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LotjaGi1g1v0743500.4

Overview

Field Value
Gene ID LotjaGi1g1v0743500
Transcript ID LotjaGi1g1v0743500.4
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description Carbon catabolite repressor 4-like protein; TAIR: AT3G58560.1 DNAse I-like superfamily protein; Swiss-Prot: sp|Q8W0Z9|CCR4A_ARATH Carbon catabolite repressor protein 4 homolog 1; TrEMBL-Plants: tr|I1JQF1|I1JQF1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0743500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:131707283..131712481) extracted from Lotus japonicus Gifu genome v1.2.

ATGCTGAGCGTGCTGCGTGTGCACCTTCCCTCTGACATTCCTATTGTTGGCTGTGAGCTCACGCCTTACGTGCTCCTCCG CCGGCCTGACAAGACTGTTACCACCGATGATGCTCTCGAAACTGCCCCTCTAGACGGCCATTTCTTGCGCTACAAGTGGT GCGTGCTGTTCCATTTACTCCCTCTTCCTATTTGAATTTTGAATTTTGTTTGCGAATGTTGAAAATGGTTCCTGCCTATC ATTTTTTTATCGTTGTGCATAATGGGTATTTAAGCTTCAATATGTAGTTCTTGGGAGTTAATCAGTTATGCTAGTTTGTT ACTATTTGAAAATTGGAAGAGTATGAAGTGAAGTGTAAATGCTCATATGTTTAGTTTTGGTTTAGTAGAAGGCATAATAT AGTTTATCCCATAGTTATCGATAGCGCGCGATAACGGCGCTTCGCGCCAAAATCCCGCTATTCCCGGCCATCCCTTGTGC CATCCCTTGTATGGGATTTCATTTTTGGGGGTCATCCGCGACATGCCGCAATCCGCAATTGACTACTATGGTTTATCCAC CATGTTAGCTTATTACTTTTTTCTTCACTCCTGTGGCTAATGCATTTGTATCAAATAATCCAAATAGCAACACTTGTTTC ATTCCTCTTTCCTTGATGTTAATTTTGTTTGCGGTGCTAAAAAAATTTAAGGATAGTGAAAGCTCGTGTAACACGTTGTG AATTGACTAAAGTAATTGATTTTTTTAAGTGCTTAGAGGATGCCGTTGCAGTGTTTTATTAAGGAAAAAGTATCTCTTGA TTGTCTAATGTCTGGTGATGATCACTAGGCGACAAAGGATTATAGAATGTGGATTAATACTTGCACATTGTATAATTTGT TTCCTTCTACTTTACTTTTATTTGTAAATTAATTTGAATATTCATTATCATCAATTCTTGTGATAATTCTAGTGCTGGAC TTCATTATGAACTGATTTATTTCTTGTTGATAACTTTATCCTCGCATTCAAGTCACAGTCTTCTCCTTAGTGGTTCCGAC CTGCAGAATTTTTAATTCACTTATATGGAAATCCCAATTTGTAATGTTATAACCAGTGTTAGCGGATTTTTGGCTAATCG CGACGCCGCTATTGCCCACTATAGCCCGCTATTCGCCGCTAAATAGCGGCCGAATTAGCGGATTTTTGGCTCACCGCGAT GGTCCGCGTTCGCGATTTGACAACACTGGTTATAACATATTCTCAGTTCTGAATAAATCACATGACATTTAAATTTTGGC TATAGACTTCAACTGCAGGGTGTGGAATTTATATTTTCTTTCACATATGTCTTTATGGTGTGACGATTGTATATATAAAA TATGTGAGATTAGTCATTAGTTCACCTGAAGTTCATGAGTGTTAGTTAAAATAACATATAGATTCCATCAATTCCAAAAC AAGATTAGCAATCCTAGATTTTCTGTTAGCGATGGGACGTCATCTCGATTGGCGTCTTGTGCTGATCATAAGAATCTTCA ATACTCTGAAGTATCTAGTCCAGTTATTAATGTTAGTGGAATTTTTTATGGGATATGTTTTGAATGTTATCAGCTTTTGT CGTTTGTGTAATTTAGACATTGATGGAATTATTGAAGATTATGCCCTTATGGATATTTGGACCAATGTTGCGAGAATTTC CTTAGTATCACAAAATTGATTGCTTAAACAGTTGCTTGCGATTATTTTATTATGTTAAATACCAATTTGATCCCAAATAT ACTGCCTTAAATCTGATTTCCCTATTCATCTGATCAAAAATTTAGAACTTTATGTATTTACTATTTGACACAATCATTGG GTCCCCCTTTTTGTCAGGTATCGTGTACAAAGTGATAAAAAGGTTGCGGTTTGTAGTGTACATCCATCCGAGCAGGCCAC ACTGCAGTGCCTAGGTTGTGTTAAGGCTAAAATACCTGTTTCCAAAAGTTACCATTGCACTCCAAAGTGTTTTTCAGATG CATGGCAGCATCATCGTGTTTTGCATGACCGTGCTGCTAGTGCAGTTAATGAAAATGGAAATGAGGAAGAGGAAGTATTT GGGCGATTTAATAATGCTGGGTCTGGGTCAATAAATACCAGCTTATCTGCCTCTGCATCAAGTGGTAGCTTGACAAATGG GTCAGCACCTCTGTATCCAGCAGCTGTTACACAACGAAGTGGTGGTGAAACTTGGTTTGAAGTTGGACGGTCTAAGACAT ATACCCCAACAGCTGATGACATCGGTCATGTCCTTAAATTTGAGTGTGTTGTAGTTGATGCAGAGACAAAACTTCCTGTG GGACATGCAAACACTATACTAACTTCTCGTGTTATTCCTGCTCCCTCTCCTAGTCCACGCCGACTGATACCTGTTGACGG GATGGGGAATGTAGATGCAGATGGGCGTGTATCATCTTCGGGAACTTTTACTGTTTTGTCATACAATATATTGTCTGATT CATATGCTTCAAGTGATCTATACAATTACTGCCCTTCATGGGCTCTTTCTTGGCCATATCGGAGGCAAAATTTGTTGCGC GAAATAGTTGGTTACCGTGCTGATATCATTTGTCTTCAGGAGGTACGGTGCATAAATATGTCTTTTGGCTTTGGGTTTTG TTGTGAAGAAAGTTAATAACTGTTATACAACTCATCTCATTTTCAAAGTTTCTTTAGACTAGTGTTGAATAAGAATTCTA TTTCACTGTCCTAAAGTCTTACTTAATCTTCAATAGCAGATGGTTTTTGTAAAAGCTTGATTATGGACCCGGGGCGCAAA GTAATGCTGCCACTGGTAGCTCATTCTAATTTTAATATTTTATAACTTGGATGGCTATCAGTTGTTAATGAACTTAAATA AACGATACCTTAATTTCTATGTTTTTATGTTGGTATTTTTCGAGGGATGTGGTATTGTGGTATCATGGTCCAGTGTATCC TAACCATTTTGAGATAGAATCTATTTCTTCTCCACTTACCACTGGATCCCTTAGAATTACACAATTGCATATTATATTCT AATGGTTTCTCTATCAGCTAACATCCATTCTGTTTCCCTCCAGGTTCAAAATGACCACTATGAAGAGTTTTTCGCTCCTG AGCTGGACAAACATGGCTATAATGGTCTTTACAAAAGAAAAACAAATGAGGTTGTTACACTAGTCTGCTATCTTGTGATC GTAAACTCATAATTTGTAAAACTCTATTGAAACCTCTTTTTGGCGGGCTCACAGGTTTTCAATGGCAATATTAATACAAT TGATGGTTGTGCTACATTTTTCCGAAGAGACAGATTTTCACATGTGAAGAAATATGAGGTTGGAAATTGTTTTTATGTGT ATAGTGGTACTCTTTAGTTTGTGCATAACATATAATGGTGTCTCCTTGCATGCAGGTTGAATTTAATAAGGCTGCACAGT CTTTAACAGATGCCATGATTCCAACCACTCAGAAGAAATCTGCTTTGAATCGACTGGTTAAGGTGATTTATTGCACAAAA TATTGCATATTACTTTTGCCTTCCAAAATATATGGTCGTCTCTTGTGTATCTTGTGCTTACTGATTTTAATTTATGTTCT TAGGATAATGTTGCGCTAATAGTGGTTTTAGAAGCAAAAGTTAATAACCAGCCTGTTGATAATCCAGGAAAAAGACAGCT TCTTTGTGTGGTAAGCTCTTTTATTTTGCTTTTATTTGTTACTGTTAGGTCTTGTGTGCTCATGCCTTCAAGGCCTGCGA TGTGTATTTTATATCTACACTTATGCCTTTTATTTTATCATTCCTCATTTCCCCGATTGTAGTTGCATTGTATGTTTAAT GATAGGGCTTTTTCAGCCTTGTGCTTCATGTATGCTCCTTTCTTTAGAAGGCTTGTTTTTCTCAAGCAGAATTAGGTTTA GAAGATTTTCCATGATGACTAATTCTAGCTTTATTATTTTGCTGATGGTGGTTGGTCTTGTGTAAGAAATCTAGATTGTT AAACTTCTGAGGTGTTCTATATTTTCATAAATTAACTCTAAAATCTCACGCTGAAACAACTGAGCTATATGTGGTTTTAA GTTTTTTTTGTAAACTTTATTTGGATCTCTCAGAAAATTTATTATATTTCTTTGTTTCCCCTGCCTTTTTCTTTTGTTGT TGTAGGTCAAAACTACTTCTTTAGTAATATAACTATCTAAACTAACTCATATATTGCTTGTGGACATCAGGCGAATACAC ATGTAAATGTCCACCAAGATTTAAAGGATGTCAAACTCTGGCAGGTTAGTCATTTCTTTTGCTTCCTCACATTTATTGGA ATGTTTATTTTGATCATTACAGTTATAAATTTCCTTCCATTTTTAGGTGCACACTCTCCTGAAAGGATTGGAGAAAATTG CTGCAAGTGCAGATATTCCAATGTTAGTTTGTGGGGACTTCAATTCAAATCCGGGAAGGTTCGATTACTTTTATTTTTGT ATAATTTTGGAAACTTGTGTTCGGCATGGGTCTTTTGTTAGTATCAGCAAATTGTTTCTTATGGTTATATTCTCACTTTG TTGCAGTGCTCCTCATGCACTTCTTGCTATGGGTAAGGTTGATCCATCACATCCTGATTTAGCGATTGACCCACTTAGCA TATTGCGTCCTCACAGCAAGTTAGTTCACCAGTTGCCTCTGGTAATGTATTGCAGCCATTGAATGGAATAACTTATCTAA AATTGTCTACTGTCTCCACTTCTCCCACCTTTATTTTGCTCCTTAGTTTTTGTTCCTGATTATAGTTTATGGGTTGTATT ACTTCAATTTTAGGTCAGTGCTTATTCTTCATTTGCAAGGACAATTGGTCTTGGATATGAGCAGCATAAGCGAAGACTTG ATAGTGCAACAAATGAACCTTTATTCACAAATGTCACAAGGGATTTTATTGGCGCTCTTGACTACATATTTTACACAGGT GAGCTATCTTGCCATGTTACCTCATTTCTAAATTTAACATCACTGTCGCGTATTTATGTTGTGTTCCTTTGCTTTTCTTT TTTGTTTCAGCTGATTCATTGGTTGTGGAGTCATTATTGGAGCTATTGGATGAGGAGAGTTTGAGGAAAGACACAGCACT CCCTTCTCCTGAATGGTCATCAGATCATATAGCTCTCTTAGCAGAGTTTCGCTGCTGCAAGAATAGATCTAGGCGTTGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0743500.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTGAGCGTGCTGCGTGTGCACCTTCCCTCTGACATTCCTATTGTTGGCTGTGAGCTCACGCCTTACGTGCTCCTCCG CCGGCCTGACAAGACTGTTACCACCGATGATGCTCTCGAAACTGCCCCTCTAGACGGCCATTTCTTGCGCTACAAGTATC GTGTACAAAGTGATAAAAAGGTTGCGGTTTGTAGTGTACATCCATCCGAGCAGGCCACACTGCAGTGCCTAGGTTGTGTT AAGGCTAAAATACCTGTTTCCAAAAGTTACCATTGCACTCCAAAGTGTTTTTCAGATGCATGGCAGCATCATCGTGTTTT GCATGACCGTGCTGCTAGTGCAGTTAATGAAAATGGAAATGAGGAAGAGGAAGTATTTGGGCGATTTAATAATGCTGGGT CTGGGTCAATAAATACCAGCTTATCTGCCTCTGCATCAAGTGGTAGCTTGACAAATGGGTCAGCACCTCTGTATCCAGCA GCTGTTACACAACGAAGTGGTGGTGAAACTTGGTTTGAAGTTGGACGGTCTAAGACATATACCCCAACAGCTGATGACAT CGGTCATGTCCTTAAATTTGAGTGTGTTGTAGTTGATGCAGAGACAAAACTTCCTGTGGGACATGCAAACACTATACTAA CTTCTCGTGTTATTCCTGCTCCCTCTCCTAGTCCACGCCGACTGATACCTGTTGACGGGATGGGGAATGTAGATGCAGAT GGGCGTGTATCATCTTCGGGAACTTTTACTGTTTTGTCATACAATATATTGTCTGATTCATATGCTTCAAGTGATCTATA CAATTACTGCCCTTCATGGGCTCTTTCTTGGCCATATCGGAGGCAAAATTTGTTGCGCGAAATAGTTGGTTACCGTGCTG ATATCATTTGTCTTCAGGAGGTTCAAAATGACCACTATGAAGAGTTTTTCGCTCCTGAGCTGGACAAACATGGCTATAAT GGTCTTTACAAAAGAAAAACAAATGAGGTTTTCAATGGCAATATTAATACAATTGATGGTTGTGCTACATTTTTCCGAAG AGACAGATTTTCACATGTGAAGAAATATGAGGATAATGTTGCGCTAATAGTGGTTTTAGAAGCAAAAGTTAATAACCAGC CTGTTGATAATCCAGGAAAAAGACAGCTTCTTTGTGTGGCGAATACACATGTAAATGTCCACCAAGATTTAAAGGATGTC AAACTCTGGCAGTGCTCCTCATGCACTTCTTGCTATGGGTCAGTGCTTATTCTTCATTTGCAAGGACAATTGGTCTTGGA TATGAGCAGCATAAGCGAAGACTTGATAGTGCAACAAATGAACCTTTATTCACAAATGTCACAAGGGATTTTATTGGCGC TCTTGACTACATATTTTACACAGCTGATTCATTGGTTGTGGAGTCATTATTGGAGCTATTGGATGAGGAGAGTTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0743500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLSVLRVHLPSDIPIVGCELTPYVLLRRPDKTVTTDDALETAPLDGHFLRYKYRVQSDKKVAVCSVHPSEQATLQCLGCV KAKIPVSKSYHCTPKCFSDAWQHHRVLHDRAASAVNENGNEEEEVFGRFNNAGSGSINTSLSASASSGSLTNGSAPLYPA AVTQRSGGETWFEVGRSKTYTPTADDIGHVLKFECVVVDAETKLPVGHANTILTSRVIPAPSPSPRRLIPVDGMGNVDAD GRVSSSGTFTVLSYNILSDSYASSDLYNYCPSWALSWPYRRQNLLREIVGYRADIICLQEVQNDHYEEFFAPELDKHGYN GLYKRKTNEVFNGNINTIDGCATFFRRDRFSHVKKYEDNVALIVVLEAKVNNQPVDNPGKRQLLCVANTHVNVHQDLKDV KLWQCSSCTSCYGSVLILHLQGQLVLDMSSISEDLIVQQMNLYSQMSQGILLALLTTYFTQLIHWLWSHYWSYWMRRV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 448 448 - –
PANTHER
PTHR12121:SF83
44 357 314 8.3E-208 –
PANTHER
PTHR12121
44 357 314 8.3E-208 –
Pfam
PF15801
70 109 40 4.7E-8
IPR031615
Gene3D
G3DSA:3.60.10.10
218 418 201 4.0E-58
IPR036691
SUPERFAMILY
SSF56219
245 405 161 2.49E-19
IPR036691
Pfam
PF03372
252 374 123 2.7E-12
IPR005135
PANTHER
PTHR12121
358 406 49 8.3E-208 –
PANTHER
PTHR12121:SF83
358 406 49 8.3E-208 –
TMHMM
TMhelix
449 471 23 - –
Phobius
TRANSMEMBRANE
449 467 19 - –
Phobius
CYTOPLASMIC_DOMAIN
468 478 11 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0743500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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