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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0740400 |
| Transcript ID | LotjaGi1g1v0740400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat cell cycle regulatory protein; TAIR: AT4G33270.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q9SZA4|CDC21_ARATH Cell division cycle 20.1, cofactor of APC complex; TrEMBL-Plants: tr|A5BP73|A5BP73_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0740400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131433617..131436066) extracted from Lotus japonicus Gifu genome v1.2.
CTAATATTGATGACAATCTTCTTCTTCTTCTTCTTCTTCTTCTCACATCCAATCTTCTCTGATTCTCTCTCGCGCGCGCG AAATCTCTCTCGATCTTCGAGACTGAGCCCACAACACAATCAATCATTCTACTTTATCATCTCTCTCATTCATTCACTGA TTTTCTTCATCATATCTTCTTTTTTCCATTGATTTTTCTCCGCATCTTCTTGTTTCGCAGGGAAAATTTCTCCGATCATG GACGCGGCGGCGGGACCGTGGACTTCTCCGATCAAATTCAAATCCCGATCCCTTTTCCCTCACAGGAAGTCTTCTCAGGA AAACGTAAACCCTTGAATTTCTTGTTGATTTTCTTTCCGATCAAACCCTTGATTTTACGAATTTCTTGTTGTTTTCTCAC TGATTCTTGGTGTTTTCTGGGAACAGTTGGATAGGTTTATTCCGAATAGGTCAGCCATGGACTTCAGTTACGCTCACTAC ATGCTCACGGAGGGAAGAAACAACAAGGAGGAGCCGGTGGTCACGTCGCCGTCCAAACAAGCTTACCGGAAAATGCTCGC CGAGGCTTTCAACATGAACCGGACGCGAATCTTGGCCTTCAAGAACAAGCCGCCTGAACTTGTTGAAGCCATACCCAAGG ATTTCTTCTCCCCTCCTCCTCCTCAATCCAAATCTTCCAAGCCCAGACACATTCCTCAGGTATTTTTGGCTTTGTGTGTG TGTGTTTGTGTTTGATTCAAAGCAAAATATTGAATGTTTGGGATTGCACTCTAACTGTTTGTGAAAATTCCTGTGTTGTT TTTTTCAGAGTTCTGAGAGGACACTGGATGCCCCTGATATTGCAGATGACTTCTACTTGAATTTGCTTGACTGGGGTAGC AGTAATGTGCTGTGCATTGCTCTTGGAAGCACTGTGTATCTCTGGAATGCTGCTGATAGCTCCACTGCAGAACTTGTCAC GGTGAATGAGGAAGAAGGTCCCATTACTAGTGTTAACTGGGCTCCTGATGGCCGACATTTAGCTGTTGGTTTGAACAATT CCATTGTCCAGTTGTGGGATTCTACTACTACTAGACTGGTAAATACTAAATGTCATGCTTCTCATTTGTTATCTTGTGTG TGAAACTGTTAATTATTGTAAAATTGAAACTACTGCTGATGAACTCTGATGGTTTTAACATGCTTCCTTTGTCAGCCTTT GTGTTAAACTGTTGATTGTTGTTAAATTGAAACTCCTGCTGATTCATTATTCATTATGATGTTTTTTTAACATGGTTTGA TTTGGTGGGTGCAGCTGAGAGTACTCAGGGGTGGACATCGAGCAAGAGTAGGATCACTGGCATGGAACAATCACATCCTG TCCACAGGAGGAATGGAGGGTAGGGTGGTTAACAATGATGTGAGAATAAGGTCTCACATTGTTGAAACCTACAGGGGACA CAACCAGGAGGTGTGTGGGCTCAAATGGTCTCCCTCAGGACAACAATTGGCGAGTGGAGGCAATGATAATCTTGTTCACA TATGGGACAGGTCAAGGGCCTCTTCCAACACGCCGACCCGCTGGCTACACCGGTTTGAGGAGCATGTAGCTGCTGTGAAG GCACTGGCCTGGTGTCCATTTCAGGGAAATCTTCTAGCTTCTGGTGGAGGAGGGAGTGACCAGTGCATCAAGTTTTGGAA CACACATACTGGTGCATGCCTGAACACTGTCAACACTGGCTCTCAGGTGTGTGCCCTTCTTTGGAGCAAGAGTGAGCGAG AGTTGCTTAGCTCGCACGGTTTCACCCAGAACCAGCTCACTCTCTGGAAATACCCTTCTATGCTGAAGATGGCAGAGCTC AATGGTCATACCTCCAGGGTGCTGTACATGGCTCAGAGTCCAGATGGGTGTACTGTGGCCTCTGCAGCAGCTGATGAGAC TCTTCGATTCTGGAATGTCTTTGGAACTCCAGAAGCAAGCAAACCATCCTCAAAGCCAAACCGCGAGCCTTTTGCTGATT TCAACCGTATCCGTTGAAGATTTGTGGAGTGCTGAAGATCATTGGTACAGGGGATTGATTCTAGGCTATATCTAAAATCG TTAATTTTCTTTCATTTTTTAATTGGCCCTATTCTTTACTGACTTTGTATACACAGTGCGCAAATTGGTCTGCGCAGTTT ATAGTTTAAACCCTATTCTTTACAGAATTGTATACACTGTGTGCAAATTGATTTGCGCAGTTTATAGTTTATATGCATTA TTGGATTTTTAAATCAACAAGTCACCTTATCTTGTAGAAGGCACTAACTTAGTTCTGATATTTGTTTTGTAACAACTCTC TCTTACATTGTATTTTCTTTTGTTGTAATCTCAAGTTCAGCCTAACTCATGTTAGCCTGGCTTAGCTTCTCCAATGCAAA ATACTTGTCCTTTGTTACCTGCAATTTTCAGTATCTTTATCCTATTATAG
CDS sequence (LotjaGi1g1v0740400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGCGGCGGCGGGACCGTGGACTTCTCCGATCAAATTCAAATCCCGATCCCTTTTCCCTCACAGGAAGTCTTCTCA GGAAAACTTGGATAGGTTTATTCCGAATAGGTCAGCCATGGACTTCAGTTACGCTCACTACATGCTCACGGAGGGAAGAA ACAACAAGGAGGAGCCGGTGGTCACGTCGCCGTCCAAACAAGCTTACCGGAAAATGCTCGCCGAGGCTTTCAACATGAAC CGGACGCGAATCTTGGCCTTCAAGAACAAGCCGCCTGAACTTGTTGAAGCCATACCCAAGGATTTCTTCTCCCCTCCTCC TCCTCAATCCAAATCTTCCAAGCCCAGACACATTCCTCAGAGTTCTGAGAGGACACTGGATGCCCCTGATATTGCAGATG ACTTCTACTTGAATTTGCTTGACTGGGGTAGCAGTAATGTGCTGTGCATTGCTCTTGGAAGCACTGTGTATCTCTGGAAT GCTGCTGATAGCTCCACTGCAGAACTTGTCACGGTGAATGAGGAAGAAGGTCCCATTACTAGTGTTAACTGGGCTCCTGA TGGCCGACATTTAGCTGTTGGTTTGAACAATTCCATTGTCCAGTTGTGGGATTCTACTACTACTAGACTGCTGAGAGTAC TCAGGGGTGGACATCGAGCAAGAGTAGGATCACTGGCATGGAACAATCACATCCTGTCCACAGGAGGAATGGAGGGTAGG GTGGTTAACAATGATGTGAGAATAAGGTCTCACATTGTTGAAACCTACAGGGGACACAACCAGGAGGTGTGTGGGCTCAA ATGGTCTCCCTCAGGACAACAATTGGCGAGTGGAGGCAATGATAATCTTGTTCACATATGGGACAGGTCAAGGGCCTCTT CCAACACGCCGACCCGCTGGCTACACCGGTTTGAGGAGCATGTAGCTGCTGTGAAGGCACTGGCCTGGTGTCCATTTCAG GGAAATCTTCTAGCTTCTGGTGGAGGAGGGAGTGACCAGTGCATCAAGTTTTGGAACACACATACTGGTGCATGCCTGAA CACTGTCAACACTGGCTCTCAGGTGTGTGCCCTTCTTTGGAGCAAGAGTGAGCGAGAGTTGCTTAGCTCGCACGGTTTCA CCCAGAACCAGCTCACTCTCTGGAAATACCCTTCTATGCTGAAGATGGCAGAGCTCAATGGTCATACCTCCAGGGTGCTG TACATGGCTCAGAGTCCAGATGGGTGTACTGTGGCCTCTGCAGCAGCTGATGAGACTCTTCGATTCTGGAATGTCTTTGG AACTCCAGAAGCAAGCAAACCATCCTCAAAGCCAAACCGCGAGCCTTTTGCTGATTTCAACCGTATCCGTTGA
Protein sequence (LotjaGi1g1v0740400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDAAAGPWTSPIKFKSRSLFPHRKSSQENLDRFIPNRSAMDFSYAHYMLTEGRNNKEEPVVTSPSKQAYRKMLAEAFNMN RTRILAFKNKPPELVEAIPKDFFSPPPPQSKSSKPRHIPQSSERTLDAPDIADDFYLNLLDWGSSNVLCIALGSTVYLWN AADSSTAELVTVNEEEGPITSVNWAPDGRHLAVGLNNSIVQLWDSTTTRLLRVLRGGHRARVGSLAWNNHILSTGGMEGR VVNNDVRIRSHIVETYRGHNQEVCGLKWSPSGQQLASGGNDNLVHIWDRSRASSNTPTRWLHRFEEHVAAVKALAWCPFQ GNLLASGGGGSDQCIKFWNTHTGACLNTVNTGSQVCALLWSKSERELLSSHGFTQNQLTLWKYPSMLKMAELNGHTSRVL YMAQSPDGCTVASAAADETLRFWNVFGTPEASKPSSKPNREPFADFNRIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 439 | 421 | 7.4E-246 | ||
| PANTHER | 19 | 439 | 421 | 7.4E-246 | – | |
| Gene3D | 80 | 427 | 348 | 1.1E-120 | ||
| MobiDBLite | 99 | 123 | 25 | - | – | |
| SUPERFAMILY | 133 | 425 | 293 | 7.33E-58 | ||
| ProSiteProfiles | 154 | 433 | 280 | 31.745 | ||
| CDD | 155 | 424 | 270 | 6.65441E-41 | – | |
| SMART | 166 | 204 | 39 | 5.4E-4 | ||
| Pfam | 171 | 229 | 59 | 4.4E-7 | ||
| ProSiteProfiles | 172 | 213 | 42 | 11.645 | ||
| SMART | 207 | 245 | 39 | 4.3 | ||
| SMART | 249 | 288 | 40 | 6.0E-10 | ||
| Pfam | 253 | 288 | 36 | 2.8E-8 | ||
| ProSiteProfiles | 256 | 288 | 33 | 15.254 | ||
| SMART | 297 | 339 | 43 | 0.0061 | ||
| Pfam | 301 | 339 | 39 | 0.022 | ||
| ProSitePatterns | 326 | 340 | 15 | - | ||
| SMART | 342 | 382 | 41 | 270.0 | ||
| SMART | 385 | 424 | 40 | 1.8E-5 | ||
| Pfam | 390 | 424 | 35 | 0.0044 | ||
| ProSiteProfiles | 392 | 425 | 34 | 12.814 | ||
| ProSitePatterns | 411 | 425 | 15 | - | ||
| MobiDBLite | 429 | 450 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Anaphase-promoting complex binding | Interacting selectively and non-covalently with an anaphase-promoting complex. A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis. | ||
| Molecular function | Ubiquitin-protein transferase activator activity | Increases the activity of a ubiquitin-protein transferase, an enzyme that catalyzes the covalent attachment of ubiquitin to lysine in a substrate protein. | ||
| Biological process | Positive regulation of ubiquitin protein ligase activity | Any process that activates or increases the frequency, rate or extent of ubiquitin protein ligase activity. |
Expression pattern of LotjaGi1g1v0740400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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