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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0727200 |
| Transcript ID | LotjaGi1g1v0727200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT2G42030.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3; TrEMBL-Plants: tr|A0A0L9U7P9|A0A0L9U7P9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0727200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129854333..129856554) extracted from Lotus japonicus Gifu genome v1.2.
TTCTTACTTGCTTGGACATTCAAGCTCGCATGGAAGAAGAGAACTCTGATCCTATGAACCTTAATTTGGATCTAGGTCCA AGCTCTGAGCTGGAGACTTTGGACATTCAAGCTCTCCTGGAGGAAAACAATTCTGGTGCTATGAACCTTGATTTGGTTCT TGGTCCATGTTCTGAGCTAACGACTGGATCCATAACCAATGAGGTTTTTCAAGGAACCAATGAAGCTTCAAGGCTGAGAG CACAACCTAGAGGGAGACATCCTCTCACCCCTCAACCTGAAGCAGGTCAAGATTATTTTCCTGACCCACCTGAACCCCAC AATATCTCAAGGGATTGTGCATTACAGGTTGGGGAAGGAAGTGTGGTGGTTGAGACAACAAAGAAGAAGGATGTTGTTGA AAAAGGTACTGACTCTTATGGGAAATTTTTTGAATGTAGTATTTGTTTGGATATGGCTAAGGACCCTGTTGTTACTTCTT GTGGCCATTTGTTTTGTTGGCGATGTTTATATCAATGGTTTCATGTGCATTCGAATTCTAACGAGTGCCCAAATTGCAAG GGAGTGGTGATTCTTAGGAATGTCACTCCAATATATGGTCCAAGAAATGATGCTGATGTGATTGAACAGGAAGGTTCCAA CCTTGAAATCCTTCCTAGGCCCCAAGCAAGGCGTGTTAATAGTCTGAGTCAAACACTTGAGAGAAATACAGTTCCGACCC CTATTGAAGAGATGCTTCAACGTGGTGCGAATATAAATGGTCTTACTCAAGATTTAGTTCAGTTCCATGAACCAGAAAAT GCCTATCATGAACAAGCTGAGATAGACACTCCCTTGCTGAGCAGTTTCTTGCCACCCCAAGAAGATCCTCCCCTTTTTGA TGACCTTGACTCCTTCTTAAGCGATATCATGAATTCAGGGAGTGACTTGAACATTGATGTAGAAATGAATTCCATGGAAT CCTTGTCAGCGGCTTCCTCTAGGAGGAGAAATAATAGTACTTCAGAAGTGCCTAATGTGAATGATGAAGATTATCAAGCT CCTAGGCCAGACGTTTGAGCTGATTATCTAAGTCTTCTTGATCAATGTAAGTGATTATCGAGTTGGTAAGATATTATTCT ACATGTCTGCGGATTTTTAGCCACCATACTTTACAAGTTTTTTTTTATGAGATGATTTAATTGTTTCCACTTAAAAGCGT CTCTAAAGGATTAAATCATTTAGAGTTTTGTCATCTCCAAACGATTTTTGCTATAGAATAACCATGAAAATTTCATATAT ATATATATAGTGGTTAATTATAATTTTCAACTCATGATGATATTTTATTTAATTGTATCACTTGACCTAATTGTTAGGCC ATATAGTCCCAAAGAAAAAATTTATAGGCTAGTGAGTGTACCATTTGACCCTTAGTATCCCCACAATGATAGTAATAGCT TTTGTTTTATTTTTTGTTGTTATTGAACGATTATAATTTTACTCTTTAATTCTTAGTGCTATGTAACTGGCACTTTGGTT GTGTTCTGTAATTTGGTCTATGACCTCTTTAATCATAATATCATTTGACTTTTAAAAAAAAAAACATGATCATAGGAGTT GGCATTGTTTTTAGTAAGATTCATATAATAGTTACCTCTGATTTTGTTCTACTGTAGTGAATTCTTTTGAAACAGTCAAA CAGATGAATACTTAACCTCTTTCAAAGTGAGACTATGTTGTTTGCACCTTTTCTTTTTCTTTGGTATCATCTTTATATGA TGATGGCCTAAGGATTTTCCTCATCTCAATCTCTGAAGAGGAATTAACATAAATAAATTTGTTGTGCTAATTTTTTTTTG TTTGCATAGATTTAGATTTGAAAATTTTAATTTGCTTCAGTTTCTTAAATTTGTATTTATTGTTGATGACTACATCTGAA TCAGTAATGTGTCTATTCTTGTGTTTAATGTTTATTTAGTTGTTTTACTAATTTCATTTTATGTTCTTGTGTCACCTTCC AGATCGATCAATTTCAATTCTTGGGGCAACAATTCAAGGTTGTTTTCTATAATGTGGGTTGTGCTTTCAGGAAGACCATT GATTCTTGATATATTGAACAATTATAGATATATTTTTCTAGCTAGTCTTAGTCTTTGTTTAGTGTTCTAAAAATAATGAT TTGGATGCCAATGATATGCCTAAGCGCATCTTTATGCTCCAAACTCTACTCGTGTTGTCAGT
CDS sequence (LotjaGi1g1v0727200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAAGAGAACTCTGATCCTATGAACCTTAATTTGGATCTAGGTCCAAGCTCTGAGCTGGAGACTTTGGACATTCA AGCTCTCCTGGAGGAAAACAATTCTGGTGCTATGAACCTTGATTTGGTTCTTGGTCCATGTTCTGAGCTAACGACTGGAT CCATAACCAATGAGGTTTTTCAAGGAACCAATGAAGCTTCAAGGCTGAGAGCACAACCTAGAGGGAGACATCCTCTCACC CCTCAACCTGAAGCAGGTCAAGATTATTTTCCTGACCCACCTGAACCCCACAATATCTCAAGGGATTGTGCATTACAGGT TGGGGAAGGAAGTGTGGTGGTTGAGACAACAAAGAAGAAGGATGTTGTTGAAAAAGGTACTGACTCTTATGGGAAATTTT TTGAATGTAGTATTTGTTTGGATATGGCTAAGGACCCTGTTGTTACTTCTTGTGGCCATTTGTTTTGTTGGCGATGTTTA TATCAATGGTTTCATGTGCATTCGAATTCTAACGAGTGCCCAAATTGCAAGGGAGTGGTGATTCTTAGGAATGTCACTCC AATATATGGTCCAAGAAATGATGCTGATGTGATTGAACAGGAAGGTTCCAACCTTGAAATCCTTCCTAGGCCCCAAGCAA GGCGTGTTAATAGTCTGAGTCAAACACTTGAGAGAAATACAGTTCCGACCCCTATTGAAGAGATGCTTCAACGTGGTGCG AATATAAATGGTCTTACTCAAGATTTAGTTCAGTTCCATGAACCAGAAAATGCCTATCATGAACAAGCTGAGATAGACAC TCCCTTGCTGAGCAGTTTCTTGCCACCCCAAGAAGATCCTCCCCTTTTTGATGACCTTGACTCCTTCTTAAGCGATATCA TGAATTCAGGGAGTGACTTGAACATTGATGTAGAAATGAATTCCATGGAATCCTTGTCAGCGGCTTCCTCTAGGAGGAGA AATAATAGTACTTCAGAAGTGCCTAATGTGAATGATGAAGATTATCAAGCTCCTAGGCCAGACGTTTGA
Protein sequence (LotjaGi1g1v0727200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEENSDPMNLNLDLGPSSELETLDIQALLEENNSGAMNLDLVLGPCSELTTGSITNEVFQGTNEASRLRAQPRGRHPLT PQPEAGQDYFPDPPEPHNISRDCALQVGEGSVVVETTKKKDVVEKGTDSYGKFFECSICLDMAKDPVVTSCGHLFCWRCL YQWFHVHSNSNECPNCKGVVILRNVTPIYGPRNDADVIEQEGSNLEILPRPQARRVNSLSQTLERNTVPTPIEEMLQRGA NINGLTQDLVQFHEPENAYHEQAEIDTPLLSSFLPPQEDPPLFDDLDSFLSDIMNSGSDLNIDVEMNSMESLSAASSRRR NNSTSEVPNVNDEDYQAPRPDV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 65 | 89 | 25 | - | – | |
| Gene3D | 114 | 204 | 91 | 1.0E-19 | ||
| PANTHER | 120 | 272 | 153 | 1.5E-60 | – | |
| PANTHER | 120 | 272 | 153 | 1.5E-60 | – | |
| SUPERFAMILY | 130 | 194 | 65 | 6.28E-19 | – | |
| CDD | 134 | 178 | 45 | 5.64122E-26 | – | |
| Pfam | 135 | 176 | 42 | 1.9E-9 | – | |
| ProSiteProfiles | 136 | 177 | 42 | 13.935 | ||
| SMART | 136 | 176 | 41 | 7.4E-9 | ||
| ProSitePatterns | 151 | 160 | 10 | - | ||
| MobiDBLite | 311 | 342 | 32 | - | – | |
| MobiDBLite | 311 | 331 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0727200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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