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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0706900 |
| Transcript ID | LotjaGi1g1v0706900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phytochelatin synthase; TAIR: AT5G44070.1 phytochelatin synthase 1 (PCS1); Swiss-Prot: sp|Q2TSC7|PCS1_LOTJA Glutathione gamma-glutamylcysteinyltransferase 1; TrEMBL-Plants: tr|I3T4M3|I3T4M3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0706900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:127538183..127541325) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAAGCTTTTACAGGTTGGTTTCATATTTCCAAACGCAATCAGAGCCTGCATTTTGTGGCCTCGCGAGCTTGTCCAT GGTCCTCAATGCTCTTGCCATTGATCCTGGCAGAAAATGGAAAGGTATGCAGTATGCTGCCTTCATACATTTTACGATTG AAATGTTTACAAATCACTGCATTGCTCGCATTTTGCTGTTTCCTTGTGAAGTACAGTTTTCTTATTGATATAGCTTAGTA CAATATATGGTCTGCTGCAAAAATAGCTTAGTACATTGCAAATTTATAAGTACAGTTTAAATGGTTGAACCAAGTGCATG CAGATTTCTGCTTCTGTTGTGAAATTTATTTGGGTTTGGGTGATTTATATACAGGACCTTGGAGATGGTTTGATGAATCT ATGTTGGACTGTTGCGAACCTCTGGACAAGATCAAAGCTAGAGGCATCTCATTTGGAAAGCTTGTATGCTTGGCTCACTG TGCTGGAGCGAAAGTTGAAGCCTTTCATGCAAGCCATAGCAGTATCGATCATTTTCGTAAATATGTCATGAAATGTTCAA CTTCTGATGATTGTCATGTTATCTCATCATACCACAGAGAGGCTCTCAAACAAGTATGCCTTATGGTTTATGTAACTTTG ACATAATAGGAATTGCAATAACTTTCTAGGACTATGAGCTTATTATCCTAGGTCGGAACTAGGTTGTAGGAGCTCTTTTT CTTCGCTCCCATGTATTACGTTTTACCATCATGGCATGCATGCTAATTAGTTTATATAATTCCTCATTGTCGGATCCACT TTTTCCTATAAAATTTATTTTAATAGGCAGTATTGGTGCATGTATATTCATTCTGGCAAAAGTGGTTTGAATGTTTAGTT GAATTTATTTTTGTGACAGACAGGAACTGGTCACTTTTCTCCTATTGGTGGCTATCATGCTGGAAAGGACATGGCACTTA TTTTGGATGTTGCACGTTTCAAGTATCCTCCCCATTGGATCCCACTTACACATCTTTGGGAAGGCATGAATTATGTTGAT GAATCCACTGGAAAAACCAGAGGGTATAGTTTCTTGTTTATGCTAATTTCATTGACCTTATAGTATGATTAATCCAACTG TTAGAATGTTATTGAAGGTTGAGATAAATTTCTTCAAATCTTGTTGCCCTAAGGTCAGCTTCTGACTAAAACAACAACAA AAGCCTTATCCCACTAACTACTAAGTAAGGTCGGTTATATGAATCATTAGACGCCACTGTGCTCGATAAAAAACCAAATT TTGTGGAACATTATTGACCCTAAGGTCACCTCTAATAATATCTTCCAACGTCCTTTTTGACCTCCCTTTGCCCATCTTCA CATGACTAAGAAGTAAGAACCATGTTACCAACCCTTCTCAACAGTGCCTCCAAAGGTCTTGGTACATGCCTGAACCACCT TAATCGATTTTCCATCATCTTCCCCTCAATAGGTGTACATGTCTTAACCACCTTAATCGATTTTCCATTATCTTCCCCTC AATAGGTATCACACCAATATCTCCCCTTATATGATCATTACATATCTTGTCCTTTCTAGTGTGACCACTCATCCATCCAG CTAATGAATAAAATAACTTATTTTTACAAAAGGAATAAAATAAATTTGATGGTTTCTCTTTTTTATGTGCAATTTGGCTT TATCCTCTTCAGGTTCATGCTTATATCAAGGCCTCACAGGGAACCTGGCATGCTTTATACTCTGGTATTTTTCATTCCTT TATGTGAGTCAGAATTTGACACTTAAGCATACTGTAAATGACATTGATGTTTGTGTGGGTTGAATGTGTCACCTACTTCT GCTGATCTTGCAGAGCTGCAAACACGAGAGTTGGAATAGTATTGCCAAATTCCTAATTGATGATATCCCTTTTCTATTAA CATCAGAGGATGTGAAAGACATTTGTAAGGTTCTTTCAGTTATCGTCACGTCGCTGCCATCTAATTTTGAAGAATTCATC AAATGGGTTGCAGAGATCAGGAGAGGAGAGGATGGTTCTCCAAGCTTAAGTGTAGAGGAGAAAGCACGACTTTCTGTCAA GGTCATAAATCTTTCCATCATTGTATAAAATCTAAACCAGTTAGTTCATTTTACTAGTCTCATGTATAAACTGTTTTGTT ATGCAGGAAGAGATATTGAAACAGGTGCAGAGGACAGGACTTTTCAAACATGTAGCCTCGTTTTTGTCACATTCTTGCAG CGGACACACACCAACTTCAGGCGATAGAGACACCTTTCCTGTCATTGCGGCAAGTGTTTGTTGTCAAGGAGCGGAAATTT TAGGTGGGAAAATTAGCTCGTCAGCGGAGTATTGCTGTCGTGAAACATGCATGAAATGCTGGAAAGCGGAAGATGACAAG CCAATAAGAATGGTTTGTGGCACTGTGGTAAATGGCAATACTGAACAAGGGGTTGATGTGCTGATTCCTTCATCATGTGG GAAATTATCTTGCACTTGCTCTAGCACAACCAAGTCCATAAGGAAGCACCCAGCAAGCACTGATGTGTTAACTGTGCTTC TATTGTCCTTACCAACTTCAACCTGGGCCGGTATCGCAGATGAGAAGCTTTTGAGCGAAATTCATGACCTTGTTTCAATT GAAAACCTTCCTGCTTTGCTTCAAGAAGAGGTAGTTATCTTTCATTTGTTGTTTTTAAAATAAAATAATTTTTATTTTCT GCCCCTTTGCCCTGGGATTTCTATAACCTTTTGATGCCTCTGAGCGGTGATAAAATCATATTGAAATCTTGTCCCAAATT GAAAACCTACTGGTTTCCGAACATGTACTTAGTCCATTTTTGGTTGCACTTCCTAAATTCACTTCATCCATAAATTACAA TTTTTATTGCCATAGCTAATTTGGAATGTATGTCCAACACATCCAAACTTGATGTTAGATTCGCGTGTGAGTGTTATAAT GCGTTATAAACTGCTCCGCGAAAAATGCTTTGTTGGTCTTGGCATAGCAGCTCTTATGTTGCTAATTCTACTCCATTATA AAATTTTGCATTTCAGGTTTTGCACTTGAGACGTCAGCTACACATTCTCAAGAGATGTCAAGAGGGAAAGGTAGATGAGG ATCTTGGTGTACCTTTGTCTTAG
CDS sequence (LotjaGi1g1v0706900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAGCTTTTACAGGTTGGTTTCATATTTCCAAACGCAATCAGAGCCTGCATTTTGTGGCCTCGCGAGCTTGTCCAT GGTCCTCAATGCTCTTGCCATTGATCCTGGCAGAAAATGGAAAGGACCTTGGAGATGGTTTGATGAATCTATGTTGGACT GTTGCGAACCTCTGGACAAGATCAAAGCTAGAGGCATCTCATTTGGAAAGCTTGTATGCTTGGCTCACTGTGCTGGAGCG AAAGTTGAAGCCTTTCATGCAAGCCATAGCAGTATCGATCATTTTCGTAAATATGTCATGAAATGTTCAACTTCTGATGA TTGTCATGTTATCTCATCATACCACAGAGAGGCTCTCAAACAAACAGGAACTGGTCACTTTTCTCCTATTGGTGGCTATC ATGCTGGAAAGGACATGGCACTTATTTTGGATGTTGCACGTTTCAAGTATCCTCCCCATTGGATCCCACTTACACATCTT TGGGAAGGCATGAATTATGTTGATGAATCCACTGGAAAAACCAGAGGGTTCATGCTTATATCAAGGCCTCACAGGGAACC TGGCATGCTTTATACTCTGAGCTGCAAACACGAGAGTTGGAATAGTATTGCCAAATTCCTAATTGATGATATCCCTTTTC TATTAACATCAGAGGATGTGAAAGACATTTGTAAGGTTCTTTCAGTTATCGTCACGTCGCTGCCATCTAATTTTGAAGAA TTCATCAAATGGGTTGCAGAGATCAGGAGAGGAGAGGATGGTTCTCCAAGCTTAAGTGTAGAGGAGAAAGCACGACTTTC TGTCAAGGAAGAGATATTGAAACAGGTGCAGAGGACAGGACTTTTCAAACATGTAGCCTCGTTTTTGTCACATTCTTGCA GCGGACACACACCAACTTCAGGCGATAGAGACACCTTTCCTGTCATTGCGGCAAGTGTTTGTTGTCAAGGAGCGGAAATT TTAGGTGGGAAAATTAGCTCGTCAGCGGAGTATTGCTGTCGTGAAACATGCATGAAATGCTGGAAAGCGGAAGATGACAA GCCAATAAGAATGGTTTGTGGCACTGTGGTAAATGGCAATACTGAACAAGGGGTTGATGTGCTGATTCCTTCATCATGTG GGAAATTATCTTGCACTTGCTCTAGCACAACCAAGTCCATAAGGAAGCACCCAGCAAGCACTGATGTGTTAACTGTGCTT CTATTGTCCTTACCAACTTCAACCTGGGCCGGTATCGCAGATGAGAAGCTTTTGAGCGAAATTCATGACCTTGTTTCAAT TGAAAACCTTCCTGCTTTGCTTCAAGAAGAGGTTTTGCACTTGAGACGTCAGCTACACATTCTCAAGAGATGTCAAGAGG GAAAGGTAGATGAGGATCTTGGTGTACCTTTGTCTTAG
Protein sequence (LotjaGi1g1v0706900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESFYRLVSYFQTQSEPAFCGLASLSMVLNALAIDPGRKWKGPWRWFDESMLDCCEPLDKIKARGISFGKLVCLAHCAGA KVEAFHASHSSIDHFRKYVMKCSTSDDCHVISSYHREALKQTGTGHFSPIGGYHAGKDMALILDVARFKYPPHWIPLTHL WEGMNYVDESTGKTRGFMLISRPHREPGMLYTLSCKHESWNSIAKFLIDDIPFLLTSEDVKDICKVLSVIVTSLPSNFEE FIKWVAEIRRGEDGSPSLSVEEKARLSVKEEILKQVQRTGLFKHVASFLSHSCSGHTPTSGDRDTFPVIAASVCCQGAEI LGGKISSSAEYCCRETCMKCWKAEDDKPIRMVCGTVVNGNTEQGVDVLIPSSCGKLSCTCSSTTKSIRKHPASTDVLTVL LLSLPTSTWAGIADEKLLSEIHDLVSIENLPALLQEEVLHLRRQLHILKRCQEGKVDEDLGVPLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 458 | 458 | 2.9E-204 | – | |
| SUPERFAMILY | 1 | 181 | 181 | 1.37E-70 | ||
| Gene3D | 1 | 186 | 186 | 8.0E-76 | ||
| Pfam | 1 | 180 | 180 | 1.2E-78 | ||
| ProSiteProfiles | 1 | 185 | 185 | 43.707 | ||
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 33 | 33 | - | – | |
| PANTHER | 1 | 458 | 458 | 2.9E-204 | ||
| Phobius | 18 | 29 | 12 | - | – | |
| Phobius | 30 | 33 | 4 | - | – | |
| Phobius | 34 | 465 | 432 | - | – | |
| Pfam | 185 | 445 | 261 | 2.5E-115 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Response to metal ion | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus. | ||
| Molecular function | Glutathione gamma-glutamylcysteinyltransferase activity | Catalysis of the reaction: glutathione + Glu(-Cys)(n)-Gly = Gly + Glu(-Cys)(n+1)-Gly. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. | ||
| Biological process | Phytochelatin biosynthetic process | The chemical reactions and pathways resulting in the formation of phytochelatins, any of a group of peptides that bind metals (Cd, Zn, Cu, Pb, Hg) in thiolate coordination complexes. The structure is of the type (gamma-glutamyl-cysteinyl)n-glycine, where n is 2 to 11. |
Expression pattern of LotjaGi1g1v0706900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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