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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0753100 |
| Transcript ID | LotjaGi1g1v0753100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cathepsin B-like cysteine protease; TAIR: AT1G02305.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|P07858|CATB_HUMAN Cathepsin B; TrEMBL-Plants: tr|I3SCV5|I3SCV5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0753100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132587843..132591886) extracted from Lotus japonicus Gifu genome v1.2.
GTGTGCTGTTTGTGTCGTGTTGTGAATTTTCTGTTATTTTCTTTGAAACTTGCGCGGCACTGTTGAAACTTTCCCTTTTT CTCACCCAATCCAATCCAATCCCATCTCATGTCATGTTAGAGTTTTCATCCCCACGCAACACTCAAATTGTCACCCTCTG CAACTCATGTAGTAACTTGTAACAAATAAACTAGTAGTAGTATTTATTATATTATATTATACACGCCAAATACCCCACCT CAACTTGCCAATCATACCAACATTCATCTATCTATAAAATACAAAATTCAGCTCCCACTTTTTCATTCCATCACCAACAA GGAAAATGGCCTCAACTCTTCTTCCCCTCCTCGCTACCTTGTTTCTGGCTTTCTCCGTCTACTATCTCCAGGTTATTTCT TTTCTTCAACATCCATTTTCCCCCTTTTTCTGCTTCTTCCTAGGGTTTGATCATGTCTATTTATGCTTCCTTTCTTTAAT CACTACCTCCTTGTTCACAGATCGCTGAAGCAGAACCACAACAGCTTTCTACTCTCAAGCTTAACTCTCGTATTCTTCAG GTAATTAATTCATTTCACTTGTTTCAACCTTAATTGCGGATGCTTAGTTTTTTTTTTGAATATTTGAAGTTTGAATTTAC TGTTCATGCCATGTGATTTGATGAATGGTTTTTGTTAGAAATATAATCATTCATTAATGTATCTTTTACGTAACAACTTA AGCTTTTCGGATAATTAATTGGTTATTTGACAGTTTTAACGTTATGATCATGATGCAGGAGTCAATTGCGAAAGAGATTA ACGAAAACCCCGGGGCAGGATGGGAGGCTGCTATCAGTCCTCGTTTCTCCAACTACACAGTTAGTCTTCAACTTTACCTG CATAATATAATACCCTCGGGTTTGGATCCTCTCCATCCATGTTTCCTCCATCCTCTCTCCATCCAAATCTGAGCCATTGA TTTTGAAATTTAAAGGCTTAGATCAATTTAAGAAGAGAGAGAAAAAATGAATTGTATTTAAAGGCTTGGATCAATTTAAG AAGAGAGAGAAAACATGAATTAATCCTCACCTTTAAAATTTAAAATCGATGGCTCAGATTTTGGATGGAGAGGAGATGGA GAGGATCCAAATCCAATACCCTCTTGATGATTGTTATTTACTCTTTAAATTGGAATTTTCTCATTTTCACTTGAACATGC TTTAGTCACATGATAATATGTTTTTGACTTTGGAAGGCATGTATTTTGTTTGATGCACTGCACAGGTTGCACAATTTAAG CGCCTTCTTGGAGTGAAACCATCGCCTAAGAAGGAGCTCAGAAGTACACCCGTTGTATCTCATCCGAGATCATTGAAGTT GCCGAAGAGTTTCGATGCAAGGACGGCTTGGTCGCAGTGTAGCACTATTGGAAGAATCCTAGGTCAGTTACTAGTTCCTT CTCATTACTTTTTTTTAATAATTAATTAGTGTGATTGGAAGGAAGTGCTGACCCTTTTATTTTTCTTTGTTATTGACAAT AACTTGGATTTCTGAATCACTTTTCAAATTAAAGATCAGGTAATTGTCTTGTTTTTCTCATATTGGCTACTTTTCAAACA CTTCCATTGTGGTTCTTTGAGCAAAAAGTAATCATCTGATCCTTGTGTTGATGATTCAGGGTCACTGTGGTTCTTGTTGG GCATTTGGTGCTGTGGAATCGTTATCAGATCGCTTTTGTATTCATCTTGATGTGGTCAGTAGTACTTCTAATAAAGCAAT ATTGAACTTTTTCTTAATTAGTGCATCACAGTGAATCTTCACACACTGGAGGGGCTTTACCATTTGAAAAAGGAATTTAC ATCCTATCTGTTTAATTGCAGAATGTATCTCTTTCTGTTAATGACCTTCTTGCATGCTGTGGCTTTCTCTGTGGGTCTGG CTGTGATGGGGGATATCCTCTATACGCATGGCGATACTTAGCTCACCACGGTGTTGTCACTGAAGAGGTAGCAAATTTTT TCATTTGCCTTTATTACTTAGGGACTAAAATCTAGGCAGTTAGAATCTGTATTCATTCAGATGTTCCCTTCAATTGATGC TAATAAGACTTGTATTCCCCAGTTGATCACTATGTCTCTGTTTTTTCTGGCTTTCTTATAAACAGCATTTTATTTTTTAC ATGACAGTGTGACCCATACTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCAGCATATCAAACTCCCAAGTGTG TTAGGAAGTGTGTAAAAGGGAACCAGATTTGGAAGAAGTCAAAGCACTTTAGTGTTAATGCATATTCGGTAAAGTCTGAT CCCTATGATATCATGGCAGAAGTTTATAAGAATGGGCCTGTTGAAGTCGCATTCACTGTTTATGAGGTAAAAGAAAACTC TTGCCCTTGCTTCTGCAATTAAATTTTGTGCAACTTCAGTGGTCTAAAATTGGAAACTCAAAATAATCCTATTTGAACTT ATTAATATATAATCTTATTTTGGAGACAATGATAGTGAATGATTGTGATTTGATGTCATGTGATCTGAACTGCTAAACAT ATCATAAAATATGAACTTATGGATACGAATTGAGAGGAATGAGAAATCTCTTCCAGTTTAGCAACTTAGTAGGGAAATTG AAAATAATCTCACTTGTTGGAGGCTCAGATGAACAAGACTTTTCATTCTGATCAACTATACACCTATTAAGGATAAAGAT ATATGTTTGATTCTTTTGGCAAATCATATTGGATTCGAAAACCTAATTATGGATTTACCTTATGTTGGAACACTGACGAT GAGTTTAAGTATTTCGTGATTTTTCATGAAGGAGGACTAAAGGTAAAAGTCTATTTTTGAACTTAATACATGACAGGACA TTATGGCACCGTGTCTTCCATATGGTTGTTATTGTTGGTCTCTTGTGTGTGCTGTAAAAGGATGATGGGTGCAACTGCAA CTCTCTAGAACCATTTTCATGTATTTTTGCAAACCTCTCACTAATTTTCACCTCTTCACAGGATTTTGCCCACTACAAAT CGGGAGTTTACAAGCACATCACAGGTTCTCAATTAGGTGGTCATGCAGTAAAGCTGATTGGGTGGGGAACAACTGACGAG GGGGAGGACTATTGGGTATGTTGATATGTTTCTGAGTATTGACACTTTCGTTTTCGTCCCCTAGACAATGCTGCTTTATG AAATTCAGAATGTATACTGATTGAAAATTTTCTGTTTCAGCTTATCGCAAATCAATGGAACAGAAGCTGGGGAGATGTAT GTAAACTGAACTATTTTTCAGCTTAAATATCTGTTAATAAAGGTGTGCCTTAGCTAATGATCTAATTTAATCTATATCGC AGGATGGTTACTTCATGATCAGAAGAGGAACAAATGAATGTGGGATTGAAGAGGATGTTACTGCAGGTTTGCCTTCCACC AAAAATATGGGAAGATGGGTGATGGACATGGATGCTGACGCTGATGTTTCATTCTGAATATAAATATAGATTATCTTACC AATTAGATTCTGTATGGTGTGTATTGAAAAAATCTGCACCAATTACTGTCTGTACTCCAAACTATCCAAATTGTGATTAT GATGTTGAAAGAAGGTAAGCTTTTGAGGTTTATTGGCTTTAGAGAGAAACTGCCATAATTACTCATGAGCACTTGGAATA ATTCATGTCCTCCATTCAGCTTTGATGATGATGATCCTTAAATGATGATACTTGATTTTTCTTTTCGTGTGGTTGAATTG ATTTTACGATTCTTTTGTATGAAAACATGAAGCATCAGACTAATAATATGAAAAGAAAAGAAGAAAAAGGTGTTATCAAT CCAAAAATATCATTGAAATATCTCACAAACTGGGAATGCCTAGTAATAATAATAGAGAAAAACACATTTGAATGTGACTT TCCAATTAACAATCATCATGATGAACATAGTAATGTTTTCATCAGAACATTTCCTTTAAATTACCTGAAGCTCACTCAAC TATGCTCATTTCTCCTCCTTAACTTTGGGGAGCAAGTGACGAAG
CDS sequence (LotjaGi1g1v0753100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCAGGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTGGAATCGTTATCAGATCGCTTTTGTATTCATCTTGA TGTGAATGTATCTCTTTCTGTTAATGACCTTCTTGCATGCTGTGGCTTTCTCTGTGGGTCTGGCTGTGATGGGGGATATC CTCTATACGCATGGCGATACTTAGCTCACCACGGTGTTGTCACTGAAGAGTGTGACCCATACTTTGATCAAATTGGCTGT TCTCATCCTGGTTGTGAGCCAGCATATCAAACTCCCAAGTGTGTTAGGAAGTGTGTAAAAGGGAACCAGATTTGGAAGAA GTCAAAGCACTTTAGTGTTAATGCATATTCGGTAAAGTCTGATCCCTATGATATCATGGCAGAAGTTTATAAGAATGGGC CTGTTGAAGTCGCATTCACTGTTTATGAGGATTTTGCCCACTACAAATCGGGAGTTTACAAGCACATCACAGGTTCTCAA TTAGGTGGTCATGCAGTAAAGCTGATTGGGTGGGGAACAACTGACGAGGGGGAGGACTATTGGCTTATCGCAAATCAATG GAACAGAAGCTGGGGAGATGATGGTTACTTCATGATCAGAAGAGGAACAAATGAATGTGGGATTGAAGAGGATGTTACTG CAGGTTTGCCTTCCACCAAAAATATGGGAAGATGGGTGATGGACATGGATGCTGACGCTGATGTTTCATTCTGA
Protein sequence (LotjaGi1g1v0753100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIQGHCGSCWAFGAVESLSDRFCIHLDVNVSLSVNDLLACCGFLCGSGCDGGYPLYAWRYLAHHGVVTEECDPYFDQIGC SHPGCEPAYQTPKCVRKCVKGNQIWKKSKHFSVNAYSVKSDPYDIMAEVYKNGPVEVAFTVYEDFAHYKSGVYKHITGSQ LGGHAVKLIGWGTTDEGEDYWLIANQWNRSWGDDGYFMIRRGTNECGIEEDVTAGLPSTKNMGRWVMDMDADADVSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 216 | 216 | 4.9E-66 | ||
| Gene3D | 2 | 26 | 25 | 7.8E-11 | – | |
| PRINTS | 3 | 18 | 16 | 1.2E-8 | ||
| Pfam | 3 | 214 | 212 | 2.3E-61 | ||
| PANTHER | 3 | 220 | 218 | 1.1E-113 | – | |
| ProSitePatterns | 3 | 14 | 12 | - | ||
| CDD | 3 | 215 | 213 | 5.28136E-114 | – | |
| PANTHER | 3 | 220 | 218 | 1.1E-113 | – | |
| SUPERFAMILY | 3 | 217 | 215 | 1.37E-76 | ||
| Gene3D | 28 | 220 | 193 | 4.4E-70 | – | |
| ProSitePatterns | 162 | 172 | 11 | - | ||
| PRINTS | 164 | 174 | 11 | 1.2E-8 | ||
| PRINTS | 180 | 186 | 7 | 1.2E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Cysteine-type peptidase activity | Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. |
Expression pattern of LotjaGi1g1v0753100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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