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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0725600 |
| Transcript ID | LotjaGi1g1v0725600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb-like transcription factor family protein; TAIR: AT5G06800.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q0WVU3|PHL5_ARATH Myb family transcription factor PHL5; TrEMBL-Plants: tr|V7CVV7|V7CVV7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0725600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129662236..129665134) extracted from Lotus japonicus Gifu genome v1.2.
AAAATGCACTTCGTTAATGTCAATTCATAGTTGTTCATTCTTATCCTTTATTCAAGAATAATCATATTAGACATTGACCT TGCATGGTAGCATTTATACAATAAGATTCTGGGAATACAAAAGAGAATTTTATGCCATTTAGACTATTGTCACCTTTTCA ATCTTCTTCTTTCAATTCCACCCCTTCCATTTGTCCCTCCTTTATAAAGATGAACTTCCAAAGAGTTCTATAGGCTAGCA CCTCATAAATTTGCACAAGTATCCAAGCTTAATTTTTTTTGTGTGAATATTTGGGTACTTTTCAATGAATGAAAACAAAA TTGATTGTGTGGGACTGATTCAACAAAGTCATGGACTAACTGGTGATTTTGATTCTGAGTTTGGCAATCATTCTAACACA ATTATGAGCAGGTTTGAGTCACCAGCTTCTGCTTTTTATGCAGCAGAAAATTGCATGGGCTTCTCAGAATATGATTACCA AGTTGGTAATACTAATCAATCTTTGAGCTCTCAGTTAAATAAGGTTCATGATTTGGAATTCCCTTTATATCAATCTCCAA GGTTAAACCTTTTCATGAATTCAGCAAACCAACCTGACCCTTTATCAAACACTTTGCAAGCAATGGTGAAATCTCAATTG AATAGTAATCAAGACAACAAAATTTCATGTGGGGATTTTCCCAGTTCCAAGTTTGTTCCAATTGAACCACAGAAGCTTTT ATATGATGGTGTTACTTCAGTTAGCTGGAGCTCATCAAGTCTTAACAAAGGAAATCAGGATTGCATGGTAAGTGTTTGTG GAAAAACCAGAACCAGATATTGATTTTATCCTTTAATTTTCTCCATTATTTGAAGATTCAATTGGTTTATATTGTGGCAT CTGTTTGCAGGCTGTTTCTGGATCTTCAGGAAGTGTGTCAACTGCTTTTGGAAACTCTTCTTCTAATGGATCAGTGATCT TGAGTAAAACGCGTATAAGATGGACTAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGTGGTGCTGAT AGTAAGTAACTTGCTAAAATTTTTCAATTGGAAAAACATATATTTTACACCTGTTAGTTCTCTAAAGAATGCTTGATTAC AGAGGCAACACCAAAAGCAATATTGAAGATGATGGACTCAGATGGTTTGACTATCTACCATATAAAAAGTCATTTGCAGA AATACAGAAATGCAAAATTCATGCCAGAGTCAGCTCAAGGTAATTTCTTTCATATCAGCACAATTGCAGTCTAGTTTCAT TCGGTGCTTGAATTTATAAGCATTCTTGTAATAATGATCACTTTCACTCCTCATACTGAATCTTAAAAAATGTCATGTTT CAGGGATATCTAACAAAAGAGTCCATACAGAAGATGTGCATCATCTTGATTTCAAAACGTAATGCTATTTTTTTTGCCTT AACTACTAGTATAATTCTAGAGTACTTCCATTAAGATGCAGAAACTATATAAATCTGCTAAATTATTGATTTGCAGTGGC TTGCAAATTAGAGAGGCACTTCAGCTGCAATTAGATACTCAAAGGCGTCTTCATGAGCAGCTAGAGGTACATCCTTGCTA TGGTTTTCTCTTACAGTTCTGTATTTGTTTATGTATATTTACTTGTTCTCCTGACCTATCAGGTTCATACTTGGCACTTC ATTTTTATGACCTTTTCACTCTCTATAAAAAGCTTCAGAATTGGCCAAATCAGCTGAAAGGCTCTTGAGCATTGAATTTC ACTTTTTTACCTTAAGAAAAAGGGGACTTCTCTCATGCTCTCTCTAATTTAGAGGATTGTGCTGTCCTCTACTTGTTAGT CCCTGAAATTCAAAATTCAAAACTCTATTATCTATTCTGACATGCTCAAAGCTAGCTTACATTCTTGTACGACTTTCTCA TGCGATTCATTTTTCTTTTTCCAAGCACACAATTTGATATTTAGTGTAAAATTACAGTTTCCCAAAAGGCTACTCCTTTT AAGAAAAAGATAAACCACTTCATCCAATTTTGGTATGGGAAGAAAAGCATTGTTGTAGAGCCTACAAGGCTGCAATCTCA GTAATTAGGTACATAATCTAGTGTGGTTATATATTTTATACTAATGAAAATAAGCATGAGTAAGGGTAGTTATAGGTTGA AACAATGTTGAGGAAACTGGATGTTAAAATTAATGAATCAGTTTAAAATAGATGGATTCTAATAATACTCTTCTTGGTCC AGCTTCAGAGAGCATTACAGTTGCGAATTGAAGAACAAGGCAAGCAGCTGAAAAAAATGTTTGACCAGCAGCAGAGGACA AGTGATAACCTCTTGAATACTCCAGATATAGCCAATGATGCTACAGCAATTAGTCATAAAGATGTTGAAGGTTCTGTTTC TGAAGGGGCTTCAGATTCCTTCTTTTCTTCCAAATCCACAAAAATAACATAATTTGATAGTTACTTATGAATAACATTAC AGTTTTACCAAAAGTTGACTTACTCCTTGTTACAAACAGATAAACCAGCCATTCCATGCATTTTTTGTTATGGGAAGAAA AGCATTGTTGTAGAGCCTACAAGATTGATAACTTAGTAATTATGTACATAATATAGTTTGGTTATATATTTTATAGAATA GAAACCAAAATGATGCAGAATGTCAACTGCACAAGGTGAACATGGTTTGACTAGGTGCTCATGGTTAGCTTCAGCCTGCA GGTATCCAACTCATTTCTATGGTTTGCCATCTACCCCAACCCAACTCCAAATTACCCCAATCTTTGTATTTCTTTTCAAA AATTTATTCTTCTCCTTAACTTATAAGAAGGAGCAAATGTATGTGTTAGTCATTCATCCAATACTTGAAGCAAATTTCAG TTATAGAAGCCATTTAGCA
CDS sequence (LotjaGi1g1v0725600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGAAAACAAAATTGATTGTGTGGGACTGATTCAACAAAGTCATGGACTAACTGGTGATTTTGATTCTGAGTTTGG CAATCATTCTAACACAATTATGAGCAGGTTTGAGTCACCAGCTTCTGCTTTTTATGCAGCAGAAAATTGCATGGGCTTCT CAGAATATGATTACCAAGTTGGTAATACTAATCAATCTTTGAGCTCTCAGTTAAATAAGGTTCATGATTTGGAATTCCCT TTATATCAATCTCCAAGGTTAAACCTTTTCATGAATTCAGCAAACCAACCTGACCCTTTATCAAACACTTTGCAAGCAAT GGTGAAATCTCAATTGAATAGTAATCAAGACAACAAAATTTCATGTGGGGATTTTCCCAGTTCCAAGTTTGTTCCAATTG AACCACAGAAGCTTTTATATGATGGTGTTACTTCAGTTAGCTGGAGCTCATCAAGTCTTAACAAAGGAAATCAGGATTGC ATGGCTGTTTCTGGATCTTCAGGAAGTGTGTCAACTGCTTTTGGAAACTCTTCTTCTAATGGATCAGTGATCTTGAGTAA AACGCGTATAAGATGGACTAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGTGGTGCTGATAAGGCAA CACCAAAAGCAATATTGAAGATGATGGACTCAGATGGTTTGACTATCTACCATATAAAAAGTCATTTGCAGAAATACAGA AATGCAAAATTCATGCCAGAGTCAGCTCAAGGGATATCTAACAAAAGAGTCCATACAGAAGATGTGCATCATCTTGATTT CAAAACTGGCTTGCAAATTAGAGAGGCACTTCAGCTGCAATTAGATACTCAAAGGCGTCTTCATGAGCAGCTAGAGCTTC AGAGAGCATTACAGTTGCGAATTGAAGAACAAGGCAAGCAGCTGAAAAAAATGTTTGACCAGCAGCAGAGGACAAGTGAT AACCTCTTGAATACTCCAGATATAGCCAATGATGCTACAGCAATTAGTCATAAAGATGTTGAAGGTTCTGTTTCTGAAGG GGCTTCAGATTCCTTCTTTTCTTCCAAATCCACAAAAATAACATAA
Protein sequence (LotjaGi1g1v0725600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNENKIDCVGLIQQSHGLTGDFDSEFGNHSNTIMSRFESPASAFYAAENCMGFSEYDYQVGNTNQSLSSQLNKVHDLEFP LYQSPRLNLFMNSANQPDPLSNTLQAMVKSQLNSNQDNKISCGDFPSSKFVPIEPQKLLYDGVTSVSWSSSSLNKGNQDC MAVSGSSGSVSTAFGNSSSNGSVILSKTRIRWTKDLHEKFVECVNRLGGADKATPKAILKMMDSDGLTIYHIKSHLQKYR NAKFMPESAQGISNKRVHTEDVHHLDFKTGLQIREALQLQLDTQRRLHEQLELQRALQLRIEEQGKQLKKMFDQQQRTSD NLLNTPDIANDATAISHKDVEGSVSEGASDSFFSSKSTKIT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 20 | 166 | 147 | 2.0E-155 | – | |
| PANTHER | 20 | 166 | 147 | 2.0E-155 | – | |
| PANTHER | 169 | 358 | 190 | 2.0E-155 | – | |
| PANTHER | 169 | 358 | 190 | 2.0E-155 | – | |
| ProSiteProfiles | 184 | 244 | 61 | 11.082 | ||
| Gene3D | 185 | 244 | 60 | 1.5E-26 | – | |
| SUPERFAMILY | 185 | 241 | 57 | 3.23E-17 | ||
| TIGRFAM | 187 | 242 | 56 | 1.3E-23 | ||
| Pfam | 191 | 240 | 50 | 4.3E-8 | ||
| Pfam | 271 | 318 | 48 | 7.5E-18 | ||
| Coils | 274 | 294 | 21 | - | – | |
| MobiDBLite | 339 | 361 | 23 | - | – | |
| MobiDBLite | 347 | 361 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0725600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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