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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0709700 |
| Transcript ID | LotjaGi1g1v0709700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Actin-depolymerizing factor; TAIR: AT2G31200.1 actin depolymerizing factor 6; Swiss-Prot: sp|Q8SAG3|ADF_VITVI Actin-depolymerizing factor; TrEMBL-Plants: tr|I3S1M0|I3S1M0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0709700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:127785503..127788889) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGATTCAATTGCAAATTGAGATAACTTTTACTTCTTTCTCAAAATTATATCTCTTATTTGATAATTTTTATCTCCTT TAATTTATCTTATAGTAATTCCAAATTAAAAAAGAATAACAAAATTAAAAAAAAAAGTAAAAAAAAAATACACAAATACG CGGCGAATAGATATGAAGTGGGGCAGATTGGACGGTGAAGAAAATCATTCTTTTATATATATTCTGCTCCATTCCATGGT CCCTCTCCTCTGTTACTGTTAGCGTTGCCACCACGCACCGCCCTCGTTTCCTTTTCTTTCTACAAAACCACCCTCTTCTC TTCTTCACTCTTCACCTTCCTCCTCTCTTCTTCAACATTCTCCATGTCTTTCAGAGGATTCGGCCGGGTAACATTAACAT TCATTACTGCTTGCTTAGTTTTTTATTTTTATCAAATTGATTATATTTTCTGTTTCTGCCTTCAAAATTTGAAACTTTTC GATACTGGGTATGCTAATCATATCATGTTTAATTCTTTATGACCACTTAGTGTTTGATCATTGTCACTTCTATTTTTCTA ACAAAAAAATTTAATTTTTTTAGCACAAGGTTAGTGATTAAACATGTTAGAGTTGAGATGTTGTTTTTATTTGGGACAAA AAGTAAACTTTGGCTTGTGAATGTTTGTGGGGTTGCATTTAATTTCAAGTGAAAGATTTAATTGAAAAGGCTTTTGATCA TTGTCACTTATATTTTTCTATTCAAAAAAAGTTGAACTTTTAGCACAAGTTGAATTCTTTACAACCTTTGGCTTGTGAAT GTTGGTGGGGTTGCATTTAATTTTCAAGAGAAAGGTTTAGTTGAAAAGGCTTTTGATAATTTTTAGCAAAAGTTGAATTC TTTACATCCTTTGGCTTGTGAATGTTTGTGGGGGTGCATTTAATTTTTCAAGATAAAGGTTTAGTTGAAAAGGCTTTTGA GTTTTGATGCTGATTTGTTTATGATTATATTATTTTTTAGGCGAATGCTTCATCAGGCATGGGTGTTGCTGATCACAGCA AGAACACCTTCATGGAGTTGAAGCAAAAGAAGGTTCATCGGTATGTGATCTTTAAGGTTGATGAGAAGAAAAGGGAGGTT GTGGTTGAGAAGACTGGTGGCCCGGCTGAGAGCTATGACGATTTCGCGGCGTCTTTGCCTGAGAATGATTGTAGATATGC TGTGTTTGACTTTGATTTTGTTACTTCTGAGAATTGTCAAAAGAGCAAAATCTTCTTCATTGCATGGTTAGTTTGTTTGT CCTGCCTTTTATCCCTGTTTAAACCTAGATGATTGTGAGAAGTGACACCTAATATGTGTTATCTTGTGCAACAAAAGAAA ATTTAGCTGGACATGTGATTTATGTTCTTTGAACATATCTTGTGTGATTTCAAAATCACCATGCCAACTAATTCTTTAAA GTGTGTTTTTGATTGAGTGATGGTCATAAAAATCAATGCACTTTGTAGCTGCTTGTAGAATTTATTTTGGATCCTAAATT GGTTTGCAAAAGCTAGACCAAACACACTTTAAGCTTATGTGAATTTGTACTGCTTTAGTGTCATTCTTTGCATGGTCTTT GCTGGTACTGAAGCTATGCGTTTATTGTTTCATTGAATCAGGAAAAATTTCTTGTTTAGATACAATTTTCTTACATGATT GGGCTGTAAATGTAGTCAAATGTAGTATCTTTGATATGTTGCTCCATGCACTGCATCTTGAATTTTACACCATTTCCATC CTGGTTGCTACTGTCAGACATCAAGTTGTTCAGGGGCTCTTTCTGTGTGTAGGATTTAAGTTTCAGATAGAGCATTACTG GCTAGAAGTTCTTAAATATATATATGCAAATCAAAATAATGTGACATAAACATCTATATGCTTCAGCTTAACCCATATAA GAGTAAGTTTCATTCTTTTTTTTTGTTTGGTGGGGAGGTAGTTTGTCTAGTTCTAATTTGCAAATCTAGAATTGATGTGT AGAGAATTTAGGTGTTCTCAAATGTTTCTATTCCATTCTTATTTATAAATTTGAAAGTTTGATGAGATAAAGCTTGGAGG GCTTTGCTATTATGTAGTATTTCAGAATGTCTCTTATTATCTTCTGGAGACAGGAGCAGATAATATAATGTCCTCAATTA GGATGATTGGTTCTTGAAGGAATTGGTACTATGGTACACGATTCCATCAATCCATTGTACAAGTTTACTATATCGGCGTG AATTGCATTTGCATGTCAAGCCTTCACATACCTTGCTTCTGAATAAAATCAGTATAAATATAAGTTTAGGTAAGAAAACT TATTGGTTTTTAATAGTTGGATGGGTTAGGTACTCCTGCATTTTTTGAGCTGATTGTCCATAGAATAGAAAGACTACTCT GATAAATTCATCCGTTTCTTGTTTGAGTGGCATCTTGATTTCCAGTTCCTAACAAATTTTCCTTCATTTCAAGTATCACC TAAATCTCTTACTTGGGTTTGACTACTGCATGTTCTTCTAATGAGAACTAACTTGGGGTGAACTTTTGTCATTTTACCAG TTTGATATATGATTATGCCTCTGAGATATCATTCTTAGTTTTTCATTGCTGATATTGATTAGGTCTCCTTCAACATCTCG AATCCGAGCCAAGATGCTCTATGCCACTACTAAAGAAAGGTTCAGACGTGAGCTAGATGGTGTTCATTATGAAATCCAGG CTACTGACCCCACAGAAATGGATCTTGAAGTGATCAAAGACCGAGCACATTGAAATGTTTATGCAGTTATTAGCTTCTTT TTTTGTTGTCAAAATCTACTAGTATATAGGTTTAATGAATCACCTCTCCATGCTCTATCATCTGCAAAGCCGATCTTGTC ACCGAAATATAACTCCAATAATTTGAATCTGAAGGCTTGTGGGTTTAAGCTCTTGGCAGCTACTGTCTTAATTTCCAATT TGCTTTGACTGTATTGTATGAGCATGACCTTATGGACCCATATATCTTAGATATTAAAACCCCTTGCCATAACTTTAACA GGGTAACTGCATAATTTTATCTTTATTTGCTTTGAAAGCTAATTTATCATGAGCAGTTCAGTGAGGCAAAAGAACTGACA GAGATCAGCAACCAAGTAATGAATGTTGAGCCAATTAGAACAGACACAACAGTAAAGCAACAATCATTTGACAATAATCT CAATGGTTAATTTTTCAATGATTATCCTTAGACTTTGTGGTGTAGAGTGCAGTCCTTCACTTTAGATGAGAGAAATCTTG AACCTGTAACTTGTGAAATGTCAAATGATGACTTTATTTATCTTACTTAAATAATGGGGAACCACATGAAGTAAAGAGGT AAAGAACATAGTTCTCTGAATAATTTA
CDS sequence (LotjaGi1g1v0709700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTTCAGAGGATTCGGCCGGGCGAATGCTTCATCAGGCATGGGTGTTGCTGATCACAGCAAGAACACCTTCATGGA GTTGAAGCAAAAGAAGGTTCATCGGTATGTGATCTTTAAGGTTGATGAGAAGAAAAGGGAGGTTGTGGTTGAGAAGACTG GTGGCCCGGCTGAGAGCTATGACGATTTCGCGGCGTCTTTGCCTGAGAATGATTGTAGATATGCTGTGTTTGACTTTGAT TTTGTTACTTCTGAGAATTGTCAAAAGAGCAAAATCTTCTTCATTGCATGGTCTCCTTCAACATCTCGAATCCGAGCCAA GATGCTCTATGCCACTACTAAAGAAAGGTTCAGACGTGAGCTAGATGGTGTTCATTATGAAATCCAGGCTACTGACCCCA CAGAAATGGATCTTGAAGTGATCAAAGACCGAGCACATTGA
Protein sequence (LotjaGi1g1v0709700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFRGFGRANASSGMGVADHSKNTFMELKQKKVHRYVIFKVDEKKREVVVEKTGGPAESYDDFAASLPENDCRYAVFDFD FVTSENCQKSKIFFIAWSPSTSRIRAKMLYATTKERFRRELDGVHYEIQATDPTEMDLEVIKDRAH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 145 | 139 | 6.3E-92 | – | |
| PANTHER | 7 | 145 | 139 | 6.3E-92 | ||
| Gene3D | 8 | 146 | 139 | 1.3E-50 | ||
| SUPERFAMILY | 10 | 146 | 137 | 8.03E-47 | – | |
| CDD | 13 | 145 | 133 | 3.12446E-65 | ||
| ProSiteProfiles | 14 | 146 | 133 | 39.904 | ||
| SMART | 19 | 146 | 128 | 1.0E-58 | ||
| Pfam | 22 | 143 | 122 | 2.0E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Actin binding | Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments. | ||
| Cellular component | Actin cytoskeleton | The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes. | ||
| Biological process | Actin filament depolymerization | Disassembly of actin filaments by the removal of actin monomers from a filament. |
Expression pattern of LotjaGi1g1v0709700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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