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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0718000 |
| Transcript ID | LotjaGi1g1v0718000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase, putative; TAIR: AT1G26370.1 RNA helicase family protein; Swiss-Prot: sp|F4IE66|PRP22_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10; TrEMBL-Plants: tr|K7K7U5|K7K7U5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0718000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:128633815..128640695) extracted from Lotus japonicus Gifu genome v1.2.
ATACAATTTCCCCACCACAAGAAACAACAGACACCAGCACCCTCATAAGTCGTAACGTATCAAACACCATCACACAGGCC CCAATCAAACCCTGCTTGAATCCTCCACCAAACCTTAAGGTGACTCAGAAGGCAAACATTCAAAGAGTGAAGATACAAAC CCAGAGTGTTCTAAATAGTCCAGAGATACTAGCAACCCATATTACCTTAAAAAGGTCATTCCGTCGGTTTAACTGGATTT TGACCGCTTTTTAATCAAACCGGTTTATCTGGTTCGGCCACCATAACGGTGTGTGAAACTACGAAAATAACCCTCAATAT ATAACTAGGCAAAGTCTCAAACACTTGGATGCAACCTACAATCTGCCTCCACCGTCGCGCTGTTTCCTTCTTCGCCTGGT TGTAGCGCCACCGTCTTCCGCCGCCTCCGTTCTAACAACACTTGTGCAAATTCACTGAAATAAGCTGCTCTTTTCGAATA GGCGGCATCAAATGCCTTCTGTGGCTCCCGGAAATCACAATCACCCTACTGCTGCTACTGCCAATGGCAAGTTCTCCAAT GCAAATCGGAATCGCCAAACCCAGCTCACTCCCGGGTATAAACCCTACCCTAATCCTAATTCATCTATATAGTTTCATTC TCTCTTTCAAATCAATTTGATGTTTGTTTCATGGTATTTGCAATTTGTTATTGTATATGCAGGAGACAAAAGCTTGCACA ACAGAGGAAGTCTCTTCCCATTGCTTCAGGTATTGCCTTAGAAGAGCTTGAAATTTTGGTAACTTTCACTTTCTTACTTT CAGCCTGTGGTGTAATCATTCACAGTATGGTTATTGTTTGTATTGTCTGTATTGTATTGTAGTTGAGAAGAGGCTTGTTG AAGAGGTTCGAAAGCATGATATTTTGATTATTGTCGGCGAAACTGGAAGTGGGAAAACCACACGTAGGTTACATTTTATC CTAGATTGTGATTATGATTATATCCTTATTCCTTCATAATTTAGATTTTTCACCATGTTGTGTCTATTGCATTGTGCTGT GTAGAGATTCCGCAGTTTCTATTTGATGCTGGACTTTGCCATGATGGGAAAGTTATTGGGATAACTCAACCCAGACGTGT GGCTGCTGTTACTGTGGCCAAACGTGTTGCCGAGGAATGTGGTGTTGAGCTGGGCCATAAGGTTGGGTATTCTGTTAGAT TTGACGATGCTACTTCCAGCTCGACAAGGATCAAATATATGACAGATGGCTTGCTTCTGAGGTAAAACTTTTATGTAACT TGGATCACTTGATTTCTTTACTGGGGGTGTTGCCTATTAAGACATGATGGTATTCCCTTTTTTTAGACCACCTGGCACCT GTCTTTTTGACGTGAATTAAGATGCTTGTTGATTTCAAGAAACTAAGGAGGTTTCAAATTTAAATTACTTTTTCTATGGT TTTGTAGATACAGTTTTTATGTAGGAGAGTTGATATAAATTTCATTGTGCTTACAGAGAAGCATTGCTGGATCCGTATCT TTCTAAGTATTCTGTCATAATCGTCGATGAAGCTCATGAGAGAACTGTCCATACTGATGTGTTGTTGGGCTTGTTGAAAA ATGTACAACTTACTCGGTCAAGGTCTATCAGTGATGGTCAGGGCCTTAATTTTGGGAACAAACATGTAAATAATGTCTTG TTGTCAGACAAAGAGAATGGTCAGAGTAGCAGTTCTCTTAGAAAGGACCACCACAAGAAGATTTCTCCACTGAAGTTAAT CATCATGTCTGCAAGTCTGGATGCTCGTGCTTTCTGTGAGTACTTTGGTGGTGCCAAAGCTGTTCACATTGAAGGGAGAC AGTTTCCTGTGGATATATTTTATACTCGTCGTGCAGAGACTGATTATTTAGATGCTGCCTTGATAACTATATTCCAGGTC ATTGGTTTATTCTGACCGTATAATTTCATTCTGTGTATGCGTTTATGGTATTTGCAGTTTCACATGTCATTCATTATCCT GTTCTTTTCATTCACGTTTGTGCATTGCATGGTTATTCACGCATATTGCTGCTTTTATGTATTATATAAATTTATAATAT TGCGGTGTTGACTGAGAAATAAAGTTCATATCTTTGATGTAATAGATCCATTTAGCGGAGGGTCCTGGTGATATATTAGT ATTTCTTACTGGGCAAGAGGAGATTGAATCTGTTGAAGGACAGATCAAGGAGAAACTCACACAATTACCTCAAGAAAGTC AAAAGCTTCTAGTTGCGCCTATATTTGCAGCTCTTCCATCTGAGCAGCAACTGCGAGTCTTTGCACCACCTCCATCTGGG TGTCGCAAGGTATCCTAGCCATACATTTGTTCTTTCTTTTTAATAAGTGTATTAATTAATTGTGGATAGAATTAACTAAA AAAACAGGGGAGCGAATCTTTCTTTTTAAACAGTTGACATGTTTTATCTAGGTTTTCATTAATTCTCTTGAAGCACTCTA TTTCTCAATCACAATAATTGCAAGTAATGCTGGTTGCCTTATTTAGAGTCTCATTAGGTTTAGGAGTTAGGATTCATATT GCTTTTTTTTTTTTGCATATTTCTGTACTGGAATTTCTCTTGGGCACACATGACTTGTATAATGATCATCTTCCCCTTTC ATCCATTTTTCATGATTGGTAACACACGGTTTACCTCTGACCAATTTCATGCTGACAATATTCTGCACTATGAATGTGAT CCAGCTCTTTTGATGTCAGTGTAAGAACTACTTGTACCATTTTTCCTAGTTGTCACACTCACCCAAATGCTTCTACCAAT ATTTCTGTATACTAACTGACAATCTGGTGATCCTTAACCCAACATCATATAATATGATGTCATTAAGAGTCTACAACTGA TTCCATCTTTTCCATCACTTTACTAATGGATTATTGCACTCAACTGACACCACTCCTTTAGGAACTATGTCATCTGAATT GGCTACAATCCCTATAAATAGTACTTGAATGCACGAAATAGTTTCTGTCAGGACCATATAATTTTTTACTGCGCATCACT TATTTAATGTAAGCTTATGTATATTTAAAATAACATGAGATTTTTACCATATCAGGACTCAGGTAATCACTAATCACTTG TTTCTAATTGTATTCAACTTAGCTCTCTTCAAGCAAAAAAACTTAGTTCTCTGTTGTTTTCGTAGGTGATATTGGCGACT AATATTGCTGAGACATCAGTAACAATTCCTGGAATCAAATATGTAATTGATCCAGGATTAGTTAAAGCACGTTCCTATGA CCCTGGAAAAGGTATGGAATCCTTGATTATAGTTCCTACGTCCAAGTCTCAAGCTATGCAAAGAAGGTATGGTGCTGGAT TAAATTTGAATCTATGAAATGTTTGATTATTGCTGCAAATATTGGCTGTGTTGATTGAGTTATTGTGGTGAAAATAAGCT TGTCCCAGTTTGATGATGTCTTCCTTTCTTTATTTCCAAGTTCAGTTTTTGTAATGCACGCCTTTGGTTTTCCTTAAAAA CATGGTATTTACTTAAAAACTTGAGATGTGAATCTTTCATCAAAGTTTCTATTTCATATTTAGAATGATTGAGGATGCAT GTCCTATTTTTAATATTTCATTTGTAGGTGATTGAGAAGGTTACAGATCATGTAATGTATATTATCAAAATATAAAAAAT AAACATTGTAATGTAAAGCATCATTTCTTTTTCATGAAATATTTTCTTAACTATTTACTTTATATAATAGCTCATTCTTT GATTCTGGTTTGTGCTTTTTAAATCTTATTTTGGTTATAATGATTGATATGTTGTATAGGTAGTCAATTTTAGCCGAATT ATCTTAGTGAAACCAATACATTTAAAATAATTTTTCTGGAAGAGTAGCAGAAATTGATTATCTACTTTTTGGTAACAGTG GGCGTGCAGGGCGTGAAGGACCTGGAAAATGCTTCCGTCTATATCCAGAAATTGAATTCGAGAAACTTGAGGATTCAACA ATGCCAGAGATTAAGCGCTGCAACCTTTCTAATGTCATTTTGCAGCTTAAGGCTTTGGGCGTTGATGACATATTAGGGTT TGATTTCATTGAGAAACCTTCAAGGTAAAAACTTTTTCAGAATTTTGGTTTTACAGTTTTCTTACACTTGCATATTCGTG GATATTTATGCTCTTCATATTCGTGGACATTGTGAAACTGAAGGAAGCAAGACGATGGGAAGATGATGAATAACTAATAA GTTTGTTGGATGTACATGATAAAATACAATGAATTTGGATGACTCACCATATCATAGTATGGAATTATAACGAGTAAATA ATCAGGCATTTCCTTTATGCTTTGGTGCCTGTATGACTAAATTAACTCTGCTTGAACTATTTAAATTTGGTACATTTGCT ATTATATTGCATTTTCTAAAGCAGGTCCTTTTATCTTGAGGAATTAAACTGCTTTTATGTCAAACCTTACCAACTAAGCA GTTAGCAACCTTTCAAAGAATACCAATGTTAATAAACAGCTCTGTTTAGGTAGATGTAATAAGAGGCACATAAAGAGTTT AGAAATCTATTCCTTTGCATCAGTCAGTAGTGACGTGAGTTAAAATATTTGAAATTTTTATTGATATGTTGTCGTGTGTA TTGTACTCTGAAACTAATTTAATTTTTTTAGGGATCTTTATTTGTTAGTTTACTCTTTAAAAGTATTTTACCAGGCAACA AATTACTCAAAGACTGTGCATGTTTCAACAGGGCAGCTATTATAAAATCATTGGAGCAGCTATTTTTATTAGGTGCTCTA ACAGATGAGTGCCATCTATCTGATCCAGTTGGGCGTCAAATGGCTCGACTGCCTTTGGATCCTGTTTATGCCAAAGCTCT TATTTTAGCTAGTCAGTTTAACTGCTTGGAAGAGATGTTGATAACTGTTGCAATGCTTTCTGTGGAATCCATATTCTATG CTCCTCGTGACAAGTTAGAAGAGGTTTGAGGAGTGAATTCTCATTGTAGTACATTCTTGTCATATTACCTTTTGATGTTA TGATGTAACATGAATACGAAGATGAATCATTGATTATGTACTACACTAGTTCATCACTCTATTTGACCATTTAACAATTT TTTTGTAAATATCATATAAATGGTTCAAATATTTGCAATTCGTAATGACTGGCTGAAGATTATATAGTCTTTCATGTTTA CATATACATCACCCTTTCTCCCTTCTATGTACTCATTTATTGTGTTTGTCCCATTTTTCACCAGTCGAGAATTGCAACGA AATGCTTCTCAAGTCCAGAGGGAGACCACATCACTTTGATTAATGTGTATCGAGCATCTAATGATTTCTTGGAGAAGAGA TCAATGGAAATGAGTAAACCAAAAAGTGAAAAGGTTTTGAGAAAATGGTGCAAGGAAAATTTTATTAATAGCCGTTCTCT TAGACATGCTTGTGACATTCACAGGTAAGTTGTATTGTGTTATAAGTATATTTCAAGGCATCTATAACATAGATATTTAT GCATTCATTTGTAAAACACTTTTTGCAGGCAGATTAAGGGACATGTTCAACAGATGGGTCTGAATCTTGCTTCCTGTGGA GATGATATGCTTCAATTCCGCAGATGCCTTGTTGCTTCCTTTTTCCTCAATGCAGCTATAAAGCAGCCTGATGGAACCTA CAGGTATCTAATTCAATTTAAAAATTATTGGCAAAACCCATCTGGGTAGCTTCCCATCTATTCCCTTTGTGATAATCAAA CCAGTGTTATCAAATATCTGGCATGGCGGGCGGAATCTCATGACAGGTTTTTGGCTCTCCGCCATGGCCGATAATTCGCC ATAATCCACCATCTGTCATCATTATTTGTTAAATATGGCTGATTTTTGGCTTTTCGCCAGTCTGCCATCCGCCATTAACA ACCTTGAATCAAACTGTTTGCGAAAGTATCTGTTAGTTCTAAAATTCTCATCTGGATTATGACTCACTAATTGGAATTCG TACCAGCATATATAATTTTATCATATATTTGCTTTTAAAGACTCCCTCATTGCTTTAATCACATGCAGGGCTTTGGCCAG TGGTCAGGTGGTGCAGATCCACCCTTCTTCTGTATTATTTCGGCAAAAACCAGAGTGTGTAATATTTAACGAACTTCTCC AAACTAATAACAAGTATGTCCGGAATTTAACTAGAGTTGACTACCTATGGTTAACTGAACTTGCTCCTCAGTACTATGCC ATGCAGAACTAAATCCGTGATGGTGCTACTAAATAGGTAATGTGATATCTTTTCTTCTTTGTGCTCGATTCTGTTGGGTT TATTCATGGTCTTATGTAATCCGTTTATTACTGTCTTCATTATTAACCTGATTGGTGTGAGGATTCATCTTACATTGGAC ACTGTCTTTCCTCTCTTATTTGTATCACATGTTTTTCAATATTTTTGCAGGCTACGACGAATCACTTGTAGTTAACAACA CTCAAAGAAAAATGATGGGAGAAAGGGGATGCAGACCCACATGTATTGTCATTTATTGTCAATTACATTGATGCTTATCT ATTTTTACGTGGTATCAGGCCTGAGTTGTTGACGAAAATCTAGCTTGTAAATAAGAAGTTTCTCATTCTTAATTTCTTAT ACTTAATTGAGAGTACTCATTCAGTATCTTATTATTCTGTTATTTACTGACTGGAAGAATGAAAATATACCTTTATGCTC TGTCTCACCCTACGTTTTCTACTTGGCCATATCTTACACTAATAATTGTATGCTAGGTAATTTTTGTAGAATCAAGCTCA ATCATAGATTTGAAGAAACTTGTTGATATATGAGTCTAAATAAGATCAGGTTAAAGTGGGACAGGATCAGGTTAACTCAA A
CDS sequence (LotjaGi1g1v0718000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTTCTGTGGCTCCCGGAAATCACAATCACCCTACTGCTGCTACTGCCAATGGCAAGTTCTCCAATGCAAATCGGAA TCGCCAAACCCAGCTCACTCCCGGGAGACAAAAGCTTGCACAACAGAGGAAGTCTCTTCCCATTGCTTCAGTTGAGAAGA GGCTTGTTGAAGAGGTTCGAAAGCATGATATTTTGATTATTGTCGGCGAAACTGGAAGTGGGAAAACCACACAGATTCCG CAGTTTCTATTTGATGCTGGACTTTGCCATGATGGGAAAGTTATTGGGATAACTCAACCCAGACGTGTGGCTGCTGTTAC TGTGGCCAAACGTGTTGCCGAGGAATGTGGTGTTGAGCTGGGCCATAAGGTTGGGTATTCTGTTAGATTTGACGATGCTA CTTCCAGCTCGACAAGGATCAAATATATGACAGATGGCTTGCTTCTGAGAGAAGCATTGCTGGATCCGTATCTTTCTAAG TATTCTGTCATAATCGTCGATGAAGCTCATGAGAGAACTGTCCATACTGATGTGTTGTTGGGCTTGTTGAAAAATGTACA ACTTACTCGGTCAAGGTCTATCAGTGATGGTCAGGGCCTTAATTTTGGGAACAAACATGTAAATAATGTCTTGTTGTCAG ACAAAGAGAATGGTCAGAGTAGCAGTTCTCTTAGAAAGGACCACCACAAGAAGATTTCTCCACTGAAGTTAATCATCATG TCTGCAAGTCTGGATGCTCGTGCTTTCTGTGAGTACTTTGGTGGTGCCAAAGCTGTTCACATTGAAGGGAGACAGTTTCC TGTGGATATATTTTATACTCGTCGTGCAGAGACTGATTATTTAGATGCTGCCTTGATAACTATATTCCAGATCCATTTAG CGGAGGGTCCTGGTGATATATTAGTATTTCTTACTGGGCAAGAGGAGATTGAATCTGTTGAAGGACAGATCAAGGAGAAA CTCACACAATTACCTCAAGAAAGTCAAAAGCTTCTAGTTGCGCCTATATTTGCAGCTCTTCCATCTGAGCAGCAACTGCG AGTCTTTGCACCACCTCCATCTGGGTGTCGCAAGGTGATATTGGCGACTAATATTGCTGAGACATCAGTAACAATTCCTG GAATCAAATATGTAATTGATCCAGGATTAGTTAAAGCACGTTCCTATGACCCTGGAAAAGGTATGGAATCCTTGATTATA GTTCCTACGTCCAAGTCTCAAGCTATGCAAAGAAGTGGGCGTGCAGGGCGTGAAGGACCTGGAAAATGCTTCCGTCTATA TCCAGAAATTGAATTCGAGAAACTTGAGGATTCAACAATGCCAGAGATTAAGCGCTGCAACCTTTCTAATGTCATTTTGC AGCTTAAGGCTTTGGGCGTTGATGACATATTAGGGTTTGATTTCATTGAGAAACCTTCAAGGGCAGCTATTATAAAATCA TTGGAGCAGCTATTTTTATTAGGTGCTCTAACAGATGAGTGCCATCTATCTGATCCAGTTGGGCGTCAAATGGCTCGACT GCCTTTGGATCCTGTTTATGCCAAAGCTCTTATTTTAGCTAGTCAGTTTAACTGCTTGGAAGAGATGTTGATAACTGTTG CAATGCTTTCTGTGGAATCCATATTCTATGCTCCTCGTGACAAGTTAGAAGAGTCGAGAATTGCAACGAAATGCTTCTCA AGTCCAGAGGGAGACCACATCACTTTGATTAATGTGTATCGAGCATCTAATGATTTCTTGGAGAAGAGATCAATGGAAAT GAGTAAACCAAAAAGTGAAAAGGTTTTGAGAAAATGGTGCAAGGAAAATTTTATTAATAGCCGTTCTCTTAGACATGCTT GTGACATTCACAGGCAGATTAAGGGACATGTTCAACAGATGGGTCTGAATCTTGCTTCCTGTGGAGATGATATGCTTCAA TTCCGCAGATGCCTTGTTGCTTCCTTTTTCCTCAATGCAGCTATAAAGCAGCCTGATGGAACCTACAGGGCTTTGGCCAG TGGTCAGGTGGTGCAGATCCACCCTTCTTCTGTATTATTTCGGCAAAAACCAGAGTGTGTAATATTTAACGAACTTCTCC AAACTAATAACAAGTATGTCCGGAATTTAACTAGAGTTGACTACCTATGGTTAACTGAACTTGCTCCTCAGTACTATGCC ATGCAGAACTAA
Protein sequence (LotjaGi1g1v0718000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSVAPGNHNHPTAATANGKFSNANRNRQTQLTPGRQKLAQQRKSLPIASVEKRLVEEVRKHDILIIVGETGSGKTTQIP QFLFDAGLCHDGKVIGITQPRRVAAVTVAKRVAEECGVELGHKVGYSVRFDDATSSSTRIKYMTDGLLLREALLDPYLSK YSVIIVDEAHERTVHTDVLLGLLKNVQLTRSRSISDGQGLNFGNKHVNNVLLSDKENGQSSSSLRKDHHKKISPLKLIIM SASLDARAFCEYFGGAKAVHIEGRQFPVDIFYTRRAETDYLDAALITIFQIHLAEGPGDILVFLTGQEEIESVEGQIKEK LTQLPQESQKLLVAPIFAALPSEQQLRVFAPPPSGCRKVILATNIAETSVTIPGIKYVIDPGLVKARSYDPGKGMESLII VPTSKSQAMQRSGRAGREGPGKCFRLYPEIEFEKLEDSTMPEIKRCNLSNVILQLKALGVDDILGFDFIEKPSRAAIIKS LEQLFLLGALTDECHLSDPVGRQMARLPLDPVYAKALILASQFNCLEEMLITVAMLSVESIFYAPRDKLEESRIATKCFS SPEGDHITLINVYRASNDFLEKRSMEMSKPKSEKVLRKWCKENFINSRSLRHACDIHRQIKGHVQQMGLNLASCGDDMLQ FRRCLVASFFLNAAIKQPDGTYRALASGQVVQIHPSSVLFRQKPECVIFNELLQTNNKYVRNLTRVDYLWLTELAPQYYA MQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 44 | 44 | - | – | |
| MobiDBLite | 9 | 44 | 36 | - | – | |
| PANTHER | 31 | 190 | 160 | 4.2E-242 | – | |
| PANTHER | 31 | 190 | 160 | 4.2E-242 | – | |
| SUPERFAMILY | 42 | 609 | 568 | 1.16E-108 | ||
| SMART | 44 | 271 | 228 | 4.1E-26 | ||
| CDD | 46 | 261 | 216 | 2.44696E-106 | – | |
| ProSiteProfiles | 56 | 262 | 207 | 18.758 | ||
| ProSitePatterns | 162 | 171 | 10 | - | ||
| PANTHER | 225 | 722 | 498 | 4.2E-242 | – | |
| PANTHER | 225 | 722 | 498 | 4.2E-242 | – | |
| Gene3D | 265 | 438 | 174 | 1.3E-68 | – | |
| CDD | 266 | 427 | 162 | 5.00605E-80 | – | |
| ProSiteProfiles | 280 | 459 | 180 | 16.464 | ||
| Pfam | 289 | 418 | 130 | 2.3E-14 | ||
| SMART | 311 | 419 | 109 | 3.7E-18 | ||
| Gene3D | 464 | 558 | 95 | 6.2E-23 | – | |
| SMART | 479 | 570 | 92 | 2.8E-25 | ||
| Pfam | 480 | 604 | 125 | 8.7E-20 | ||
| Pfam | 642 | 718 | 77 | 6.4E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. |
Expression pattern of LotjaGi1g1v0718000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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