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LotjaGi1g1v0733000.1

Overview

Field Value
Gene ID LotjaGi1g1v0733000
Transcript ID LotjaGi1g1v0733000.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G36930.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7KDY8|G7KDY8_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi1g1v0733000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:130462414..130465938) extracted from Lotus japonicus Gifu genome v1.2.

AGCTGTAAGCTACTTTGTTTTAAGAAAGCATATAGTAATAATAACTCAATGAGCATCCAGCATTATTTCATATAAAAACC CCATAGTTTTTTAAGAACAGCACCATGTGACGCTTGTCATCCCAAGTCCCAGTTTGATTTGTTTAAGAAAACATGTAATA ATCTGTGTGAACGTCATAAAGTGATTTCAGCATAAGTTATTTGTTAATTATATACCTGCGACCCTGTTTCTGGGAGTCAG TTGCAGAGGTTGTCTTGCAATTGTTTGTGTTAATTCATCAGTGCTCAATGGCTAAAGAAGGAGTTGTTCTTCCATATTCA ACAGGTAGATGGGCATACGACGTGTTCCTGAATTTCAGAGGAGCGGATACTCGTGATGGATTTACAAGCGTTCTCTACAA ATCTCTGAAAGAAAGAGGAATCCGAACCTTCTTCGATGACGATGAGCTTTCAAGAGGGAAAGAGATCAAGTCCTCCCTCC TCAGAGTCATCGAAGAATCCATGATTGGCATAGTGATATTTTCACCAAACTACGCTTTCTCAGCTTATTGCTTGGATGAA CTTGTCCACATCTTAGATTGCTGCAAGGGTCACGATCGGTTGGTTTTGCCAGTGTTCGTGGATGTGGATCCTTCACATGT AAGGTATCAGGTAGGGACTTATGGTGATGCCATGGCCAAGCATGAAGACCACCACCGCGTTGACCAACCCAAACTGCAAA AATGGAGACAGGCTTTAGCTGATGCAGCTGATTTGTCTGGCTGGCATATCCAACAAGGGTATGTATATATTTTTTATTTC AATGATACATTTTTGTGGGTTGAGAGTTTTGATTCATTTATTTACACTTCACTGTTTTTCATTCAATTTTCAATTATTGT TTCTCTATTTAGCTCCTTTTTTATCAATTCACTTATTTTTTTTTATATCTATTTGTGGGTATGGGTGGAAATTAAATGAG GTTTCAACCAAACTTTTTCCTCTGTTTTGTAAACTACCATTTCAGAAATTTTGTATCATTCTATTTTCTTTCACATGACA TAGTCGTATGTATGTCATGTGAGATTAACACATGAGGGAATCCAAATCTGCACACAGATCAAATGCTCTACTAATTAAGA ACCAAATCGACCAAACTAATAACCAACTCACAACTAACTAAACGCCTAAGTAACAAACTAGCTCATTAAGAAAAGAAAAA ATGATTCAAATTAATTAGCAATCACAATTTCATTTTCTGTAATTTGACAGGTCTAAGTCTGAATTTACCTTTATTCGAAA GATTATTGGAGAGGTTTCCAGAAGAATCAATCGCAACCATCTGCATAATATTGGTAACCACCTAGTTGGACTGGAATCTC GGGTGCATGATGTAACAACACTTCTTGAGTTGGAGTCTGACCAGAAAACCATCATGGTAGGGATTTGTGGATTAGGTGGA ATAGGAAAAACAACACTTGCTCAAGCTGTATTTTGTTCGATTTCTGGTCAGTTTGAAGGCATATGTTTTCTTGCTGATGT TAGCCAGAAATCGCATGACCTTGGCCTAGTCAGACTGCAGGAGACACTCCTTTCTGATTTAGTTGATGAGAAGAACATCA AGTTTACAGATCCAAGGGAAATAATTCCGACAATAAAACACAGGCTCCGGCAAAAGAAAGTTCTTTTGATTCTTGATGAT GTTTGGGATATGGTAGAGTTGGAGTCATTAGCTGGAGATTGTGATTGGTTTGGTTCCGGTAGCAGAGTGATTATAACCTC AAGGAACACACATTTGCTTAATTCCCATGGTGTTGACAGACAATATAAACTCCAGACATTGAATGAAGAAGAAGCTTTTG AGTTATTTTGTTGGAAGGCCTTTGAAAATAAAGAAGCAAATCCAATTTATATGGAACTATCAAAAAGTGTAGCGAGTTAT TCCCTTGGAATTCCACTGGTTTTGGAATTGGTTGGTTCTGACTTGTTTGATAAGCCAATTGCTGAATGGGAATCTCTCTT GGACAAATACAAAAGATATGATCCAAGAGATATTCCAGGGCTCCTAATGATCAGCTACCAAAATTTGGATGATGATGTGA AAACAATCTTCCTTGACATAGCATGTTGCTTCAATGGTTACAAAGTGGAATATCTTACTGATTTGTTGTTAAATGGTCGT GGTTTCTCTCCAAAATACGCTTTACAAGTGTTGATTTCCAAATCATACATAAAGATAGAAGACGGTGTTGTTAGAATGCA TGACTTGGTGCAAGACATGGGTAGGGCATTTAATCACAGGGAATCACGTTCACAGCCTGGTAACAGCAAAAGATTATGGT TCTATCAAGATATTCTCAATGTTCTTAATAACAATATGGTACGCTCTATCGAACTGCATGGTTTTTCTCTGTTTGAATTC CCTTCAGTTTCCTATTTTGATGAATATATATCTCATGACATGGGTGACTATGGCTTTGAAGGGAGGTCCTGCTGTTGAAA TCATGAAGATTGACTTGCCTAAACATGAAGAAGTGATTTGGGATGGAAATGGTTTCAAGAATCTGGAAAACCTCAAAATT CTTGAAATTATAAATGCACGCTTTTCAGAAGTTCCCAAGATCTTCCCAGATGATTTGAGAGTGCTGAATTGGAAAGGATA CTTCAAGGGAGCAAACTACAAGAATCAACATAGTGGGAATACTTCTGGTTGTTGCAATATACTTTAGATAAACCATTGCT TATTTGCAAATGTATTTTTCTCTTTTCTTGTAATAGCAGAATTAACACTAGCTGTTACTTAAAATTACAACGACCCTCCT CAAGCTATGCTGTACCTGGAAAGTGCAAACCCCCCTGCACTTTATACTGCATGTCACTTTCCTAGTTTCTCTCTCTCTCT CTCTCTCACACACATATATATATATATATATATATATATATATATATATATATATATTTAATGGTGGATTCTACCATACC CCCAATGTATGATACAAGACTGACGCATTATGTCGTGTACCAATGGGGGATCGACACCTGGCACCGTATTTAAATATGTG TTTCAATTTTAAACATATACCGTAAAAAAAGAAAAAAGACATATTTATTATTCCTTATTATTATATCCCACTTGAGTTAA GGTTAGTGAACCCGTGTGGGCCCCATGTGGTTAACACATTTCCAGGCTTTGAATTTCTGAGAGGGAAATTGAAGTGGGTT GTCACTTTTGGAGGGAGCATAAACAAAGAGTGCACGGCGGTGAAGGTGACAACGGCGGCGAAGGGTTTGTTATCGGCGTT GAAGCCTCCACTCTAAGCAGCGAAGGCTTGTTGGACAGCTCCTGAAGCTATTTGAAGTGTTTGTTTGTGGGTTTCTTTCC GGATTCGACATTTAGGGTTCTAAGCTATTTTGTGTTGACGTAAGTCCTTCTCCTCTTTATTTAGTAATTGTGTGTGTCTC TTTCGATTTATTTGTTTTTCAAGGTTAGGTCTTTCTGAAATGGTGAATTTAGGTTGTGTTTGTTGTGCTGATTTAGTTGA GGTTG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0733000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTAAAGAAGGAGTTGTTCTTCCATATTCAACAGGTAGATGGGCATACGACGTGTTCCTGAATTTCAGAGGAGCGGA TACTCGTGATGGATTTACAAGCGTTCTCTACAAATCTCTGAAAGAAAGAGGAATCCGAACCTTCTTCGATGACGATGAGC TTTCAAGAGGGAAAGAGATCAAGTCCTCCCTCCTCAGAGTCATCGAAGAATCCATGATTGGCATAGTGATATTTTCACCA AACTACGCTTTCTCAGCTTATTGCTTGGATGAACTTGTCCACATCTTAGATTGCTGCAAGGGTCACGATCGGTTGGTTTT GCCAGTGTTCGTGGATGTGGATCCTTCACATGTAAGGTATCAGGTAGGGACTTATGGTGATGCCATGGCCAAGCATGAAG ACCACCACCGCGTTGACCAACCCAAACTGCAAAAATGGAGACAGGCTTTAGCTGATGCAGCTGATTTGTCTGGCTGGCAT ATCCAACAAGGGTCTAAGTCTGAATTTACCTTTATTCGAAAGATTATTGGAGAGGTTTCCAGAAGAATCAATCGCAACCA TCTGCATAATATTGGTAACCACCTAGTTGGACTGGAATCTCGGGTGCATGATGTAACAACACTTCTTGAGTTGGAGTCTG ACCAGAAAACCATCATGGTAGGGATTTGTGGATTAGGTGGAATAGGAAAAACAACACTTGCTCAAGCTGTATTTTGTTCG ATTTCTGGTCAGTTTGAAGGCATATGTTTTCTTGCTGATGTTAGCCAGAAATCGCATGACCTTGGCCTAGTCAGACTGCA GGAGACACTCCTTTCTGATTTAGTTGATGAGAAGAACATCAAGTTTACAGATCCAAGGGAAATAATTCCGACAATAAAAC ACAGGCTCCGGCAAAAGAAAGTTCTTTTGATTCTTGATGATGTTTGGGATATGGTAGAGTTGGAGTCATTAGCTGGAGAT TGTGATTGGTTTGGTTCCGGTAGCAGAGTGATTATAACCTCAAGGAACACACATTTGCTTAATTCCCATGGTGTTGACAG ACAATATAAACTCCAGACATTGAATGAAGAAGAAGCTTTTGAGTTATTTTGTTGGAAGGCCTTTGAAAATAAAGAAGCAA ATCCAATTTATATGGAACTATCAAAAAGTGTAGCGAGTTATTCCCTTGGAATTCCACTGGTTTTGGAATTGGTTGGTTCT GACTTGTTTGATAAGCCAATTGCTGAATGGGAATCTCTCTTGGACAAATACAAAAGATATGATCCAAGAGATATTCCAGG GCTCCTAATGATCAGCTACCAAAATTTGGATGATGATGTGAAAACAATCTTCCTTGACATAGCATGTTGCTTCAATGGTT ACAAAGTGGAATATCTTACTGATTTGTTGTTAAATGGTCGTGGTTTCTCTCCAAAATACGCTTTACAAGTGTTGATTTCC AAATCATACATAAAGATAGAAGACGGTGTTGTTAGAATGCATGACTTGGTGCAAGACATGGGTAGGGCATTTAATCACAG GGAATCACGTTCACAGCCTGGTAACAGCAAAAGATTATGGTTCTATCAAGATATTCTCAATGTTCTTAATAACAATATGG TACGCTCTATCGAACTGCATGGTTTTTCTCTGTTTGAATTCCCTTCAGTTTCCTATTTTGATGAATATATATCTCATGAC ATGGGTGACTATGGCTTTGAAGGGAGGTCCTGCTGTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0733000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAKEGVVLPYSTGRWAYDVFLNFRGADTRDGFTSVLYKSLKERGIRTFFDDDELSRGKEIKSSLLRVIEESMIGIVIFSP NYAFSAYCLDELVHILDCCKGHDRLVLPVFVDVDPSHVRYQVGTYGDAMAKHEDHHRVDQPKLQKWRQALADAADLSGWH IQQGSKSEFTFIRKIIGEVSRRINRNHLHNIGNHLVGLESRVHDVTTLLELESDQKTIMVGICGLGGIGKTTLAQAVFCS ISGQFEGICFLADVSQKSHDLGLVRLQETLLSDLVDEKNIKFTDPREIIPTIKHRLRQKKVLLILDDVWDMVELESLAGD CDWFGSGSRVIITSRNTHLLNSHGVDRQYKLQTLNEEEAFELFCWKAFENKEANPIYMELSKSVASYSLGIPLVLELVGS DLFDKPIAEWESLLDKYKRYDPRDIPGLLMISYQNLDDDVKTIFLDIACCFNGYKVEYLTDLLLNGRGFSPKYALQVLIS KSYIKIEDGVVRMHDLVQDMGRAFNHRESRSQPGNSKRLWFYQDILNVLNNNMVRSIELHGFSLFEFPSVSYFDEYISHD MGDYGFEGRSCC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.10140
10 183 174 9.3E-61
IPR035897
SUPERFAMILY
SSF52200
11 159 149 1.83E-40
IPR035897
PANTHER
PTHR11017
14 534 521 1.1E-187 –
PANTHER
PTHR11017:SF287
14 534 521 1.1E-187 –
ProSiteProfiles
PS50104
15 156 142 24.485
IPR000157
Pfam
PF01582
16 181 166 1.6E-43
IPR000157
SMART
SM00255
16 156 141 1.7E-37
IPR000157
SUPERFAMILY
SSF52540
181 447 267 3.65E-62
IPR027417
Gene3D
G3DSA:3.40.50.300
184 349 166 9.7E-33 –
Pfam
PF00931
202 418 217 4.2E-33
IPR002182
PRINTS
PR00364
219 234 16 2.9E-17 –
PRINTS
PR00364
295 309 15 2.9E-17 –
PRINTS
PR00364
388 402 15 2.9E-17 –
SUPERFAMILY
SSF46785
425 529 105 3.54E-11
IPR036390

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0007165
Biological process Signal transduction The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
Subterm of
Part of
GO:0043531
Molecular function ADP binding Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0733000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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