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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0715500 |
| Transcript ID | LotjaGi1g1v0715500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane emp24 domain-containing protein; TAIR: AT3G22845.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q9LIL4|P24B3_ARATH Transmembrane emp24 domain-containing protein p24beta3; TrEMBL-Plants: tr|A0A072U3W0|A0A072U3W0_MEDTR Emp24/gp25L/p24 family/GOLD protein; Found in the gene: LotjaGi1g1v0715500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:128378073..128380194) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCACAATACTTTTTTTTTGTGTATATAGAGATTGTATGAGTAGAGCGACTTTATAGATGGAAGCAACGACCAGTTAA ACCACTTAGCCAGATTTAAAGCCGTTAAAAGTTGACAGTTGACACTTGTGTGATGAAAAATTCCTGGCACATTCACAAGA TCTCCAGATCCAAGTTGGTCTAGGTGAATCAAGCTAGCACTAATTAACCAAGTCTTAATTAAATGGATTGGTTTTCTAAG ATTTGCACTCTTGTAATCTTCTTCCTTGGTACCCTTATCTATAATGTGTTCTCTCTCTCAATCAGTTTAAACGATGTCGA ATGCGTGTCGGAGCACGCTCAATCCGGGGACTCTGTGACTGGGAACTTCGTTGTCATGGACCATGACATTTTTTGGAGCT CAGACCATCCTGGAATTGATTTCACCGTAATTAATTTACCTCTCAAATTAAATGTTCGTTCCCAACTTGAACAGAATTAA TGTATTTATGGTATGTAGGTGACAAACCCAGGAGGGAATGCGGTACACTCATTGAAGGGAACTTCAGGGGACAAGTTTGA GTTCAAAGCGCCACAAAATGGAATTTACAAGTTCTGCTTTCACAATCCTATGTCTACCCCGGAGACTGTCTCTTTCTACA TTCATGTTGGTCACATCCCAAGCGAGCATGACTTAGCTAAAGATGGTAATTAGTTCCATATTGTTGTCTCATACTTAACA TTTTATGCATATGATTGGTTTTCATTTTACTCATTCTTGCTTTTGGATTCAGAGCATTTGGACCCAATAAACGTGAAGAT TGCGGAGTTGAGAGAAGCATTGGAGTCTATCATAACAGAGCAAAAGTACTTGAAAGCACGTGATAATAGACATCGATATA GTAAGTTGTTCTCATCAAAACCCTCACTAAATAGCACAATACTTACATTTATATATACCAGGGATCGCAAGAGATATTTC TTTCTTATAATGACGAACTTGTCAGCACTCTGAACCTACTTGAATAACATAACATATATACATATACATTCTGAACCTAC TTGAGTAACATTCCTTTTCCTAAGATTTTACTTTGTATGAATATGATCCAGAGTTGTTTTTCAAACACAAGCCAATACAT TTGAGGGTGTGGTGATCTTCCATTGATGTCCACATGGAAATTATGCCTCTGCTAGACCATGTAGGCATGCAGTTTTAACT AAGAGTTCACCATCTTCCAAAGCCATCAGTGTCCACTTATCATCTGCCCTTTGATTCAATTGGATTGACCCCTCGATAAC CCTGCAATTTGGCTCTTAAAAGGTTTACCTTAAACCCGGAAATCATTTCAAAACGCTTCAACATACTCTTCATGACCAAC ACATTTTTGAGACATGCTTCCCCAATGAATTAATGTATATATACCTCCACTCCCTCGCCACCAACCTTGAATCCCTTGAA AATGTTCATGCAAACAGTTTGTCTTATCATTCTACTTAAATCCTCTGCCACTATCAAGAACAAAGTTATGAAATTTCTTA CCCATTTATTTTAAATTTTATGTCATGAATTATTTAGACAACTCTTATAACAAATGTTTCAAAATGACTTTAATTAAATA GCAAGGTCCATTTCATGTGTATTAATTTATCAACTCATCCAATCATAGTGGATTGTGAAAATTGCTCTTATTTCATTTGA TGGACATTTTTTTTTCAATTGCAGCAAATGAGAGCACAAAAACACGTGTTATCTTCTACACAGTGTTGGAGTATATTTTA TTAGCTGTTACAAGCATATTACAAGTAGTATACATTCGTCGCCTCTTCAGCAAATCGTTTGCCTACAACCGAGTGTAGGC TTCCTAATGTTTCATAGTAGTTCTCATTTCATTATTGTTGTGCTTCTCATTCATCTCACTTATTTTTGTAACTTCTCTGT GATGAATTTCTCCATTTGAGTTTTTTTTTTCTTTAATATTTTAGTTTATGCCTACTTATTACACCAGTGTAATACTTTAG TAATCTTACATCATTTAATAACTTTTTACCATATAATATATCTATATCTATATAGTATATGTAAGGCACACTTATAAATT TTTAGCATTAAATGTGTATATGTACAAGAGACTTCATCATTA
CDS sequence (LotjaGi1g1v0715500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTGGTTTTCTAAGATTTGCACTCTTGTAATCTTCTTCCTTGGTACCCTTATCTATAATGTGTTCTCTCTCTCAAT CAGTTTAAACGATGTCGAATGCGTGTCGGAGCACGCTCAATCCGGGGACTCTGTGACTGGGAACTTCGTTGTCATGGACC ATGACATTTTTTGGAGCTCAGACCATCCTGGAATTGATTTCACCGTGACAAACCCAGGAGGGAATGCGGTACACTCATTG AAGGGAACTTCAGGGGACAAGTTTGAGTTCAAAGCGCCACAAAATGGAATTTACAAGTTCTGCTTTCACAATCCTATGTC TACCCCGGAGACTGTCTCTTTCTACATTCATGTTGGTCACATCCCAAGCGAGCATGACTTAGCTAAAGATGAGCATTTGG ACCCAATAAACGTGAAGATTGCGGAGTTGAGAGAAGCATTGGAGTCTATCATAACAGAGCAAAAGTACTTGAAAGCACGT GATAATAGACATCGATATACAAATGAGAGCACAAAAACACGTGTTATCTTCTACACAGTGTTGGAGTATATTTTATTAGC TGTTACAAGCATATTACAAGTAGTATACATTCGTCGCCTCTTCAGCAAATCGTTTGCCTACAACCGAGTGTAG
Protein sequence (LotjaGi1g1v0715500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDWFSKICTLVIFFLGTLIYNVFSLSISLNDVECVSEHAQSGDSVTGNFVVMDHDIFWSSDHPGIDFTVTNPGGNAVHSL KGTSGDKFEFKAPQNGIYKFCFHNPMSTPETVSFYIHVGHIPSEHDLAKDEHLDPINVKIAELREALESIITEQKYLKAR DNRHRYTNESTKTRVIFYTVLEYILLAVTSILQVVYIRRLFSKSFAYNRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| PANTHER | 3 | 208 | 206 | 1.0E-118 | ||
| PANTHER | 3 | 208 | 206 | 1.0E-118 | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| TMHMM | 10 | 29 | 20 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| SMART | 24 | 202 | 179 | 1.5E-55 | ||
| Phobius | 25 | 174 | 150 | - | – | |
| Pfam | 27 | 201 | 175 | 9.6E-46 | ||
| ProSiteProfiles | 32 | 118 | 87 | 15.321 | ||
| SUPERFAMILY | 33 | 125 | 93 | 4.45E-10 | ||
| Phobius | 175 | 197 | 23 | - | – | |
| TMHMM | 175 | 197 | 23 | - | – | |
| Phobius | 198 | 210 | 13 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0715500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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