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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0742700 |
| Transcript ID | LotjaGi1g1v0742700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic translation initiation factor 3 subunit C; TAIR: AT3G56150.1 eukaryotic translation initiation factor 3C; Swiss-Prot: sp|Q9XHM1|EIF3C_MEDTR Eukaryotic translation initiation factor 3 subunit C; TrEMBL-Plants: tr|A0A0L9U9H6|A0A0L9U9H6_PHAAN Eukaryotic translation initiation factor 3 subunit C; Found in the gene: LotjaGi1g1v0742700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131631878..131636875) extracted from Lotus japonicus Gifu genome v1.2.
GTGTAGAGCTCCAGTGCACCATTCACAGTCTTGAATGATCCTCCTCGAATGATAGAGGTTCTTCTAGCCAGTGATATGTC TGTTTCGTAGTTTTTTTTTCTTCTCCATAAAAAAAAAAAGAAATATTTTTTATTGAAGATTGAGTAAGAAATAAAAAAAA AAAGCAAAAACCCCATTTGGATTGGCACATGTCTCAAGTTGGGTTTGGCCCTTTGAATTGAAAGGATAAACGGCCCAAAT ATTTCAAAACCCTAATCTAAAAAAAACCACAATCTAGTGAAACAACCAACAGCCGCTGTTTCTGCTTCATCTTCGTCTTT CCCAGATTCATCGATTGGTACTATCAGAGCTGCCACCATCTTCAATCTAAGACAACTTACAGCGACCGAATCCTAGTTTC TGCGAAAACGGTACGCCTAAATCTCGTGCTTTTACGTTTTTCATGACAATTGTTTTTTCTTTTTCACTCTTTACTAGGTT GTTATGCTTTCATGTTTTGGAACCATGGTACAATTGTGATCTGATGTTTTTTCATCGACTGCAGATTATTGACACTTTTC ACAACATTTGACAAACGATGGCTTCAAGATTCTGGACCCAGGTATTTGGAATATTGTTAATTTCTATTACTCACTCGGTA CTCACTCGGTGTGTTGAAATTTGAAGGATTTGTTATTAATTTTACTGTTATTGTTGTTTTTGAATGACAGGGCGGTAGTG ATTCCGAGGAGGAGGAGAGTGATTATGATGAGGAGGTTGAAACTGTGGCCGGTGAAACTGCTGGTCAAGAGGTTCAAAGC AGGTATTTGAAAGAGAATGAAAGTGACAGTGATGACTCTGATGGCCAGAAGCGTGTCGTCAGGTCGGCCAAAGATAAGCG ATTTGAGGAGATGGCGGCCACTGTCGACCAAATGAAGAATGCCATGAAGATCAATGACTGGGTCAGCCTGCAAGAGAGCT TTGACAAGATCAACAAGCAGCTTGAGAAGGTTATGTGCGTCACTGAGTCTGAAAAGGTGCCCAAGCTTTACATCAAGGCA CTTGTGATGCTGGAGGATTTCCTTGCTCAGGCTTTGGCGAATAAGGATGCTAAGAAGAAGATGAGTAGCAGCAATGCCAA GGCGCTGAACTCGATGAAGCAGAAATTGAAGAAGAATAATAAGCAGTATGAGGAAATGATTACTAAGCAAAGGGAGAGTC CGGAGAGTGAGGAGGAAAAAGAGGAAGAGGAGTCTGAGGATGAATATGAAAGTGATGGTGAGATTATTGAGCCCGAGCAG CTTAGGAAAAGGGAGCCACAGTCGGATTCAGAAGCTTCTCAATATGATGATGAGAAGCAAGATGATGGCGACGGACCCTG GGATCAAAAGCTTAGCAAGAAAGACAGGCTTCTGGATAGACAGTTCATGAAAGACCCTAGTGAGATCACCTGGGACACTG TTAACAAGAAGTTCAAAGAGGTTGTGGCGGCTAGGGGCAGGAAGGGAACTGGGAGGTTTGAACAGGTTGAGCAGCTTACC TTCTTAACAAAAGTTGCGAAAACACCTGCACAGAAGCTGGAAATTCTTTTCAGTGTGGTCTCTGCTCAGTTTGATGTTAA TCCAGGCCTCAATGGGCATATGCCCATAAATGTGTGGAAGAAATGTGTTCACAATATGCTGATCATTCTGGATGTTCTAG TACAGTATCCAAACATAATGGTTGATGATTCAGTGGAGCTAGATGAGGCTGAAACTCAGAAAGGGTCTGACTATGATGGG CCTATTCGGGTTTGGGGTAACTTAGTTGCTTTCCTAGAAAGAATAGATGCCGAGTTTTTCAAGAGCCTGCAATGCATAGA TCCTCATACGCGTGAGTATGTTGAGAGACTCAGGGATGAACCCTTGTTTTTGGTTCTTGCTCAGAATGTCCAGGAGTATC TTGAAAGGACTGGCGATTTCAAAGCTGCTTCTAAGGTGGCCTTGAGGAGGGTTGAACTCGTTTACTACAAACCACAAGGG GTTTATGATGCTATGAGGAAATTGGTTGAGCTGACAGAAGAGGGAGATAATGGAGGGGAGACTGAGGAGTCAAAAGGTTT TGAGGAAACAAGAATTCCTAGTGCATTTGTTGCTACTCCAGAGCTTGTGGCCCGGAAACCCACTTTTCATGAGGATAGCA GGTCTCTAATGGATGCATTAGTATCTGTGATATACAAATACGGAGAGGAGCGCACTAAAGCACGTGCAATGCTTTGTGAT ATATATCACCATGCTCTTCGTGATGAGTTCTCAATAGCCCGTGATCTACTGCTTATGAGTCATTTACAGGATAATGTTCA GCATATGGACATTTCAACGCAGATTCTTTTTAACAGAGCTATGTCACAATTAGGTCTATGTGCTTTTCGGGTTGGTCTGA TTTCCGAAGCACATGGCTGCTTATCTGAACTTTATTCTGGTGGGAGGGTGAAAGAGTTGCTTGCGCAAGGCGTGTCACAA AGTCGTTATCATGAGAAAACCCCTGAACAGGTATTGTTCCCCCACCCCCACACTAAAAATGTGTTTATAGTATATGATGT CTAAATGAAAACTGACCATGCATTGCATTTGACAATAAAATGATCTCAGTCTATGATGATAATTGTTCATGTGCACTATA ATCAACACTGAATAGGTAAACACTTTACCCAATAGAAAATGATGGGATTTCAAGAATCATTGATGATTGTTTGTTTAGAG GAACTGGGCTAGCATTTCTTTGATCCATTCTCTTTGGGATTCTGATGCTTTTCTGCTCATGACAAAGGGCAGATTTTATT CCCTCCAGTTCTGCAATTGTCATGTCTCTACACAAACATGCTAGTGTATTTTTAATAGTTCAAAGTTATTAGTTATCTGT TCAGTCTTATAAAATCAATTTTGAGGCATGGTAAATTTCCCAATGTATTTTTTAATGTTGTGAGATATAAAGCTATAAGA TTGGGTCATGTGATTCCTCTGTGAAGTAGTATTTGTAAGTTTTTTTGAATTTCTTGCTTTTTCTTGGATCTCATTCGTGG CTTGAGGTTCTATCAGTTGTAAAATAAGTGAGGCTTTTGGGTTATCCAATCCATATTTCTTACCTGCATATTGAAGGGAG TTGAGGGAGATACTCATGAACAGGGAACCTAATAGCTAGGCCATTTATAATTTTTGAGGTTGACTCTATTGTATCAAGCT ATCACCACTAAAGAAGTGTGGTTGATTCCCTTGCATAATGGTCATTTATTGCCTGTGTGCTTATGCATGTGTTACACTTG TAATGTTAAATGTTGAACTAGTTACACTATATCTAGCTGTTGTATTTGTTGTGTTTCATTTAGCACTTGAAACATTAAAA ATAATATCATCAATACCTTTTACTTCAGCGATTATATTTGCCTTGCTAAATTATCATAATTTGTATCAAATTCAGTCTTC GTTAACTTGTAACCTTGCTAATGTCATGTTGTCTTTCTTAGCTTGTATGATAAATGATTTGGAACTTTCCAGTTATTTTT TTTTCTTTTTCTACATGAAAGCTAACCATTTCTTAATCCTCTTTCAGGAGAGGTTGGAAAGAAGACGTCAAATGCCATAT CATATGCATATAAATCTCGAGCTTTTGGAGGCAGTTCATCTTATATCTGCTATGCTTCTAGAAGTTCCCAATATGGCAGC CAATGTTCATGATGCAAAGCGCAAGGTCATCAGTAAGACATTTCGTCGCCTGCTTGAGGTCAATGATAAGCAAACCTTTG TCGGTCCACCTGAGAATGTAAGAGATCACGTCATGGCTGCCACAAGGGTTCTTAGTAAAGGAGACTACAACAAGGCTTTT GAAATTATTGTCTCTCTTGATGTCTGGAAATTTGTGAAAAATCGAGACACCGTGCTTGAAATGCTAAAGGACAAAATCAA GGAGGAGGCACTCAGGACTTATCTGTTCACCTTCTCCTCATCATATGATTCTTTGAGTGTGGACCAACTCACCAAAATTT TCGACCTCTCTGTTCCCCGAATTCATAGCATTGTCAGTAAGATGATGGTCAACGAGGAGCTTCATGCAAGCTGGGACCAG CCATCTGGGTGTATTGTTTTCCAAAATGTCGAGCTCTCTAGGTTGCAGGCATTGACGTTCCAATTGACTGAGAAATTGTC TATCTTTGCAGAGAGTAACGAAAGAGCTGCAGAGGCAAGGATTGGTGGTGGTGGATTGGATCTGCCTCCAAGGCGGAGAG ATGGCCAGGACTATGCTGCTGCTGCAGCTGGTGGAGGTGGTGGAGCAGGTGGAAGGTGGCAAGATTTGTCCCTTTCTCAG CCTAGGCAAGGCAGTGGGCGTGCAGGTTATGGTAGTGGTGGTGGAAGGCCATTTGCATTCAATCAGGCAGCAGGTGGCTA TTCAAGGGATCGAACGGGACGAGGAGGCGGTGGTGGGGGTGGTTATCAGAGTCAATATGGAGGTTCAGGGAGGGCTCATC AGGGAGGTTCAGCATTGAGGGGACACCATGGCGATGGATCTTCTCGCATGGTTAGCCTCAAGGGAGCTCGTGCTTAAAGA AGTTTATTTGAGAAAACTCATGGTATAAGCTTCTAGTATTTGATAAGTTATTTGTATGAGTATTGAGAATTTGACTAAAT GCACTAGGACATTTTGGTTCTCATTTTTGTACTGTTTTATTGAACTTCTTCATCTAAAGTTGCAATGATGAAGTTATGAG TTTTTATTTATATGGGATCTTAATTTCATCTATCCCTTAACTTTTGCCATGGTTTCTTCTGTGTTGGCTTCTTAGGATTG TACTTTAGGCCTTAGGGGAGAAGCAAGAACTTCATAAAGATAGTTCTTGTTTACTTTAGGCCGTAGGGGGGGGGGGGGGG TAAAGTGATTTATAACTTCAAAACATAATGGTTGAGATTTTACTAAACAATAACTTTCTTCATGAAGTTCTCTTTGCATT GTTGAGCAATGAGTACCATTTGCAGCATTAAGGACCCG
CDS sequence (LotjaGi1g1v0742700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCAAGATTCTGGACCCAGGGCGGTAGTGATTCCGAGGAGGAGGAGAGTGATTATGATGAGGAGGTTGAAACTGT GGCCGGTGAAACTGCTGGTCAAGAGGTTCAAAGCAGGTATTTGAAAGAGAATGAAAGTGACAGTGATGACTCTGATGGCC AGAAGCGTGTCGTCAGGTCGGCCAAAGATAAGCGATTTGAGGAGATGGCGGCCACTGTCGACCAAATGAAGAATGCCATG AAGATCAATGACTGGGTCAGCCTGCAAGAGAGCTTTGACAAGATCAACAAGCAGCTTGAGAAGGTTATGTGCGTCACTGA GTCTGAAAAGGTGCCCAAGCTTTACATCAAGGCACTTGTGATGCTGGAGGATTTCCTTGCTCAGGCTTTGGCGAATAAGG ATGCTAAGAAGAAGATGAGTAGCAGCAATGCCAAGGCGCTGAACTCGATGAAGCAGAAATTGAAGAAGAATAATAAGCAG TATGAGGAAATGATTACTAAGCAAAGGGAGAGTCCGGAGAGTGAGGAGGAAAAAGAGGAAGAGGAGTCTGAGGATGAATA TGAAAGTGATGGTGAGATTATTGAGCCCGAGCAGCTTAGGAAAAGGGAGCCACAGTCGGATTCAGAAGCTTCTCAATATG ATGATGAGAAGCAAGATGATGGCGACGGACCCTGGGATCAAAAGCTTAGCAAGAAAGACAGGCTTCTGGATAGACAGTTC ATGAAAGACCCTAGTGAGATCACCTGGGACACTGTTAACAAGAAGTTCAAAGAGGTTGTGGCGGCTAGGGGCAGGAAGGG AACTGGGAGGTTTGAACAGGTTGAGCAGCTTACCTTCTTAACAAAAGTTGCGAAAACACCTGCACAGAAGCTGGAAATTC TTTTCAGTGTGGTCTCTGCTCAGTTTGATGTTAATCCAGGCCTCAATGGGCATATGCCCATAAATGTGTGGAAGAAATGT GTTCACAATATGCTGATCATTCTGGATGTTCTAGTACAGTATCCAAACATAATGGTTGATGATTCAGTGGAGCTAGATGA GGCTGAAACTCAGAAAGGGTCTGACTATGATGGGCCTATTCGGGTTTGGGGTAACTTAGTTGCTTTCCTAGAAAGAATAG ATGCCGAGTTTTTCAAGAGCCTGCAATGCATAGATCCTCATACGCGTGAGTATGTTGAGAGACTCAGGGATGAACCCTTG TTTTTGGTTCTTGCTCAGAATGTCCAGGAGTATCTTGAAAGGACTGGCGATTTCAAAGCTGCTTCTAAGGTGGCCTTGAG GAGGGTTGAACTCGTTTACTACAAACCACAAGGGGTTTATGATGCTATGAGGAAATTGGTTGAGCTGACAGAAGAGGGAG ATAATGGAGGGGAGACTGAGGAGTCAAAAGGTTTTGAGGAAACAAGAATTCCTAGTGCATTTGTTGCTACTCCAGAGCTT GTGGCCCGGAAACCCACTTTTCATGAGGATAGCAGGTCTCTAATGGATGCATTAGTATCTGTGATATACAAATACGGAGA GGAGCGCACTAAAGCACGTGCAATGCTTTGTGATATATATCACCATGCTCTTCGTGATGAGTTCTCAATAGCCCGTGATC TACTGCTTATGAGTCATTTACAGGATAATGTTCAGCATATGGACATTTCAACGCAGATTCTTTTTAACAGAGCTATGTCA CAATTAGGTCTATGTGCTTTTCGGGTTGGTCTGATTTCCGAAGCACATGGCTGCTTATCTGAACTTTATTCTGGTGGGAG GGTGAAAGAGTTGCTTGCGCAAGGCGTGTCACAAAGTCGTTATCATGAGAAAACCCCTGAACAGGAGAGGTTGGAAAGAA GACGTCAAATGCCATATCATATGCATATAAATCTCGAGCTTTTGGAGGCAGTTCATCTTATATCTGCTATGCTTCTAGAA GTTCCCAATATGGCAGCCAATGTTCATGATGCAAAGCGCAAGGTCATCAGTAAGACATTTCGTCGCCTGCTTGAGGTCAA TGATAAGCAAACCTTTGTCGGTCCACCTGAGAATGTAAGAGATCACGTCATGGCTGCCACAAGGGTTCTTAGTAAAGGAG ACTACAACAAGGCTTTTGAAATTATTGTCTCTCTTGATGTCTGGAAATTTGTGAAAAATCGAGACACCGTGCTTGAAATG CTAAAGGACAAAATCAAGGAGGAGGCACTCAGGACTTATCTGTTCACCTTCTCCTCATCATATGATTCTTTGAGTGTGGA CCAACTCACCAAAATTTTCGACCTCTCTGTTCCCCGAATTCATAGCATTGTCAGTAAGATGATGGTCAACGAGGAGCTTC ATGCAAGCTGGGACCAGCCATCTGGGTGTATTGTTTTCCAAAATGTCGAGCTCTCTAGGTTGCAGGCATTGACGTTCCAA TTGACTGAGAAATTGTCTATCTTTGCAGAGAGTAACGAAAGAGCTGCAGAGGCAAGGATTGGTGGTGGTGGATTGGATCT GCCTCCAAGGCGGAGAGATGGCCAGGACTATGCTGCTGCTGCAGCTGGTGGAGGTGGTGGAGCAGGTGGAAGGTGGCAAG ATTTGTCCCTTTCTCAGCCTAGGCAAGGCAGTGGGCGTGCAGGTTATGGTAGTGGTGGTGGAAGGCCATTTGCATTCAAT CAGGCAGCAGGTGGCTATTCAAGGGATCGAACGGGACGAGGAGGCGGTGGTGGGGGTGGTTATCAGAGTCAATATGGAGG TTCAGGGAGGGCTCATCAGGGAGGTTCAGCATTGAGGGGACACCATGGCGATGGATCTTCTCGCATGGTTAGCCTCAAGG GAGCTCGTGCTTAA
Protein sequence (LotjaGi1g1v0742700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASRFWTQGGSDSEEEESDYDEEVETVAGETAGQEVQSRYLKENESDSDDSDGQKRVVRSAKDKRFEEMAATVDQMKNAM KINDWVSLQESFDKINKQLEKVMCVTESEKVPKLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQ YEEMITKQRESPESEEEKEEEESEDEYESDGEIIEPEQLRKREPQSDSEASQYDDEKQDDGDGPWDQKLSKKDRLLDRQF MKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGHMPINVWKKC VHNMLIILDVLVQYPNIMVDDSVELDEAETQKGSDYDGPIRVWGNLVAFLERIDAEFFKSLQCIDPHTREYVERLRDEPL FLVLAQNVQEYLERTGDFKAASKVALRRVELVYYKPQGVYDAMRKLVELTEEGDNGGETEESKGFEETRIPSAFVATPEL VARKPTFHEDSRSLMDALVSVIYKYGEERTKARAMLCDIYHHALRDEFSIARDLLLMSHLQDNVQHMDISTQILFNRAMS QLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLISAMLLE VPNMAANVHDAKRKVISKTFRRLLEVNDKQTFVGPPENVRDHVMAATRVLSKGDYNKAFEIIVSLDVWKFVKNRDTVLEM LKDKIKEEALRTYLFTFSSSYDSLSVDQLTKIFDLSVPRIHSIVSKMMVNEELHASWDQPSGCIVFQNVELSRLQALTFQ LTEKLSIFAESNERAAEARIGGGGLDLPPRRRDGQDYAAAAAGGGGGAGGRWQDLSLSQPRQGSGRAGYGSGGGRPFAFN QAAGGYSRDRTGRGGGGGGGYQSQYGGSGRAHQGGSALRGHHGDGSSRMVSLKGARA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 932 | 932 | 0.0 | ||
| MobiDBLite | 1 | 62 | 62 | - | – | |
| PANTHER | 1 | 932 | 932 | 0.0 | – | |
| Hamap | 2 | 868 | 867 | 46.707 | ||
| MobiDBLite | 12 | 28 | 17 | - | – | |
| MobiDBLite | 40 | 62 | 23 | - | – | |
| Pfam | 42 | 651 | 610 | 1.6E-242 | ||
| MobiDBLite | 134 | 231 | 98 | - | – | |
| MobiDBLite | 135 | 154 | 20 | - | – | |
| Coils | 144 | 171 | 28 | - | – | |
| MobiDBLite | 155 | 174 | 20 | - | – | |
| MobiDBLite | 175 | 192 | 18 | - | – | |
| MobiDBLite | 193 | 231 | 39 | - | – | |
| ProSiteProfiles | 619 | 791 | 173 | 24.937 | ||
| Pfam | 659 | 787 | 129 | 3.5E-17 | ||
| SUPERFAMILY | 715 | 789 | 75 | 4.62E-12 | ||
| SMART | 720 | 806 | 87 | 1.7E-18 | ||
| SMART | 720 | 806 | 87 | 1.7E-18 | – | |
| Gene3D | 723 | 794 | 72 | 2.5E-5 | ||
| MobiDBLite | 820 | 937 | 118 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Cellular component | Eukaryotic translation initiation factor 3 complex | A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs. | ||
| Biological process | Translational initiation | The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. | ||
| Molecular function | Translation initiation factor binding | Interacting selectively and non-covalently with a translation initiation factor, any polypeptide factor involved in the initiation of ribosome-mediated translation. |
Expression pattern of LotjaGi1g1v0742700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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