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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0741200 |
| Transcript ID | LotjaGi1g1v0741200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Exosome complex component; TAIR: AT3G60500.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q9M209|CER7_ARATH Exosome complex component RRP45B; TrEMBL-Plants: tr|G7IP72|G7IP72_MEDTR Exosome complex exonuclease RRP41; Found in the gene: LotjaGi1g1v0741200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131493135..131497380) extracted from Lotus japonicus Gifu genome v1.2.
GCTAAAACATGATATGATATAGAAGACAAATTGGGCCAATATAAAAGACAAAGCTGCACCGGCCCAAGTACTGGCTCAGC CCAAGCCTGGCCCATCATTTCTGTCTGTATGTTTGTGACCTAGTTCCTCTGCCTCGTCTTCTTCAATTTTGTTGTTTCAC TTCTTCACCCAAAAAAAAAAAAAAAACAACCCTCAAGCACTATCAGCTTCACAGTTCTCGCCGGAGCACTCGCCCCTCGC CGCGACCACGCCGCCATACAGAGAAGCATGGAGCAGAGGCTAGCTAACAGTTGGCGAATGACAGTTAACGAGAAGAAATT CATCGAAACCGCGCTGCTATCGGAGCTCCGAGTCGACGGTCGCGGCCCCTTGGAGTATCGCAGACTCACCATCAAGTTCG GGAAGGATGATGGCTCAGCCATGGTGCAATTGGGGGAAACACGCGTGATGAGTTTCGTCACTGCTCAGCTTGTTCAGCCT TACAGAGATAGACCCAATGAAGGCTCGCTTTCTATCTTCACTGAGTTCTCTCCCATGGCTGATCCTTCCTTCGAGCCTGG CCGTCCCGGAGAGTCTGCCGTTGAGTTAGGCCGCGTTATTGATCGTGGTTTGAGAGAAAGCAGAGCTGTTGACACTGAAT CGCTATGTGTTCTTTCTGGCCAGCTTGTTTGGGCTGTTCGGATTGATATCCATATACTGGACAATGCAGGGTGAGTCTCA GTTTTCAGCTCCGCTTAGTGTGTTTGAATTTTCGTTGAACTCAATGCTGATGTAAGTTGAACTTGCCGTTAGTTTGCTTT ATCTAGACTAAGGTTAATTATGATGATTTTGTGTATTAGAAATCTTGTTGATGCTGCAAATGTTGCTGCTTTGGCTTCTC TGTCGACATTCCGAAGGCCTGAATGTTCATTAGGGGGAGAAGATGGTCAGAAAGTTGTGGTGCATCCTCCTGAGGTTAGC TTTCATCAATTTAATAACACTGTTTTTATGCTTGTTTCCTATTTATCTTCCATGACTGTTTTGTATGAATTGAATCTCAG GTGCGCGATCCGCTCCCGTTGATTATACATCATCTTCCTATTGCAGTTACCTTTGGATTTTTCAGTGATGAATATCTTGT GGTACAGATTCTTAGATTTCTCTCTTAAACTAATGCATGATTTTCTTGAGGGTTGTTCGAATGTGAGGTGAGGTGAGGGT CCTTTCTGATTTTATATGTTGCTCTCTAGATTATGGATCCGACATACCAGGAAGAGTCTGTAATGACTGGACGTATGACT GCCACAGTTAATGCAAATGGTGATGTTTGTGCCATTCAAAAAGCTGGAGGACAGGGAGTGCTTCAGAAGCTTATCATGCA CTGCCTGAGACTTGCTCATGTTAAAGCTGGCGATATTACAACCAAGATAAAAGAGGCAGTGAGTTCTCTTTTTATGCTTT AGGTTTCTATAATCTTGCTTGCTTTTGATGCTTATGAAACTGAATAACACATTTAGTTAGTATCATCACATCATCCATCT TGTCTTAGGTGCTAAACTCCTATGGTATGAGATAAATCAGATAATGAAACAAGTGTACCTATTAATCTCGATTTAGGATT CTGCTTCTAAGACATGCTGTGCTGGTTGGCTTAGCTATAACTATAAGGACTGTGGTATACATGACATCTACTAGCTTTTG CATTGCAATAACTTACTTGTTTCAATATCTTACGTGTGAATTTTTTTCTAAAGGCCATTACAATAATTTTCCTGTTTGGA TTTTGTGTCTTAATTGTCATATCACTGTAGAAATATCCTTTGTTAATTCCTTTTGTGTTGATGTAGGTTGAAAAACACAA CACTGAAAGGGCACTACGCAAGATTAAACGCCATTCTTCTGTTTCCGTAGATGTATGTGGAACCACTGCCAGGTTAGGGG AGAAACAAAACCCATTAGATGGTGATAAAGATGGTAGCTGTTTAGACCAATTGAAGCTGAAAGATGAGGGGAATTTTATG GAATGTGAAGCCACACCATCAGGACATGTACAAAGTAGCCAGGGGGATGGAGTATCGAAGAATTTTACCGGTGGCCCATC TAGTTGGTATGTATCAGCTTTGCAAAGAACTAAAGCTTTCTTTGGACTGGTTTTTATCCATATTATAGTTTTTTCTAGTT CAATACTCCAGTCCATTTATTATGCATGCATAGAGTATTTATCATTATCTTGTGTACCAACGAGTACTCACATATGTGAA TGGTATAACCAATGAGTCTCCCTAATATGAACTACGTGTGATTTTGGTCCCCTTTCCTTTTTTTAGCTAATGAAGTCTAT CTACTTCACAGTTAAGCAAATTTAGTCTTTTTGTTAATTTTCATGTATCTGAAATCCCTAAATATTCATTTCCTGTTAAA ACATGTTGGGGTTTATGATGGATTGAGGATAGAAATAATTTTAGAAGTTCAAAATAAGAAATTTCGTGAAAATTTGAAGG ATTTTGTAGAATGTTGAGAGGGGGGAATGTTCAGGAATTTTTATTTTGGGAAAAATTTAATATTTTGATTAGTAAGTTTT GAATGAATAATGTCTTAAAAATGATTTTATACGAGGACATGTTTCTTAGAAAATAAGAATTTGTGAGTTAAGTAGAATTA AAATGATAGAGGGACTTGAAACAATGAAATTTTTTAGGGATTAAATTTGCTCAAAAAATTATTGGGGTCCAAATTCACTT ATCAGCTATAGTATAGAGATTGAAAGAACCATTAAACCATTTGGAAACCCACATGACACAAGGGTGGTAAAGCAACAGTC ATAGAAAGTATATCAAAATTAATAATTACAATTACGAGGTCAAGGTCCTTCTATTCTGAGTTTTGTCTTGCATTTTAAAT TCAATAAAATCACGTTTGGTATATTCCAACTATTGTTCCTTCTCTTCTTCAGGGATCCCTACTCGGAGTGTGTCAATTCA GATCTTCTAAAAGCTTCTCTAGCTTCACGTGGTAATAGGTTCTCTTTCATCTTTGATTATGATCTTGGTTGTTGTGTGGT TTTTTATTGATTCAGTGGCTCTACTTGCTTGCACTTGGTGTGATATTATCAAAATCCTGAACACTGACATCATTATAGTA CTCTAGCTTCTCATTGTCCTGGGATAAAATTGTCCAATTGGATGTTTTAGGTCTGTTTATGGTAGAATTCTGCATACACG AACAACATACTCACAAATCCTTCGTAAAACATTTTATTGGCTGAGAAGTGTGTCATCCATTGCTTTACACTGCCAAAATT TCTCAACTGCTCATTCATTTTTCTGAGGGGTTTGCGAGGTTTTTGTCTATGTGTGTGTACATAATTTCTGTTGATTGTGT TGTTGCTTTTAGTTAGACTTTCTTTTTAGATTTAACTATCCTTCTTGAATAATAAGTTAGTTTTTTTCTAATGAGAATTG AGAAGATAAGACTGAACTCACTCACTCATTAGAATTGTTATAAAAAAGCAGGACCATCAGGAAATGTTAAACAAAAGGAT TCAGGATCGGCACCAAAGCCGGAGGAGGCACCACAGGAAATCAAGAAAGATTCTTCACCAATTGACACAGCTCTAGCTGC TGAGCAGAACAATGAAGGTAAGACTCTAAAGGATGCCGTCAAGCCCAAGAACAGAAGAAAAAAAAGAGCACCTACCAATA GTGGAAATTAAGTAGTTAAACGGGTTGTTGTCAGAGGTATTACTACTGACCATGTATGTTATCTAAAGAGTGGAAATTAA GTAGTTAAACGGGTCATTGTCAGTTGAGGTATTGCAACTGACCATGTATGTTATCTAAAGAGTCTCTACTTGACCAAAAA AAGAAACTGTACTTTTTTTCTGGAATCCTTTTTATGTCGTAGACAGGATGCTGTAAAAATCTGAGGGACAATGAAGGAGT CTCATTAGTTTTTGCGTGGCAGAAAGTGGTACTTGACAATAGTGAAAATCATTATGAATTGTTTCTGTAATTCTTTCGGC CTTTAAAATAGTTCCACATTTTTTCCCTCATCACTCGAGTTGTCTTTTTAGCTGAATAGATGAAGACATTGGATTTGTTC AATATGGTATATGTATTCTGAATTTTCCTGCCCATAGTAAGAAGTGCTGTTTCAGGGAAAATGCCATTGAGTGTCTCATT TACATCGTATTAGGAACAACCAATAGTTATCGCTATGACATTCCTATGGTATATTACGGGAAAGCTTAGAGAATAGTTTC TCTTGA
CDS sequence (LotjaGi1g1v0741200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCAGAGGCTAGCTAACAGTTGGCGAATGACAGTTAACGAGAAGAAATTCATCGAAACCGCGCTGCTATCGGAGCT CCGAGTCGACGGTCGCGGCCCCTTGGAGTATCGCAGACTCACCATCAAGTTCGGGAAGGATGATGGCTCAGCCATGGTGC AATTGGGGGAAACACGCGTGATGAGTTTCGTCACTGCTCAGCTTGTTCAGCCTTACAGAGATAGACCCAATGAAGGCTCG CTTTCTATCTTCACTGAGTTCTCTCCCATGGCTGATCCTTCCTTCGAGCCTGGCCGTCCCGGAGAGTCTGCCGTTGAGTT AGGCCGCGTTATTGATCGTGGTTTGAGAGAAAGCAGAGCTGTTGACACTGAATCGCTATGTGTTCTTTCTGGCCAGCTTG TTTGGGCTGTTCGGATTGATATCCATATACTGGACAATGCAGGAAATCTTGTTGATGCTGCAAATGTTGCTGCTTTGGCT TCTCTGTCGACATTCCGAAGGCCTGAATGTTCATTAGGGGGAGAAGATGGTCAGAAAGTTGTGGTGCATCCTCCTGAGGT GCGCGATCCGCTCCCGTTGATTATACATCATCTTCCTATTGCAGTTACCTTTGGATTTTTCAGTGATGAATATCTTGTGA TTATGGATCCGACATACCAGGAAGAGTCTGTAATGACTGGACGTATGACTGCCACAGTTAATGCAAATGGTGATGTTTGT GCCATTCAAAAAGCTGGAGGACAGGGAGTGCTTCAGAAGCTTATCATGCACTGCCTGAGACTTGCTCATGTTAAAGCTGG CGATATTACAACCAAGATAAAAGAGGCAGTTGAAAAACACAACACTGAAAGGGCACTACGCAAGATTAAACGCCATTCTT CTGTTTCCGTAGATGTATGTGGAACCACTGCCAGGTTAGGGGAGAAACAAAACCCATTAGATGGTGATAAAGATGGTAGC TGTTTAGACCAATTGAAGCTGAAAGATGAGGGGAATTTTATGGAATGTGAAGCCACACCATCAGGACATGTACAAAGTAG CCAGGGGGATGGAGTATCGAAGAATTTTACCGGTGGCCCATCTAGTTGGGATCCCTACTCGGAGTGTGTCAATTCAGATC TTCTAAAAGCTTCTCTAGCTTCACGTGGACCATCAGGAAATGTTAAACAAAAGGATTCAGGATCGGCACCAAAGCCGGAG GAGGCACCACAGGAAATCAAGAAAGATTCTTCACCAATTGACACAGCTCTAGCTGCTGAGCAGAACAATGAAGGTAAGAC TCTAAAGGATGCCGTCAAGCCCAAGAACAGAAGAAAAAAAAGAGCACCTACCAATAGTGGAAATTAA
Protein sequence (LotjaGi1g1v0741200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEQRLANSWRMTVNEKKFIETALLSELRVDGRGPLEYRRLTIKFGKDDGSAMVQLGETRVMSFVTAQLVQPYRDRPNEGS LSIFTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRAVDTESLCVLSGQLVWAVRIDIHILDNAGNLVDAANVAALA SLSTFRRPECSLGGEDGQKVVVHPPEVRDPLPLIIHHLPIAVTFGFFSDEYLVIMDPTYQEESVMTGRMTATVNANGDVC AIQKAGGQGVLQKLIMHCLRLAHVKAGDITTKIKEAVEKHNTERALRKIKRHSSVSVDVCGTTARLGEKQNPLDGDKDGS CLDQLKLKDEGNFMECEATPSGHVQSSQGDGVSKNFTGGPSSWDPYSECVNSDLLKASLASRGPSGNVKQKDSGSAPKPE EAPQEIKKDSSPIDTALAAEQNNEGKTLKDAVKPKNRRKKRAPTNSGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 325 | 323 | 3.4E-178 | – | |
| PANTHER | 3 | 325 | 323 | 3.4E-178 | – | |
| Gene3D | 7 | 296 | 290 | 1.0E-94 | ||
| SUPERFAMILY | 9 | 223 | 215 | 7.09E-52 | ||
| CDD | 11 | 270 | 260 | 3.64808E-141 | ||
| Pfam | 36 | 168 | 133 | 2.0E-21 | ||
| SUPERFAMILY | 193 | 292 | 100 | 3.65E-28 | ||
| Pfam | 197 | 263 | 67 | 1.6E-14 | ||
| MobiDBLite | 336 | 359 | 24 | - | – | |
| MobiDBLite | 339 | 359 | 21 | - | – | |
| MobiDBLite | 379 | 448 | 70 | - | – | |
| MobiDBLite | 394 | 408 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Exosome (RNase complex) | A ribonuclease complex that has 3-prime to 5-prime exoribonuclease activity and possibly endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi1g1v0741200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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