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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0726000 |
| Transcript ID | LotjaGi1g1v0726000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger CCCH domain-containing protein; TAIR: AT3G12130.1 KH domain-containing protein / zinc finger (CCCH type) family protein; Swiss-Prot: sp|Q7F8R0|C3H14_ORYSJ Zinc finger CCCH domain-containing protein 14; TrEMBL-Plants: tr|I3T0H6|I3T0H6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0726000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129709502..129713099) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTCAACTCAATTTTTGTCTCACCCTTTATCATACCCACACACCGTCTTCACTCTCTCTCTCTCTTTCTCTCGCTTTG CTTCTTTGTTCTCCAAAACCCCTTTCTCAGGGTTACGATTAGGGTTAGGGTTTTCCCACCTTCTTCGTTCACTTTCCTTC AGATCTCTCTCCAATTGAAGCTTCTCCTGTTCCGAATCCTCTGTTCGTTGCTCTATTATCCCGATCCGGATCTATGGATT TCCGCAAGAGGGGAAGACCCGAACCCGGTTTCAACTCAAATGGAGGAATCAAGAAATCTAAGCAAGGTTTGGTTTTTTGC TCTAACGCTCTTATGGGTCTTGCTCTATGGTTTCTTCTTGTTTAAAAGTCGTTTGCTTTTCGTAGTTTGAGTCACTTGTG AGTTGTGACACTACTCTGCAAGTTCTTGTTCTTTTGTGTGTTTGTGAATGTAAAAAGAAGCTGTTATTCAAACTTCTACT GCTAAATTTCAGTAGAACTTGTATATGGTATGTTGATAATTGAGGAGTTAATTCAATCTCTTCTCACGCTCACGAACATA CCTAAATCTCTGGTCAAATTGTTACAGATTGGTCTATTTTTCAGTAGTTTGGGCAGTGTAAAACTTAAGAACTGGAATTG CCCCTTTTTCCTTTCAAAACTTTATGTTAGATAATGAAGTTATAGAATCTCTAAAAGCTTTCACTCAAGCAAGTGTATTT ATCTTTTTTAAAAGATATTGTTAACAACTTTGGAGTTGAGTGTACAAGATTTAAAAGCAAGAGAATGTTAACTGAGAACA AGTAATAATGTTTTGCAACAGAATTGGAGTCATTATCATCTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTC AGGTGCTAATCTATTCCTGACTTAATAAATAGTTTAACTTTAAACTGCCATGTTTTATATTCTTAATTCTTAATAATGTT TGATTATATAATTATTTTAAGGCTAAATTGTTGAATTGCCTTAATAATAAATTATGCGATTCTGCTAATCAACTGGATAT TCAAAGCTTTTATACAGGTACATATTGATCTAAACAAGATGTAACGGATTAGTGGTTTATAAACAGAGTACCAAAAAGAT AACACATTGCTGGAGAAAGAATAGTTGGAATGGAGATCACTATATCAATGAAAAATTGATCATTTTTCCACTTCATGAAT GCCTTACTGCTAAATTAGTTTGATTCCATTAATTACTTTTAACATCAAATTGCCTGCTTTTAGTAGATTCTATTGCTTAC GGACCCACCTTTCGATTGGTAAGCTATTAACAAACAAAGATTAATTGAAAATTCATTGGTTGGGTCAGGTATCATGCCAA ATTATCAAGTGTAAATTTGTGATTTTGTAACTTACGCGTTGAAAATAGAGAAACAACTTATCTGTTACCTTTAACCGGAA ACATTTGAATATCAAAATTCTGATTGTATAAATCTTGCGGCCAGAATAAGAGATGAATTGGATCAAGATATTACCTCATA TTCGATATACTCCCTTGTTATATTTACTTTCTTTATAGGTCTTGATTTGCTTTTGAGGGATGGTGACATATTGAAACTCG ATCTATTTTGTTTGTTGCTTGGTACCATTGTTTGTCACCAAATTTTAGCAAAAGTCTTGCTTAGTTAGTTAGTTTGTTGT TCTTTGATATAAATGTTTCGTCTATCCAAAATAAAAATTTTCAATATAGATGAGGTTAGTAGGTAATCCTTTGCCGATGT AAATTTATGTTTTAAATTTCTTACCTTTGGTTACTTGGCTTTTTCATATAATTACATGATAGGATTCATTTGACTCTATC TTAATTATTATTGGCAATTGCCTGTGCTTCTAAACAACTCTCTGTAATTTATCATAAATGCTGGTTTCTTGTACGTAGTA CTTTTATTTGCTTATTTTGCCTTGCTAGATCACATTTCCTTGCTCAGTTTCTTCCCTTCCCCTCTGATGTGGGTCTGCTA GACCTCTCCCATATGACCTATTTCTCCTGTTTGGTTTTCCCTACGTCAAACCAAGAGCTTGGTTTTGGAATTTAGGTTTT TCTCTAGTGATATTTGGAGGGAATATCCTGGAACTTTGTGAGTCTAGGATTTCATAGTGTGTGACAGTCCACACAACAGT AGATCCCTGAATGGTCATTTCATTATTTGTCCAGTTCAAACTCACCTGCTTTATATTTTGCCAAATAAGCCTTAAATCTG TTTCCATGTTGACATTCTTATCTTGAGGAATGTGGAAATGAGTTACATACTATGTCCAGTTGCACCTTAGAAAAGGGGAT ACCTGCCATTTTTTTGGGTGGTCATTACTAATACTTGGTTTAATGTAATCTAATTGTGCCATATTTTTGTTTTGCAGCAC TGCTGGCTGCCCATTTGGTGAGAGCTGCCACTTCTTGCACTATGTTCCGGGTGGTTATAATGCTGTTGCTCATATGATGA ATCTAGCACCTTCAGCACAAGCGCCACCTAGAAATGTTGCTGCTCCACCACCACCTGTGCCTAATGGGTCCACACCTGCA GTGAAAACTCGCATATGCAACAAGTTTAACACTGCTGAAGGCTGCAAATTTGGTGACAAATGCCATTTTGCCCATGGTGA ATGGGAACTCGGCAAGCATATTGCTCCTTCATTTGATGATCATCGTCCGATTGGACATGCCCCAGCAGGTCGTATTGGTG GTCGAATGGAGCCTCCTCCTGGTCCTGCTACAGGCTTTGGTGCCAATGCCACTGCTAAGATCAGCGTGGAAGCTTCGCTG GCCGGAGCAATCATTGGGAAGGGTGGTGTGAACTCAAAGCAGATTTGTCGTCAAACTGGAGCCAAACTATCAATTCGAGA GCACGAGTCTGATCCAAATCTTAGAAACATTGAACTTGAGGGAAGCTTTGATCAAATTAAGGAAGCTAGTAACATGGTGA AGGATTTGCTGTTGACCCTGCAAATGTCTGCACCACCTAAATCAAACCAAGGTGGTGCTGGTGGTCCTGGCGGCCATGGC CATCATGGAAGCAACAACTTCAAGACAAAGCTGTGTGAGAATTTTGCAAAGGGAACTTGCACTTTTGGAGAACGATGCCA TTTTGCACATGGACCTGCTGAATTGCGGAAATGAGGAGTGGGAACTTTCTTTTATTCAGGTGGATTGTCGTAATAGTCAG GACTATAATTATTATTATTAATATGTTGTGCATTGCTACTTAGTGGTACTGACAGAACTTCTGATGCTAAGTTTTGCTGT TTTGAGTTTCTTTACTTAGCTACTTGAACCTTCCCATTGCAACTTTCCTTTATTTGTTAATTGATGCTCTCTTTAGGTTA CCAATTACTATTCCTTATGTCCATTTTTCTTCTATATCAGAATTTATAACGATGTTGATTTTTTTTTTTGGTTACAAGAG GAAAGCTAATAACGATGTTGATTTGCTAGGGGTTGTGAAACAGAATGTTCATGTGTGAGTTAATACATCAGGGAACCTTG TCTGTCCTTATTTTTTGTTAGAAGATAAGTAAATTAACATAAACAAACTCAGGACCAGAGGAGCTAAATAATCAGAAG
CDS sequence (LotjaGi1g1v0726000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTCCGCAAGAGGGGAAGACCCGAACCCGGTTTCAACTCAAATGGAGGAATCAAGAAATCTAAGCAAGAATTGGA GTCATTATCATCTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGCTGCCCATTTGGTGAGA GCTGCCACTTCTTGCACTATGTTCCGGGTGGTTATAATGCTGTTGCTCATATGATGAATCTAGCACCTTCAGCACAAGCG CCACCTAGAAATGTTGCTGCTCCACCACCACCTGTGCCTAATGGGTCCACACCTGCAGTGAAAACTCGCATATGCAACAA GTTTAACACTGCTGAAGGCTGCAAATTTGGTGACAAATGCCATTTTGCCCATGGTGAATGGGAACTCGGCAAGCATATTG CTCCTTCATTTGATGATCATCGTCCGATTGGACATGCCCCAGCAGGTCGTATTGGTGGTCGAATGGAGCCTCCTCCTGGT CCTGCTACAGGCTTTGGTGCCAATGCCACTGCTAAGATCAGCGTGGAAGCTTCGCTGGCCGGAGCAATCATTGGGAAGGG TGGTGTGAACTCAAAGCAGATTTGTCGTCAAACTGGAGCCAAACTATCAATTCGAGAGCACGAGTCTGATCCAAATCTTA GAAACATTGAACTTGAGGGAAGCTTTGATCAAATTAAGGAAGCTAGTAACATGGTGAAGGATTTGCTGTTGACCCTGCAA ATGTCTGCACCACCTAAATCAAACCAAGGTGGTGCTGGTGGTCCTGGCGGCCATGGCCATCATGGAAGCAACAACTTCAA GACAAAGCTGTGTGAGAATTTTGCAAAGGGAACTTGCACTTTTGGAGAACGATGCCATTTTGCACATGGACCTGCTGAAT TGCGGAAATGA
Protein sequence (LotjaGi1g1v0726000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDFRKRGRPEPGFNSNGGIKKSKQELESLSSGVGSKSKPCTKFFSTAGCPFGESCHFLHYVPGGYNAVAHMMNLAPSAQA PPRNVAAPPPPVPNGSTPAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKHIAPSFDDHRPIGHAPAGRIGGRMEPPPG PATGFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFDQIKEASNMVKDLLLTLQ MSAPPKSNQGGAGGPGGHGHHGSNNFKTKLCENFAKGTCTFGERCHFAHGPAELRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 36 | 36 | - | – | |
| PANTHER | 15 | 296 | 282 | 1.0E-145 | – | |
| PANTHER | 15 | 296 | 282 | 1.0E-145 | – | |
| MobiDBLite | 17 | 36 | 20 | - | – | |
| SMART | 34 | 61 | 28 | 0.91 | ||
| ProSiteProfiles | 34 | 62 | 29 | 12.709 | ||
| SUPERFAMILY | 35 | 60 | 26 | 6.93E-6 | ||
| Pfam | 36 | 59 | 24 | 1.6E-4 | ||
| Gene3D | 95 | 131 | 37 | 4.2E-11 | – | |
| SUPERFAMILY | 98 | 130 | 33 | 4.32E-8 | ||
| SMART | 99 | 126 | 28 | 6.6E-4 | ||
| ProSiteProfiles | 99 | 127 | 29 | 13.61 | ||
| Pfam | 101 | 126 | 26 | 2.4E-6 | ||
| SUPERFAMILY | 158 | 240 | 83 | 2.63E-15 | ||
| Gene3D | 161 | 262 | 102 | 4.5E-16 | ||
| SMART | 167 | 237 | 71 | 3.4E-12 | ||
| ProSiteProfiles | 168 | 232 | 65 | 15.074 | – | |
| CDD | 170 | 233 | 64 | 2.23772E-15 | – | |
| Pfam | 171 | 233 | 63 | 3.0E-12 | ||
| MobiDBLite | 242 | 261 | 20 | - | – | |
| Gene3D | 263 | 296 | 34 | 1.2E-12 | – | |
| ProSiteProfiles | 265 | 292 | 28 | 17.028 | ||
| SMART | 265 | 291 | 27 | 5.2E-8 | ||
| SUPERFAMILY | 265 | 295 | 31 | 4.06E-8 | ||
| Pfam | 266 | 291 | 26 | 1.2E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi1g1v0726000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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