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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0718000 |
| Transcript ID | LotjaGi1g1v0718000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase, putative; TAIR: AT1G26370.1 RNA helicase family protein; Swiss-Prot: sp|F4IE66|PRP22_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10; TrEMBL-Plants: tr|K7K7U5|K7K7U5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0718000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:128634378..128640066) extracted from Lotus japonicus Gifu genome v1.2.
AATCGGAATCGCCAAACCCAGCTCACTCCCGGGTATAAACCCTACCCTAATCCTAATTCATCTATATAGTTTCATTCTCT CTTTCAAATCAATTTGATGTTTGTTTCATGGTATTTGCAATTTGTTATTGTATATGCAGGAGACAAAAGCTTGCACAACA GAGGAAGTCTCTTCCCATTGCTTCAGGTATTGCCTTAGAAGAGCTTGAAATTTTGGTAACTTTCACTTTCTTACTTTCAG CCTGTGGTGTAATCATTCACAGTATGGTTATTGTTTGTATTGTCTGTATTGTATTGTAGTTGAGAAGAGGCTTGTTGAAG AGGTTCGAAAGCATGATATTTTGATTATTGTCGGCGAAACTGGAAGTGGGAAAACCACACGTAGGTTACATTTTATCCTA GATTGTGATTATGATTATATCCTTATTCCTTCATAATTTAGATTTTTCACCATGTTGTGTCTATTGCATTGTGCTGTGTA GAGATTCCGCAGTTTCTATTTGATGCTGGACTTTGCCATGATGGGAAAGTTATTGGGATAACTCAACCCAGACGTGTGGC TGCTGTTACTGTGGCCAAACGTGTTGCCGAGGAATGTGGTGTTGAGCTGGGCCATAAGGTTGGGTATTCTGTTAGATTTG ACGATGCTACTTCCAGCTCGACAAGGATCAAATATATGACAGATGGCTTGCTTCTGAGGTAAAACTTTTATGTAACTTGG ATCACTTGATTTCTTTACTGGGGGTGTTGCCTATTAAGACATGATGGTATTCCCTTTTTTTAGACCACCTGGCACCTGTC TTTTTGACGTGAATTAAGATGCTTGTTGATTTCAAGAAACTAAGGAGGTTTCAAATTTAAATTACTTTTTCTATGGTTTT GTAGATACAGTTTTTATGTAGGAGAGTTGATATAAATTTCATTGTGCTTACAGAGAAGCATTGCTGGATCCGTATCTTTC TAAGTATTCTGTCATAATCGTCGATGAAGCTCATGAGAGAACTGTCCATACTGATGTGTTGTTGGGCTTGTTGAAAAATG TACAACTTACTCGGTCAAGGTCTATCAGTGATGGTCAGGGCCTTAATTTTGGGAACAAACATGTAAATAATGTCTTGTTG TCAGACAAAGAGAATGGTCAGAGTAGCAGTTCTCTTAGAAAGGACCACCACAAGAAGATTTCTCCACTGAAGTTAATCAT CATGTCTGCAAGTCTGGATGCTCGTGCTTTCTGTGAGTACTTTGGTGGTGCCAAAGCTGTTCACATTGAAGGGAGACAGT TTCCTGTGGATATATTTTATACTCGTCGTGCAGAGACTGATTATTTAGATGCTGCCTTGATAACTATATTCCAGGTCATT GGTTTATTCTGACCGTATAATTTCATTCTGTGTATGCGTTTATGGTATTTGCAGTTTCACATGTCATTCATTATCCTGTT CTTTTCATTCACGTTTGTGCATTGCATGGTTATTCACGCATATTGCTGCTTTTATGTATTATATAAATTTATAATATTGC GGTGTTGACTGAGAAATAAAGTTCATATCTTTGATGTAATAGATCCATTTAGCGGAGGGTCCTGGTGATATATTAGTATT TCTTACTGGGCAAGAGGAGATTGAATCTGTTGAAGGACAGATCAAGGAGAAACTCACACAATTACCTCAAGAAAGTCAAA AGCTTCTAGTTGCGCCTATATTTGCAGCTCTTCCATCTGAGCAGCAACTGCGAGTCTTTGCACCACCTCCATCTGGGTGT CGCAAGGTATCCTAGCCATACATTTGTTCTTTCTTTTTAATAAGTGTATTAATTAATTGTGGATAGAATTAACTAAAAAA ACAGGGGAGCGAATCTTTCTTTTTAAACAGTTGACATGTTTTATCTAGGTTTTCATTAATTCTCTTGAAGCACTCTATTT CTCAATCACAATAATTGCAAGTAATGCTGGTTGCCTTATTTAGAGTCTCATTAGGTTTAGGAGTTAGGATTCATATTGCT TTTTTTTTTTTGCATATTTCTGTACTGGAATTTCTCTTGGGCACACATGACTTGTATAATGATCATCTTCCCCTTTCATC CATTTTTCATGATTGGTAACACACGGTTTACCTCTGACCAATTTCATGCTGACAATATTCTGCACTATGAATGTGATCCA GCTCTTTTGATGTCAGTGTAAGAACTACTTGTACCATTTTTCCTAGTTGTCACACTCACCCAAATGCTTCTACCAATATT TCTGTATACTAACTGACAATCTGGTGATCCTTAACCCAACATCATATAATATGATGTCATTAAGAGTCTACAACTGATTC CATCTTTTCCATCACTTTACTAATGGATTATTGCACTCAACTGACACCACTCCTTTAGGAACTATGTCATCTGAATTGGC TACAATCCCTATAAATAGTACTTGAATGCACGAAATAGTTTCTGTCAGGACCATATAATTTTTTACTGCGCATCACTTAT TTAATGTAAGCTTATGTATATTTAAAATAACATGAGATTTTTACCATATCAGGACTCAGGTAATCACTAATCACTTGTTT CTAATTGTATTCAACTTAGCTCTCTTCAAGCAAAAAAACTTAGTTCTCTGTTGTTTTCGTAGGTGATATTGGCGACTAAT ATTGCTGAGACATCAGTAACAATTCCTGGAATCAAATATGTAATTGATCCAGGATTAGTTAAAGCACGTTCCTATGACCC TGGAAAAGGTATGGAATCCTTGATTATAGTTCCTACGTCCAAGTCTCAAGCTATGCAAAGAAGGTATGGTGCTGGATTAA ATTTGAATCTATGAAATGTTTGATTATTGCTGCAAATATTGGCTGTGTTGATTGAGTTATTGTGGTGAAAATAAGCTTGT CCCAGTTTGATGATGTCTTCCTTTCTTTATTTCCAAGTTCAGTTTTTGTAATGCACGCCTTTGGTTTTCCTTAAAAACAT GGTATTTACTTAAAAACTTGAGATGTGAATCTTTCATCAAAGTTTCTATTTCATATTTAGAATGATTGAGGATGCATGTC CTATTTTTAATATTTCATTTGTAGGTGATTGAGAAGGTTACAGATCATGTAATGTATATTATCAAAATATAAAAAATAAA CATTGTAATGTAAAGCATCATTTCTTTTTCATGAAATATTTTCTTAACTATTTACTTTATATAATAGCTCATTCTTTGAT TCTGGTTTGTGCTTTTTAAATCTTATTTTGGTTATAATGATTGATATGTTGTATAGGTAGTCAATTTTAGCCGAATTATC TTAGTGAAACCAATACATTTAAAATAATTTTTCTGGAAGAGTAGCAGAAATTGATTATCTACTTTTTGGTAACAGTGGGC GTGCAGGGCGTGAAGGACCTGGAAAATGCTTCCGTCTATATCCAGAAATTGAATTCGAGAAACTTGAGGATTCAACAATG CCAGAGATTAAGCGCTGCAACCTTTCTAATGTCATTTTGCAGCTTAAGGCTTTGGGCGTTGATGACATATTAGGGTTTGA TTTCATTGAGAAACCTTCAAGGTAAAAACTTTTTCAGAATTTTGGTTTTACAGTTTTCTTACACTTGCATATTCGTGGAT ATTTATGCTCTTCATATTCGTGGACATTGTGAAACTGAAGGAAGCAAGACGATGGGAAGATGATGAATAACTAATAAGTT TGTTGGATGTACATGATAAAATACAATGAATTTGGATGACTCACCATATCATAGTATGGAATTATAACGAGTAAATAATC AGGCATTTCCTTTATGCTTTGGTGCCTGTATGACTAAATTAACTCTGCTTGAACTATTTAAATTTGGTACATTTGCTATT ATATTGCATTTTCTAAAGCAGGTCCTTTTATCTTGAGGAATTAAACTGCTTTTATGTCAAACCTTACCAACTAAGCAGTT AGCAACCTTTCAAAGAATACCAATGTTAATAAACAGCTCTGTTTAGGTAGATGTAATAAGAGGCACATAAAGAGTTTAGA AATCTATTCCTTTGCATCAGTCAGTAGTGACGTGAGTTAAAATATTTGAAATTTTTATTGATATGTTGTCGTGTGTATTG TACTCTGAAACTAATTTAATTTTTTTAGGGATCTTTATTTGTTAGTTTACTCTTTAAAAGTATTTTACCAGGCAACAAAT TACTCAAAGACTGTGCATGTTTCAACAGGGCAGCTATTATAAAATCATTGGAGCAGCTATTTTTATTAGGTGCTCTAACA GATGAGTGCCATCTATCTGATCCAGTTGGGCGTCAAATGGCTCGACTGCCTTTGGATCCTGTTTATGCCAAAGCTCTTAT TTTAGCTAGTCAGTTTAACTGCTTGGAAGAGATGTTGATAACTGTTGCAATGCTTTCTGTGGAATCCATATTCTATGCTC CTCGTGACAAGTTAGAAGAGGTTTGAGGAGTGAATTCTCATTGTAGTACATTCTTGTCATATTACCTTTTGATGTTATGA TGTAACATGAATACGAAGATGAATCATTGATTATGTACTACACTAGTTCATCACTCTATTTGACCATTTAACAATTTTTT TGTAAATATCATATAAATGGTTCAAATATTTGCAATTCGTAATGACTGGCTGAAGATTATATAGTCTTTCATGTTTACAT ATACATCACCCTTTCTCCCTTCTATGTACTCATTTATTGTGTTTGTCCCATTTTTCACCAGTCGAGAATTGCAACGAAAT GCTTCTCAAGTCCAGAGGGAGACCACATCACTTTGATTAATGTGTATCGAGCATCTAATGATTTCTTGGAGAAGAGATCA ATGGAAATGAGTAAACCAAAAAGTGAAAAGGTTTTGAGAAAATGGTGCAAGGAAAATTTTATTAATAGCCGTTCTCTTAG ACATGCTTGTGACATTCACAGGTAAGTTGTATTGTGTTATAAGTATATTTCAAGGCATCTATAACATAGATATTTATGCA TTCATTTGTAAAACACTTTTTGCAGGCAGATTAAGGGACATGTTCAACAGATGGGTCTGAATCTTGCTTCCTGTGGAGAT GATATGCTTCAATTCCGCAGATGCCTTGTTGCTTCCTTTTTCCTCAATGCAGCTATAAAGCAGCCTGATGGAACCTACAG GTATCTAATTCAATTTAAAAATTATTGGCAAAACCCATCTGGGTAGCTTCCCATCTATTCCCTTTGTGATAATCAAACCA GTGTTATCAAATATCTGGCATGGCGGGCGGAATCTCATGACAGGTTTTTGGCTCTCCGCCATGGCCGATAATTCGCCATA ATCCACCATCTGTCATCATTATTTGTTAAATATGGCTGATTTTTGGCTTTTCGCCAGTCTGCCATCCGCCATTAACAACC TTGAATCAAACTGTTTGCGAAAGTATCTGTTAGTTCTAAAATTCTCATCTGGATTATGACTCACTAATTGGAATTCGTAC CAGCATATATAATTTTATCATATATTTGCTTTTAAAGACTCCCTCATTGCTTTAATCACATGCAGGGCTTTGGCCAGTGG TCAGGTGGTGCAGATCCACCCTTCTTCTGTATTATTTCGGCAAAAACCAGAGTGTGTAATATTTAACGAACTTCTCCAAA CTAATAACAAGTATGTCCGGAATTTAACTAGAGTTGACTACCTATGGTTAACTGAACTTGCTCCTCAGTACTATGCCATG CAGAACTAA
CDS sequence (LotjaGi1g1v0718000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGATGGCTTGCTTCTGAGAGAAGCATTGCTGGATCCGTATCTTTCTAAGTATTCTGTCATAATCGTCGATGAAGC TCATGAGAGAACTGTCCATACTGATGTGTTGTTGGGCTTGTTGAAAAATGTACAACTTACTCGGTCAAGGTCTATCAGTG ATGGTCAGGGCCTTAATTTTGGGAACAAACATGTAAATAATGTCTTGTTGTCAGACAAAGAGAATGGTCAGAGTAGCAGT TCTCTTAGAAAGGACCACCACAAGAAGATTTCTCCACTGAAGTTAATCATCATGTCTGCAAGTCTGGATGCTCGTGCTTT CTGTGAGTACTTTGGTGGTGCCAAAGCTGTTCACATTGAAGGGAGACAGTTTCCTGTGGATATATTTTATACTCGTCGTG CAGAGACTGATTATTTAGATGCTGCCTTGATAACTATATTCCAGATCCATTTAGCGGAGGGTCCTGGTGATATATTAGTA TTTCTTACTGGGCAAGAGGAGATTGAATCTGTTGAAGGACAGATCAAGGAGAAACTCACACAATTACCTCAAGAAAGTCA AAAGCTTCTAGTTGCGCCTATATTTGCAGCTCTTCCATCTGAGCAGCAACTGCGAGTCTTTGCACCACCTCCATCTGGGT GTCGCAAGGTGATATTGGCGACTAATATTGCTGAGACATCAGTAACAATTCCTGGAATCAAATATGTAATTGATCCAGGA TTAGTTAAAGCACGTTCCTATGACCCTGGAAAAGGTATGGAATCCTTGATTATAGTTCCTACGTCCAAGTCTCAAGCTAT GCAAAGAAGTGGGCGTGCAGGGCGTGAAGGACCTGGAAAATGCTTCCGTCTATATCCAGAAATTGAATTCGAGAAACTTG AGGATTCAACAATGCCAGAGATTAAGCGCTGCAACCTTTCTAATGTCATTTTGCAGCTTAAGGCTTTGGGCGTTGATGAC ATATTAGGGTTTGATTTCATTGAGAAACCTTCAAGGGCAGCTATTATAAAATCATTGGAGCAGCTATTTTTATTAGGTGC TCTAACAGATGAGTGCCATCTATCTGATCCAGTTGGGCGTCAAATGGCTCGACTGCCTTTGGATCCTGTTTATGCCAAAG CTCTTATTTTAGCTAGTCAGTTTAACTGCTTGGAAGAGATGTTGATAACTGTTGCAATGCTTTCTGTGGAATCCATATTC TATGCTCCTCGTGACAAGTTAGAAGAGTCGAGAATTGCAACGAAATGCTTCTCAAGTCCAGAGGGAGACCACATCACTTT GATTAATGTGTATCGAGCATCTAATGATTTCTTGGAGAAGAGATCAATGGAAATGAGTAAACCAAAAAGTGAAAAGGTTT TGAGAAAATGGTGCAAGGAAAATTTTATTAATAGCCGTTCTCTTAGACATGCTTGTGACATTCACAGGCAGATTAAGGGA CATGTTCAACAGATGGGTCTGAATCTTGCTTCCTGTGGAGATGATATGCTTCAATTCCGCAGATGCCTTGTTGCTTCCTT TTTCCTCAATGCAGCTATAAAGCAGCCTGATGGAACCTACAGGGCTTTGGCCAGTGGTCAGGTGGTGCAGATCCACCCTT CTTCTGTATTATTTCGGCAAAAACCAGAGTGTGTAATATTTAACGAACTTCTCCAAACTAATAACAAGTATGTCCGGAAT TTAACTAGAGTTGACTACCTATGGTTAACTGAACTTGCTCCTCAGTACTATGCCATGCAGAACTAA
Protein sequence (LotjaGi1g1v0718000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTDGLLLREALLDPYLSKYSVIIVDEAHERTVHTDVLLGLLKNVQLTRSRSISDGQGLNFGNKHVNNVLLSDKENGQSSS SLRKDHHKKISPLKLIIMSASLDARAFCEYFGGAKAVHIEGRQFPVDIFYTRRAETDYLDAALITIFQIHLAEGPGDILV FLTGQEEIESVEGQIKEKLTQLPQESQKLLVAPIFAALPSEQQLRVFAPPPSGCRKVILATNIAETSVTIPGIKYVIDPG LVKARSYDPGKGMESLIIVPTSKSQAMQRSGRAGREGPGKCFRLYPEIEFEKLEDSTMPEIKRCNLSNVILQLKALGVDD ILGFDFIEKPSRAAIIKSLEQLFLLGALTDECHLSDPVGRQMARLPLDPVYAKALILASQFNCLEEMLITVAMLSVESIF YAPRDKLEESRIATKCFSSPEGDHITLINVYRASNDFLEKRSMEMSKPKSEKVLRKWCKENFINSRSLRHACDIHRQIKG HVQQMGLNLASCGDDMLQFRRCLVASFFLNAAIKQPDGTYRALASGQVVQIHPSSVLFRQKPECVIFNELLQTNNKYVRN LTRVDYLWLTELAPQYYAMQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 48 | 48 | 2.8E-193 | – | |
| ProSiteProfiles | 1 | 120 | 120 | 9.868 | ||
| SUPERFAMILY | 1 | 467 | 467 | 1.31E-78 | ||
| PANTHER | 1 | 48 | 48 | 2.8E-193 | – | |
| CDD | 1 | 119 | 119 | 3.87096E-37 | – | |
| ProSitePatterns | 20 | 29 | 10 | - | ||
| PANTHER | 83 | 580 | 498 | 2.8E-193 | – | |
| PANTHER | 83 | 580 | 498 | 2.8E-193 | – | |
| Gene3D | 123 | 296 | 174 | 8.9E-69 | – | |
| CDD | 124 | 285 | 162 | 1.65708E-81 | – | |
| ProSiteProfiles | 138 | 317 | 180 | 16.464 | ||
| Pfam | 147 | 276 | 130 | 1.6E-14 | ||
| SMART | 169 | 277 | 109 | 3.7E-18 | ||
| Gene3D | 322 | 416 | 95 | 4.5E-23 | – | |
| SMART | 337 | 428 | 92 | 2.8E-25 | ||
| Pfam | 338 | 462 | 125 | 6.1E-20 | ||
| Pfam | 500 | 576 | 77 | 4.7E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. |
Expression pattern of LotjaGi1g1v0718000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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