTAATTCGAAATTTGAATCTAACAGATCAGG ATTTGCGGTTAAATCTGTATTAATTTATTAATTGATCATGAAATTTGTGGTGGTGATGATGATTGTGAATTTGTGATGCC ATGTGTGGATGACAGTGCTGTGGCGGTGAGGTTTTTGAGTGAAGAGAGAGAGAGAGCATGGGGAGTAGGAGATTGGAGAA GATGATCAAGTGTTTCTGCTCCGGGGAGCAGGTAAGAAGAGAGGCGGATGAATTGGTTCCTTATTCGGAATCTCTGGCGA CCAAGGATTACTTTTCGTCGACTGCGAGCGGCGTTTCTGGCCAAGATGGAAGAGTTGAGAGGAGGCCGGATTCCGGTAAT ATAGAAGAAGCCGAATCCTCGTTACGCGAGAGCGGCAACTTGAACTATGAGGTTGGCTCCTTGTTCTATTAACTGTTTGA TGATATGCTGGATAGTTTAGACTTTTAATACTGGATAATTTTCATATGTGTGCCTGTCTATGATATCGTTAAAGATGATC TCATTATCAATAGTATCCCTCGTAATTAAGTTTTTGATCGAGGTTAGTGGTGTAGTGTTGTGATCCATATAGCTGACCTT ACTTAGTGGGATAAGGCTTTTGTTGTTGTTGTTGTTGTTGCCGGTCTATACCCAGGTAGTCATGTCAGGTTTATTTCCCC ATGTTTGTTTCGTAGGTTATTCATAGATCATATTCATAGTTTATATAAAACACTGACAGAATATGTGGAAATTGTTTTCA GTGCTCTTGTAGTACAAACTTCCCACCTTAAAATTAAGACACCAAGTATGAATGGTTATATATATTATGTTTTTAATGAA AAGTAGAAGAAAACTGACAAATTAGAGATATATATTTTAGAATACCGAAAGTTTACTCAAAGTTAAGAGCTCACTGCATA CATCTATTAGGATTTTAATGGAGTCATTCATCTTACCTATTTTTTATCATGTATGTATATAATCGAGGCCGTAGTCTCTT TCACGTCATGGCTGATGATGTATGCAGGTTTATGATGATCTATTAATTCTATTTATTGGACTTGATGCAATCTGAGATAG TACTTGTAATCTGCAGGAAGCTAGAGCTTTATTAGGAAGATATGAATTTCAGGAAGGAAATATAGAAGCCGCTTTACATG TTTTTGAAGGAATAGCCATTGTTCCTTTGGCTCCCAAGATAAAAGATTTCTTTGTCAAAAGCCAAGATCTTGCCAAACGC AAAGGACGCCGTAGGAGACGCTCTCAGAATTATGATACTCTGCCAATGGCTATACATACGGCTGGATTACTGTTAGAAGC AGTTTTCTTAAAAGCAAAATGTTTGCAGGTTCTTGGAAGGTTTAAAGGTATCTTCACTGGTTGCTTGATCAATATATTTG CGCTTTATTTTTTAACTTAAGGTACCTGTGGCTTGTTATGCATATTTTTCTTTTGATCTGCACATTAGCATGTCCTTTAT CTGTCATCTTCCTTATTTTGCACTGATTAGTTTATGTTATAGGATTTTGGTTTATCTGCTATGCTTCTTCTTTTTAACTA TCAGATTTAGTTGTCATGCTATGTCATTGTGAGGGACCTGCTTTGTAGAGTCTGGAACTTTTCCCATCACAATGGGACAT GCATTAGCGCTCTTGATTATCTTAGTATATTTTTTCACCCAATACATCACATGAGTTGATAATTGTGTTAAAAAATCTGG CTTCGTTATTTGATTGTATATATTTCTAGTTTGGACTTACTATGAAATTTATCTTTTCCAATCTTTTTTTATAACACAAA AAATAATCTTACTTCAAATAAATATTTTGTTTCTGCTTTTTCTTTAATGGAGAAGCACCGATTTCTTGTTTCTCTTTGAC TGACATCAATTTTCTTTTTCCTGTGACATTAGCAGTTTTATGTCGTTCGTCAGACACCCCAAAAATTAAAATTCATGTTT CTTGGAAGTATAACGCTGATAAGTGCCCTAAAGAAAATAGTTAAGGAATAAAAAATCAAATGTTTTTATTGAAAAGTAAT ATATTCAACGTTATCAGCGCATTAAAGAGTGTACTTTTTGAAAAATATTTTTTCCTTAGCTAGTACCCTTAAGAGAACTC ATCAGTAAGACTTTTTTCTCAATAGCCAAAGAGTAGCTATTTTGATTTCAAAATATGACTAAAAAGTGAAACACTCGCAC AAATCAGTCTTTTGACACTGTCAAACATCATGGCATTTCCCTTAGAATTCTGAGGTTTTATTCAATTTAACGGAAGTTTC TAGCTGTGAACTCAAAGTGCTATCTGATGTATATTTCCAATCATTCTTGCAGAAGCTGCCCAAACATGCAAAGTTATTCT GGACATAATTGAGTCTTCATTACCTTATGGCTTGCCAGAAAACTTTGGTGCAGAATGTAAATTGCAGGAAACTTTGAGTA AGGCAGTAGAGCTGCTTCCAGAATTATGGAAACTTGCTCACTGTACCGGTGAAGTTATTTTGTCTTACCGGCGTGCACTC CTTCATAAATGGAATCTTGATGCAGAGACTGTAGCAAAAATTCAGAAAGAATTTGCTGTTTTTCTTCTATATAGTGGAGG GGAAGAAATTCCCACAGATCTTCGTTCCCATATGGACAATTCTTTTGTACCCAGAAGCAACATAGAAGAGGCTATACTTC TTTTGATGATTTTGCTTAGAAGAGTTTCTCTAAATAAAATTGAGTGGGATCCTTCAATTTTGGACCACCTTTCATTTGCT CTATCTGTTTCAGGGGATTTGACAGCATTAGCCAATCAATGGGAAGAATTACTTCCTGGTACCGTTGATCGAAGAGAAAG GTACCATGCCCTTGCTCTTTGTTATTATGGAGCAGGTAAGGACATGGTAGCACTGAATCTTCTGAGAAGATTATTGAATA GCAGAGAGAATCCAAGTCATGTTCCTGCTTTGTTAATGGCTTCTAAGATATGTAGTGAGAACCCTGATTTTGCAAAAGAT GGGGAAAGCTTTTCTCGCAGAGCGCTTGAGAACTTGGATGGAAGATGTGATCAGTTGGAAAATCTTGCCAAATGCTTACT TGGTGTTTCACTTTCAACATACTCAAGATTTACTGTCTCTGATTCTGAGAGGTCTGAGAGACAATATGAGGCACTTCATT CCTTGGAAACTGCAAGCAGAATGACCAGAACTAGTGACCCTCTTATACTATACTATTTAAGTTTAGAATATGCGGACCAA AGGAAGTTGGATGCTGCACTTCATTATGCAAAACGCTTTCTAAACTTGGAAGCTGGGTCTAATATTAAAGGTTGGTTATT GTTGGCCAGGATATTATCAGCTCAAAAACAGTTTCTGGATGCTGAGTCTGTTGTTGATGCTGCTTTGGACCAGATTGGAA TATGGGATCAAGGAGATTTATTGCGAACAAAAGCTAAACTGAAAATTGCACAGGGCCAGTTAACAAGTGCCATTGAAACA TATATTCAGCTTCTTTCTATTCTCCTAGTTCAGAGAAAAACTTCTGGCTCAATACAGAAGCTATATAAGGTTTGTTGGTT GCTGTTCTTGGTATTTATAATTCTGAATCATAGCTTTTTATTTTTCTGATCATTATTGCCAGAAATAGCTGGGTGTGATC TCTCATCAACTTGTGATATTTATCTGCTGCAGAAATTTAAGATCATGTTTTTGTGATTGTGGGTGAAAGGAAGTGTCCTG ATCCATACCTGACACCTGATCATGTTGATAGGAACAATAATAGTGAGAGTAGTTGGAAAAAATGTCTTGGAAAGCCAAAT ATGTCATGAATGTTCTCTTAGATGGAATCCAAACACACTCTTATAACACTATAGCATTTGGACACTCTTTCATCCATCTA TTTCAGAAGGTGTATTGCGTCTAGCTCTTTACCTTTTTTTATGTACTCTGTAACAGGACTACAGAGATTATGCTAGGAAC TTGGAAGAGGAAATATGGCATGATCTTGCATATGCATACATAAGTCTGTCACAGTGGCACGATGCAGAGGTGTGTCTTTC AAAATCTAAGGCCTTCAGACAATACACCGCTTCTAGATGTCATGTAATAGGTAAATGTATGATATGATTTATTTATGTTT TAAGTTATATGATATTGGGGAATGACACTAACTGATTATAATCACTTGAAACTTGAAAGTAACTGACCTGGTCGATATGG GTGGAATTGTGATATAGTATTCTCAGTTTATAGCTATGTCATAAGTTGATTGCAGTGAGGCGCCAAGAGAGAAGAGAGCT TGGCCGCGAAACAAGCAAGTCCTATAAAACAACTAAATAGGTCTACAGTACCACAAATCAATAATATTATGATAAACTAA CCTATGCCTATTTGCACAACAAAAACGTAATTCACAAAGTATGATAGGCGGAAGAAACTCTGGAACTCTTGTTAATTAGG TCTTTCTAATATGACATTTCAGATTTATGGATGCACTATGTGGATTTGGTTTTTATTGTATGTCTTGTGTGTGCTTCATT TTAATCTCATTATTCTCTTTTTTCAATGTCGGAAAAAAGATGACAAACATTAGAATGCTCTCACTGCTGTATTTTTTTTG TCACTGCTAGTTCCACTGGCTTGCCACCTTTGTTTTCCTGTCACCTTCAATGTTTGATTTTAGTAAAGTGCCCAAAATCA TCATATGAATTTGATAAATGTAAAAAAGAAGGGGAGGGAATAGATGTTAGAGATAAACAGTTCTTTTTGAATTTTAGTTG CTTCATACTTGCATATAATGAGTTCTGTTTGTTCGATTTCACAGGTACAATGCACGAAGCAAAGGGCCTATACAAAGAGG CTGTAAAAGCTTTTCGCGATGCTTTGAACATTGATCCCAGACATGTACCCAGCTTGATATCCACTGCTGTGGCTCTTAGA CGGTGGAGTAATCAATCAGATCCTGTTGTCAGAAGCTTTCTGATGGATGCACTACGTTATGACAGATTGAATGCTTCTGC TTGGTATAATCTCGGCATTCTTCACAAGGCTGAAGGTAGAGTGCTAGAAGCTGTAGAATGTTTTCAGGCAGCAAATTCTC TTGAAGAAACAGCACCAATTGAACCTTTCAGATGACTGAATCTGCAAGCATTTTTCGTGATGACATCTCACGCTTGATTG TTCATGCATGATCCTCATTTGTTCTTGACGTCAGTATAGGTCAATAAGAAATGCACACTTCATGATTTGGTTTTCTTTCC ACTGCTGTGAGCTGCTGTCCTCCTTTTTTCGGTTGTAGCTCAAGGTTGAACGCCAACTTTTCTTTTAAAATTGTATATTT TTCTTCATTTTTTTCCTTTATTGAGATAAATTCCATTAAAAATAGTGGACCTGGAGTGCATCCACCGAAAGGTGACATGT ATTTGTTGAAGGAAATGTGTAACTGTTGATTAGGATTCTCAACCGTTAGAAAAAGAACTTTGGTATGATGTGAATGTGAT TCTTGATCCAACATATCTACTATCAATATGTTTTTTGTCTTGCACTACATTCACCTGGTTCAACCAAAGAATTCTGTCTA AAATGGACTGGTTCAGTTTAATGCACACCTTTAGACATGCAATTTTTAAAATTGAAGAGTTTAATGCACACAT
CDS sequence (LotjaGi1g1v0706500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAGTAGGAGATTGGAGAAGATGATCAAGTGTTTCTGCTCCGGGGAGCAGGTAAGAAGAGAGGCGGATGAATTGGT TCCTTATTCGGAATCTCTGGCGACCAAGGATTACTTTTCGTCGACTGCGAGCGGCGTTTCTGGCCAAGATGGAAGAGTTG AGAGGAGGCCGGATTCCGGTAATATAGAAGAAGCCGAATCCTCGTTACGCGAGAGCGGCAACTTGAACTATGAGGAAGCT AGAGCTTTATTAGGAAGATATGAATTTCAGGAAGGAAATATAGAAGCCGCTTTACATGTTTTTGAAGGAATAGCCATTGT TCCTTTGGCTCCCAAGATAAAAGATTTCTTTGTCAAAAGCCAAGATCTTGCCAAACGCAAAGGACGCCGTAGGAGACGCT CTCAGAATTATGATACTCTGCCAATGGCTATACATACGGCTGGATTACTGTTAGAAGCAGTTTTCTTAAAAGCAAAATGT TTGCAGGTTCTTGGAAGGTTTAAAGAAGCTGCCCAAACATGCAAAGTTATTCTGGACATAATTGAGTCTTCATTACCTTA TGGCTTGCCAGAAAACTTTGGTGCAGAATGTAAATTGCAGGAAACTTTGAGTAAGGCAGTAGAGCTGCTTCCAGAATTAT GGAAACTTGCTCACTGTACCGGTGAAGTTATTTTGTCTTACCGGCGTGCACTCCTTCATAAATGGAATCTTGATGCAGAG ACTGTAGCAAAAATTCAGAAAGAATTTGCTGTTTTTCTTCTATATAGTGGAGGGGAAGAAATTCCCACAGATCTTCGTTC CCATATGGACAATTCTTTTGTACCCAGAAGCAACATAGAAGAGGCTATACTTCTTTTGATGATTTTGCTTAGAAGAGTTT CTCTAAATAAAATTGAGTGGGATCCTTCAATTTTGGACCACCTTTCATTTGCTCTATCTGTTTCAGGGGATTTGACAGCA TTAGCCAATCAATGGGAAGAATTACTTCCTGGTACCGTTGATCGAAGAGAAAGGTACCATGCCCTTGCTCTTTGTTATTA TGGAGCAGGTAAGGACATGGTAGCACTGAATCTTCTGAGAAGATTATTGAATAGCAGAGAGAATCCAAGTCATGTTCCTG CTTTGTTAATGGCTTCTAAGATATGTAGTGAGAACCCTGATTTTGCAAAAGATGGGGAAAGCTTTTCTCGCAGAGCGCTT GAGAACTTGGATGGAAGATGTGATCAGTTGGAAAATCTTGCCAAATGCTTACTTGGTGTTTCACTTTCAACATACTCAAG ATTTACTGTCTCTGATTCTGAGAGGTCTGAGAGACAATATGAGGCACTTCATTCCTTGGAAACTGCAAGCAGAATGACCA GAACTAGTGACCCTCTTATACTATACTATTTAAGTTTAGAATATGCGGACCAAAGGAAGTTGGATGCTGCACTTCATTAT GCAAAACGCTTTCTAAACTTGGAAGCTGGGTCTAATATTAAAGGTTGGTTATTGTTGGCCAGGATATTATCAGCTCAAAA ACAGTTTCTGGATGCTGAGTCTGTTGTTGATGCTGCTTTGGACCAGATTGGAATATGGGATCAAGGAGATTTATTGCGAA CAAAAGCTAAACTGAAAATTGCACAGGGCCAGTTAACAAGTGCCATTGAAACATATATTCAGCTTCTTTCTATTCTCCTA GTTCAGAGAAAAACTTCTGGCTCAATACAGAAGCTATATAAGGACTACAGAGATTATGCTAGGAACTTGGAAGAGGAAAT ATGGCATGATCTTGCATATGCATACATAAGTCTGTCACAGTGGCACGATGCAGAGGTGTGTCTTTCAAAATCTAAGGCCT TCAGACAATACACCGCTTCTAGATGTCATGTAATAGGTACAATGCACGAAGCAAAGGGCCTATACAAAGAGGCTGTAAAA GCTTTTCGCGATGCTTTGAACATTGATCCCAGACATGTACCCAGCTTGATATCCACTGCTGTGGCTCTTAGACGGTGGAG TAATCAATCAGATCCTGTTGTCAGAAGCTTTCTGATGGATGCACTACGTTATGACAGATTGAATGCTTCTGCTTGGTATA ATCTCGGCATTCTTCACAAGGCTGAAGGTAGAGTGCTAGAAGCTGTAGAATGTTTTCAGGCAGCAAATTCTCTTGAAGAA ACAGCACCAATTGAACCTTTCAGATGA
Protein sequence (LotjaGi1g1v0706500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSRRLEKMIKCFCSGEQVRREADELVPYSESLATKDYFSSTASGVSGQDGRVERRPDSGNIEEAESSLRESGNLNYEEA RALLGRYEFQEGNIEAALHVFEGIAIVPLAPKIKDFFVKSQDLAKRKGRRRRRSQNYDTLPMAIHTAGLLLEAVFLKAKC LQVLGRFKEAAQTCKVILDIIESSLPYGLPENFGAECKLQETLSKAVELLPELWKLAHCTGEVILSYRRALLHKWNLDAE TVAKIQKEFAVFLLYSGGEEIPTDLRSHMDNSFVPRSNIEEAILLLMILLRRVSLNKIEWDPSILDHLSFALSVSGDLTA LANQWEELLPGTVDRRERYHALALCYYGAGKDMVALNLLRRLLNSRENPSHVPALLMASKICSENPDFAKDGESFSRRAL ENLDGRCDQLENLAKCLLGVSLSTYSRFTVSDSERSERQYEALHSLETASRMTRTSDPLILYYLSLEYADQRKLDAALHY AKRFLNLEAGSNIKGWLLLARILSAQKQFLDAESVVDAALDQIGIWDQGDLLRTKAKLKIAQGQLTSAIETYIQLLSILL VQRKTSGSIQKLYKDYRDYARNLEEEIWHDLAYAYISLSQWHDAEVCLSKSKAFRQYTASRCHVIGTMHEAKGLYKEAVK AFRDALNIDPRHVPSLISTAVALRRWSNQSDPVVRSFLMDALRYDRLNASAWYNLGILHKAEGRVLEAVECFQAANSLEE TAPIEPFR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 135 | 135 | - | – | |
| PANTHER | 5 | 728 | 724 | 0.0 | ||
| PANTHER | 5 | 728 | 724 | 0.0 | – | |
| MobiDBLite | 41 | 70 | 30 | - | – | |
| MobiDBLite | 51 | 65 | 15 | - | – | |
| Gene3D | 51 | 419 | 369 | 4.0E-7 | ||
| Phobius | 136 | 156 | 21 | - | – | |
| SMART | 151 | 184 | 34 | 96.0 | ||
| Phobius | 157 | 728 | 572 | - | – | |
| SUPERFAMILY | 336 | 558 | 223 | 4.93E-8 | ||
| Gene3D | 431 | 559 | 129 | 3.2E-7 | ||
| SMART | 458 | 491 | 34 | 210.0 | ||
| ProSiteProfiles | 458 | 491 | 34 | 5.989 | ||
| SMART | 493 | 526 | 34 | 230.0 | ||
| SUPERFAMILY | 531 | 719 | 189 | 3.8E-16 | ||
| Gene3D | 564 | 724 | 161 | 2.1E-17 | ||
| SMART | 585 | 618 | 34 | 69.0 | ||
| ProSiteProfiles | 585 | 722 | 138 | 15.593 | ||
| SMART | 619 | 652 | 34 | 0.02 | ||
| ProSiteProfiles | 619 | 652 | 34 | 10.06 | ||
| Pfam | 620 | 652 | 33 | 0.0018 | ||
| SMART | 689 | 722 | 34 | 0.056 | ||
| Pfam | 689 | 720 | 32 | 0.0068 | ||
| ProSiteProfiles | 689 | 722 | 34 | 9.588 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0706500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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